tbxta (ta,LOC107700831,LOC107689566,LOC108411273,LOC104926085)


Basic Information

Item Value
gene id tbxta
gene name ta,LOC107700831,LOC107689566,LOC108411273,LOC104926085
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 3486502 ~ 3491224 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217196.1
AGTATCTGGGACAACAAAAGATTAGCATTATTCGCAAATATACAACCGAGTTCAAAGGCAGCGCGGAGCAGACGCCGTCTCTCTCTTCCTGCTTTTGTCTCGGAGACGAGTTTGGATCAGGCCGCTCTCCGGCCACGAGGATCAAAATGCGTCCGtgaaaaataagattaaaaaaaacaacaaatgagtACGACATCTGTGAAAGtacctaaataaaacattttttaaaaatacggCCCATCTGAAGTTTATTGCTTATACTTTGCTCTTTATGTCATTTCccctattttatttaattattttcggtaacgctttatttaaggtgtctttgttacatAACATTATGCAAGTAATCCTAAACTAAACCCAATTTTAATGAGTACACGTATTAACACACGTTAAATAATatgtcactttaaaaaataaagcgtagatatttttttacacgCTTTTTTATATTGGCTGTGGTCTATCAAACACTTCGACGCTTTGTAACGGGCCTCTATGGATGTCAATAATACTTTCCGTGTCGCGGGGCCGTATTATCGGGCGCTATTAGGGCGCGATGGGCCTGGTCCTGCGCGGCGGGTCACGCCCCGTGACAGCGGGAGCTCCGCGTATCGGCCCTTTAAAAAGAGCCCGGCGCGTCAAAGGCCAGACCGAGACGCGCCGTCGAAGCATCGCGACCCGACGGGATTTAGTGATTTGGGACCTGTATTGATTTGATCGGAACTATGTCCTCCTCGAGCCCCGACCAGCGCCTGGACCACCTCCTGAGCGCCGTGGAGAGCGAGTTTCAGAAGGGCAGCGAGAAGGGCGACGCGTCCGAGCGGGATATTAAACTCTCCCTGGAAGACGCGGAGCTGTGGGGCAAATTTAAAGAGCTCACCAACGAAATGATTGTCACTAAGACCGGGAGGCGAATGTTTCCCGTGCTCCGAGCCAGTGTCTCCGGCCTGGACCCCAACGCCATGTACTCGGTCCTGCTGGACTTCGTGGCCGCCGATAATAATCGGTGGAAGTACGTGaacggtgaatgggtgccgggGGGGAAACCTGAACCGCAGAGCCCGAGCTGTGTGTACATCCACCCAGACTCACCCAACTTCGGCGCACACTGGATGAAAGCCCCCGTCTCCTTCAGCAAAGTCAAACTCTCCAATAAACTCAACGGAGGGGGACAGattatgtTGAACTCTCTGCACAAATACGAACCCAGGATTCATATAGTGAAAGTCGGCGGGATCCAGAAAATGATCAGCAGCCAGTCTTTTCCCGAGACCCAGTTTATTGCGGTCACAGCTTATCAGAACGAAGAGATCACAGCTCTGAAGATCAAGCACAACCCGTTTGCCAAAGCCTTCCTGGACGCCAAAGAAAGAAGCGACCACAAGGAAGTCCCAGACCACAGCACTGACAACCAGCAATCTGGATACTCGCAACTTGGTGGCTGGTTCCTGCCCAGTAATGGCCCCATGGGCCCCAGCAGCAGCCCTCCTCAGTTCAATGGGGCCCCCGTTCACTCCTCTGGCTCGTACTGTGAGAGATACTCCAGCCTGAGGAACCACAGAGCTGCTCCGTATCCCAGCCATTACCCCCACCGCAGCACTACCAGCAATAACTACATGGACAATTCTTCAGGAAGTCTTGCTACTCACGACAGCTGGTCGGCCCTGCAGATACCCAACTCCAGCGGCATGGGCACCCTGGCCCACACCACGAACACCACCTCCAACACCAGCCAGTACCCAAGCCTGTGGTCCGTCGCCGGGACGACCCTCACGCCCTCCGGCTCGGCATCGGGGTCCATCACGGGCGGCCTGACGTCTCAGTTCCTGCGCGGTTCCTCGGTGTCCTACTCGGGGCTGACCTCCTCCCTGCCCGTGTCCTCTCCCTCCTCGATGTACGACCCGGGCCTGAGCGAGGTCGGCGTCGGAGACGCTCAGTTTGAGAGCTCCATCGCCAGGCTCACGGCGTCCTGGGCTCCCGTGGCTCAGAGCTACTGAGATCCATCACACTGTGACTCTCACGACTTGATCCGAGGGGAAGATCCTGCGAACGCTGGTCAGAAGCCTGCTCCCAGAGGGAATGCAGAAGCACCTCTCTGTCGTTTCGACAATCAGAAGGACCGAGCGAAAGAAACGGGTTGATTTTCTGAATTCTGTATCTGTATGGTGTCATGGCACGAAGCAACGATGAGAGACGATCAATCAATCGTAGAGTATctatatttgcaaaaactgttAGCCATAAGAATGAGGCCAATTATGGTGTTTATTGTTCTTAATAATGTTATCTAAAAGATTAATAAGACCAAATCGTGCTGTTGACTcactaaaatgtatatgtgtgtaaataaatagaaattaacGCCCATTTTCGTAGTTTTACAGTATGTTACAGTAACAGTGCTTTCTGTAGAGCTGGGGAAAGATGGACTTTGCTGTTTAGTTTGGAAACATAAATCATTTGtacatatctatctatttgtaTTTGTTGGACTCTTTATGAGttttatttatgtcattttaataataaattaaagttgtttttttctgtcaaaccATTTGTCTGTAGTCTTTCCTGTCCTTTTTGTAACACGGATATAATTATTGTACGTCAATTAAGTATTTACtaaaactgaacatttattactaatttaaccttgaaacaggttttttttttttttttttaagaaatcaataGCGATTCAGCAAcaattaatgaatttaaaaaaatatctcttaaataaatgatagtttatgttattaattaatattatgtaatgttaataactaataaatttTTTCCTATGTGCCAAGCAGGAGATTGTACTAAACCttgtattttcttaaatatattatttaaatgtggcttgttcaaattattccatttaaaaatcttgGCATCGTAAAGatctttaaactaaaatatcataattgtCAGTTTATTAAATGGTCATTTCCGTTGAAAAGGCTTAGTACTAAATTAGTACTAAAATACAGGTATTAAATAAACACGTTTGAGCCGTTATTCTTTCTGAACTATGCATCAAACATCGTTTTTATTTCTTCAGGTTTTCTTATAGTTCTATTATTTCATCTTCATAGACACAGATCTTGTTAAAATATTCGTTTCAGTAATGCATAAGTTGAGTTGTGTTATAGATAGACTGTGATAGGTCTGCAGATCAAGAGAAAAtcaagaggaaaaagagaaagaatcaAGAACAAAACCCAAATGACTCGACTTCGGTGAGAAATCTGTGAGACAACagtaacaattataataatatgtcaTATAATAACAGCAAGTGACACATTCAATATGATATTAATGCTGCAcacaattgcatttttaatatttttcatatttgtgtcatacttttttgtatattggtaattattattattattattatattattatccaTTTAATTACtagtgaaaattaaaacaacaaaaatatgcttCTATTACACCTACTGCTACCActacttattttattagtaataattatacaatattgttttattttaatattattaatacaaaatcaatattaatactactactactactactgtaCAATCCATTCTAGAGAAATCATTTGTACATATCTAATTTGTTACACTATTAATGagtttaatgtcattttaataataaagttttttctgtcaaacattTATCA

Function

NR:

description
PREDICTED: brachyury protein homolog A

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0010159 specification of animal organ position biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060034 notochord cell differentiation biological_process
GO:0001947 heart looping biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10172 BRA, T; brachyury protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217196.1 True 3690 mRNA 0.42 8 3486502 3491224

Neighbor

gene id symbol gene type direction distance location
LOC122323611 NA coding upstream 322860 3150077 ~ 3163642 (+)
edn2 NA coding upstream 564483 2919368 ~ 2922019 (+)
hivep3a hivep3a,LOC107708727,LOC107687396,LOC107689544,LOC107732924,LOC107595896,LOC107569862,LOC107732908 coding upstream 571793 2894544 ~ 2914709 (+)
ptprua ptprua,LOC107732911,LOC108272369 coding upstream 921946 2380621 ~ 2564556 (+)
gmeb1 gmeb1,LOC107556889,LOC107595901,LOC107708700 coding upstream 1145379 2331733 ~ 2341123 (+)
nr0b2b NA coding downstream 12885 3504109 ~ 3508711 (+)
paqr7a LOC107567589,LOC107754930,LOC107689535 coding downstream 75790 3567014 ~ 3570984 (+)
trnau1apa LOC107754918,LOC107689564,LOC107567591 coding downstream 86754 3577978 ~ 3582390 (+)
stx12 stx12,LOC107700764,LOC107712603,LOC107689533 coding downstream 91870 3583094 ~ 3590653 (+)
ccn2b LOC107550649,LOC107700780,LOC107712605,LOC107578025,LOC107754917,LOC107689532 coding downstream 125917 3617141 ~ 3622533 (+)
G130141 NA non-coding upstream 46315 3439713 ~ 3440187 (+)
LOC122324184 NA non-coding upstream 118085 3353019 ~ 3368417 (+)
G130082 LOC103461248,LOC107835431,LOC106945151 non-coding upstream 336731 3149134 ~ 3149771 (+)
G130079 NA non-coding upstream 382915 3102944 ~ 3103587 (+)
LOC122323349 NA non-coding upstream 440618 2986542 ~ 3045884 (+)
G130138 NA non-coding downstream 5475 3496699 ~ 3498554 (+)
G130168 NA non-coding downstream 25236 3516460 ~ 3518398 (+)
G130148 NA non-coding downstream 46278 3537502 ~ 3540768 (+)
G130313 LOC105892072 non-coding downstream 406837 3898061 ~ 4076098 (+)
G130315 NA non-coding downstream 438989 3930213 ~ 3935051 (+)
G130077 NA other upstream 392788 3093067 ~ 3093714 (+)
phactr4a phactr4a,LOC107550657,LOC107687470,LOC107595895,LOC107689543 other upstream 508086 2959593 ~ 2978416 (+)
serinc2 serinc2,LOC107732928,LOC107689546,LOC107687316,LOC107708726,LOC108272915,LOC103358775 other upstream 592901 2889623 ~ 2893601 (+)
LOC122323290 NA other upstream 598874 2885413 ~ 2887628 (+)
G129993 NA other upstream 700154 2785925 ~ 2786348 (+)
sh3bgrl3 sh3bgrl3,LOC107700758,LOC107689536,LOC106570239,LOC105933927,LOC103368842 other downstream 81038 3572262 ~ 3576193 (+)
G130208 LOC107714468,LOC107559403,LOC107569308 other downstream 268643 3759867 ~ 3760985 (+)
G130372 mc5ra,LOC107746932,LOC107552309,LOC107675655,LOC107754914,LOC107566557 other downstream 753544 4244768 ~ 4259085 (+)
ptpn2b ptpn2b,LOC107738314,LOC107552315,LOC107672871,LOC107748370,LOC107666587,LOC108438851 other downstream 903361 4394585 ~ 4406579 (+)
znf706 znf706,LOC107672881,LOC103394271,LOC107748367,LOC107552318,LOC107698658 other downstream 968651 4459875 ~ 4464904 (+)

Expression


Co-expression Network