trhrb (trhrb,LOC107656598,LOC107592073,LOC107748762,LOC107563716,LOC107739629)


Basic Information

Item Value
gene id trhrb
gene name trhrb,LOC107656598,LOC107592073,LOC107748762,LOC107563716,LOC107739629
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 16803951 ~ 16809223 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217213.1
TTCAGCACCACGTTCAGGAGATCCATCATCTGATCTACAGCATCAGCGGAGAGCACATCTGTCTTCGGTCTCTTCCATCAACTCTGGAGATCGATTATGTGATCTACGTTGCGATTTCATATtgtaaattaatatgaattagtTTTCGAGACGCGAAACAGGCACAAGCGAAGTTTTAAGAAGGATGAGTCGCGTTTGAACCTTCAGAATccgactttttttaaaagaactttgGAGGGTTTTTTGAGAATGGAGAACTTGACGGTGTTCAACGATACTCTGGAAACTTGGACTGACCGCAGCGTCGAATACAAGGCGATCAGCGTCCTTGTAGTTTTCCTCATATGCGCTCTCGGGATAATTGGAAACGTGATGGTCATCCTGGTGGTCCTCACCACCAAACATATGCGGACCCCGACCAACGGCTATCTGGTCAGTTTGGCTGTCGCGGACCTGATGGTGTTGATCGCAGCCGGTCTGCCGAGCATAGCGGACAGTTTGTTCGGTTCGTGGATTTTTGGGCACGCGGGGTGCTTGTGCATCACATACTTCCAGTATCTAGGAATCAACGCATCCTCGTGCTCCATAACAGCGTTCACTATAGAGAGATACATCGCTATATGCCACCCGATCAAAGCGCAGTTTTTATGCACCCTCTCGCGCGCGAAGAAAATAATTTTCGGAGTTTGGGTTTTCACGTCGCTTTACTGCGTAATGTGGTTTTACCTGTCCGATATCCAACAGGTGCTCTACAAAGATGTGACTATAATAACGTGCGCTTACAAAGTGTCCAGAAACCTTTACTTACCCATATATTTTTTCGACTTTGGCATCTTTTTTGTTCTGCCACTCACTCTTGCTACTGTCCTGTACGGCCTTATTGCGAGAATCCTGTTTCTTAATCCTCTTCCGTCGGACCCCAAAGAAGACAAGAACGGGCACGAGAACTTCTCTAAAGCCCAGAAGAACAAGATAAGGAACTCCAGCCGCTGCTCCAGCACGACCGCGGCGTCCAGAAGACAGGTTACAAAAATGCTGGCAGTGGTAGTTGTTCTGTTTGCTGTACTCTGGATGCCGTACCGTACTCTGGTGGTGGTGAACTCCTTCCTGCACGAGGCCTACCTGGACACCTGGTTTCTGCTCTTCTGCCGCACATGTGTCTACCTCAACAGCGCCATCAACCCTCTTATCTACAACGCCATGTCTCAGAAGTTCCGCGCCGCCTTCCGAAGGCTCTGCCGCTGCGGCCGAAACGCCCAGGCCAACAAGGCAGCCTATAGTGTGGCACTAACCTACAGTGTTGCCAAGGAAACGTCAACGGTGGAAAGCACAGGGCATTTTTCAACCGAGATAGACGATTTGACACCGACAGAGGAGCTGTTTCCTGATAAGAAGCTTCTGTATCCAGAGGACTGTGACTTTAGGAAGGAGACTTTCAGCCAGGCCTGATAAACTCACTACAGCTACACACACCATAAATCTCAGAATACCAGATATCTGACGTAACAATACATACTCAACTGCAGGGACAGCACTTTGAAAGTTTCACTTTAtcttgatttaaaagaaaagcatgcTCAATACAGTCGAATTTATCTTCCTGTCTCGTTCACTTGCCAAAAAGAACGTGAAATCAAACCACTTAATTAAAATCGCAGTACACTGCATATGTAATGCGGGGTAAACTGAAGTACATATTGatctaaaaatatctttagGGATTGCCCTTGTGATTAATGTGTGGCCTTTTCCCCCTGCAGACCCCTGGGGGGAAAATGCTGAAACTGCTTTATTCTGCAGTTGCAGTCGTTTCAGGAATGTTCAATAAGAGTAAACTTAGTTTACATCCCActgtatagaaatatatatatttatataatacaaaatgctTTCAAACTGCATAGCATTTTTTTGATATGTGAAGATCATTGGCATTCTGATATCCCACTGAAGAAAAATTTGATTTGAAGTTTAATGAGCTGCTTTTTTATGTTAAGGTAATGCAAATAAGCAAATGAACGAAGAAGCAAATGTATGAACAAAAGATGAAATGGgtataacatttttacatcGACGGCATtgatgtaaattatttttaggcGAGTCATTCTTAAAGCTCAATGTGCCATTATCTCCACCAGCTGGACAGGGTTGCCAGGTGTGCGAAACAAAACCACCCTAATTGCTAATCAATTACCTCCAAACTGGTCCAATTTTACGTTTTTTCCAAGCCTGTTTTTCAGTATTGTcagattttttcagtaaatcaCGTCCTGGGGGAGGTGGGATCACGCTGCAAAAATTTTAACCCCCGATTTTCGCTCGCTGGCAGGTTTTGCGAAATCACAAACAAAATGCTGGAAATCTGACTGAAAATAAATCAGCGGTAACCTACAACTAATGAGACGGCGACATACATGGTAGCAGGACGTTCAGGTACGAGTTATAGACCACAATACCAGCAAGCTCTGTCGATTTGGACCCaagaaattgtgaaatatgCACTTTGTTAGTAACATTTTCAGTCGTGCACATAACAGCAACCGAAAGCTGTGCGAAAACTACAGTGATCCGATGACTTTGAAAATGGTGCAGTGTGGACACGtcataaaaaacagtaaaagtagCCCGATTCTGTGGGAAATtcagacttggcaacactgcatAATACTCGTTTCCTCACACGTTGTTGCCAAACACCCCCTTGATTGCCATTGgtcatataaaataaacaatctcGCCCCAAACTCATGCTATTGGCTGATAAAAGCATGCAGATAAAACCTTCAGAGAAATGGCcgaaaaaccccaaaacaaaacaccactGTGTGTACTCTGCCTTACTTATGTTTAACAACTACTTAgcataaagaacatttattgaGCTTAAACTGAAGATTATTAACATTACTAAGtaaatgaatgtttgaaaaaatgtctaaaaatactCCTCATCCGATGAATGAATCCTTTGTTCATTCTCTTGTATCATAAATGGGTAGACAGCATACGATTGTATTGGTGAACTTCATGCTAGTCGATAAGCTAAGATGGTTTGTACATGGttaaatgtcttgttttcttcATCTCTGTCGCAACTGACCGTGCATTCAATTATTCTGCATTAATATGTCgtgttttaggttttgaatataATATCTTAGTGttcttgatgtaaaaaaaaaaaaaaaaaaggtctgttCCGTTTTGATAGCTAGTCAGGTTTGCTGTCCGGGTGTCAAAAAATAGGCtattttagtgaattaaatAACTCAGTTTAAATAGGTTCTTACGAAGATACAGTCACACGAATGGGTTTGAATCTACACGCCGAGATGGTGTTCTGAAGTGTTGATGCTTATCATTTTAAAGCTCTTTTCCGCTCgaaacaaatgtataaattgtTCAGTATGTTTAATTGTGCTGTAATTACTGTCTCAGTTTGGTGAATGCTTGCCATTAACGTTGATACGCCTGATGCTGAATCACTCAGTCAAACGCATCCATATTATAACTAttgatattttgcatttgtgttatTATCCAGGGGTTAATTAATGCCGTTACATCTacatctattttaaaacatatttctgaataaa

Function

symbol description
trhrb Predicted to enable thyrotropin-releasing hormone receptor activity. Predicted to be involved in phospholipase C-activating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in congenital nongoitrous hypothyroidism 7 and hypertension. Orthologous to human TRHR (thyrotropin releasing hormone receptor).

NR:

description
thyrotropin-releasing hormone receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004997 thyrotropin-releasing hormone receptor activity molecular_function

KEGG:

id description
K04282 TRHR; thyrotropin-releasing hormone receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217213.1 True 3602 mRNA 0.42 2 16803951 16809223

Neighbor

gene id symbol gene type direction distance location
nfatc1 nfatc1,LOC107592032,LOC107739553,LOC107656600,LOC107697147,LOC107563708 coding upstream 156011 16609949 ~ 16647940 (+)
atp9b atp9b,LOC107656641,LOC107563702,LOC107697002 coding upstream 201405 16562326 ~ 16602546 (+)
sall3b sall3,sall3b,LOC107696994,LOC107592031,LOC107563697,LOC107739555,LOC107656642 coding upstream 241975 16550405 ~ 16561976 (+)
galr1a galr1,galr1a,LOC107697195,LOC107592101,LOC107563713,LOC107656602,LOC107739633 coding upstream 283145 16518140 ~ 16520806 (+)
tshz1 tshz1,LOC107748691,LOC107592027,LOC107739558,LOC107696938,LOC107688322,LOC107593600 coding upstream 444514 16324141 ~ 16359437 (+)
pkhd1l1.1 pkhd1l1,LOC107748704,LOC107592039,LOC107739541,LOC107563710,LOC107656576 coding downstream 23436 16832659 ~ 16868461 (+)
gdf6b gdf6b,LOC107697222,LOC107592104,LOC107563717,LOC107739601 coding downstream 59470 16868693 ~ 16871477 (+)
LOC122323882 irgf1,LOC107656631,LOC107599582 coding downstream 142886 16952109 ~ 16954762 (+)
ssr2 ssr2,LOC107739538,LOC107748705 coding downstream 147668 16956891 ~ 16959237 (+)
si:dkey-240h12.4 si:dkey-240h12.4,LOC107667793,LOC107748765,LOC107565569,LOC107656625,LOC107599596,LOC108440884,LOC108273078 coding downstream 159152 16968375 ~ 16982580 (+)
G133639 NA non-coding upstream 39054 16764632 ~ 16764897 (+)
G133632 pleca non-coding upstream 96255 16707370 ~ 16707696 (+)
G133631 NA non-coding upstream 98192 16705553 ~ 16705759 (+)
G133630 NA non-coding upstream 98911 16704531 ~ 16705040 (+)
G133629 LOC107748698,LOC107697034 non-coding upstream 100199 16702165 ~ 16703752 (+)
G133667 NA non-coding downstream 74345 16883568 ~ 16900324 (+)
G133674 NA non-coding downstream 92554 16901777 ~ 16995608 (+)
G133682 NA non-coding downstream 143237 16952460 ~ 16955726 (+)
G133687 NA non-coding downstream 232753 17041976 ~ 17042543 (+)
G133688 LOC107739535 non-coding downstream 238571 17047794 ~ 17050701 (+)
G133626 LOC107697034,LOC107739549,LOC107748698 other upstream 111006 16686125 ~ 16692945 (+)
fbxl6 eppk1,fbxl6,LOC107748699,LOC107739550,LOC107656638,LOC107697067,LOC108441690,LOC107697086,LOC107748700,LOC107592036 other upstream 132766 16567727 ~ 16671185 (+)
ccdc126 ccdc126,LOC107656662,LOC107593617,LOC107592015,LOC107739571,LOC107688383 other upstream 865131 15935260 ~ 15938820 (+)
LOC122323320 NA other upstream 924684 15878125 ~ 15879267 (+)
hoxa5a hoxa5a,LOC107654773,LOC107592096,LOC107710354,LOC107688408,LOC107602374,LOC107748660 other upstream 1027167 15774672 ~ 15776784 (+)
LOC122323322 NA other downstream 74856 16884079 ~ 16885971 (+)
LOC122324116 NA other downstream 86649 16895872 ~ 16900069 (+)
trnap-agg_23 NA other downstream 91168 16900391 ~ 16900462 (+)
trnap-agg_24 NA other downstream 92266 16901489 ~ 16901560 (+)
pip5k1aa LOC107748713,LOC107565582,LOC107599553,LOC107739532,LOC107656623,LOC107693396 other downstream 249233 17058456 ~ 17068269 (+)

Expression


Co-expression Network