hcn3 (hcn3,LOC107693352,LOC107724094,LOC107589404,LOC107739502,LOC107656480,LOC107599514,LOC108437924)


Basic Information

Item Value
gene id hcn3
gene name hcn3,LOC107693352,LOC107724094,LOC107589404,LOC107739502,LOC107656480,LOC107599514,LOC108437924
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17695970 ~ 17706893 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217214.1
TGTCCTCTGGCGCAGGTTGGCCCCGCCCATTTCCTCCCGCTGAGGTGTGACGCTCTCTCCCTACCTGTTCATCCCGACAGCTTGCCGAACAGATAACACGCAGGTGTCAGCAGAGAGGGAGATAAAGACGGCGCCTGCCACCAAGAAGCCGATTATTTTCAAACCTCTGCGAGCCTCGTCCCGTTCTTCATGTAATAACTGACGCGTGATTGGACAGCGAGACACCCCGCGCGCGTTCCGGGGAGAATCCGCCCGCGCGCGAGTCGGTAGATGTGCGGTAAGTGGATACCGGAGAATAATATTGACAATAAATGCGCTCGTTCCCAGAGGAGCTTTCCAAGGGCGGGTGAATTACGCAGAGAGGGACGTCTGGATTCTCTTTGGAAGTTTTGGGAGTCCGTTTGCGCCGGTGAACTTTCAGTAGCCTAAAAACGGTAAACAGACATGTTCGGACTTTTTGAAAACGCTGACCTAATGCTCCCCGTTCATGCTCAAGAAAGAGTTTAAAATAAGGTTAAGTTTGCGTTATGAGTATTTAAAGACGAATCGACGAACGCGTCCGTCTTAAAGAAGTGTTAAAATCATTAGTTAGACCGGTTTGTATTGAAAACCCGAGGGTTTCGTGTCCGAACCTTGGTTTCATAATACAAAAGGGTTCTGGATTTGGAAAGCATCATGTCCTCGTTCGCTTTTTGAGACTCCACCTGCCAAACCGGTCATCAACCCGAACCTGCATTAACTGAATCTGAATTATGGATGGTGACGGACAGCCTCCGGCTTCGAATGGTGACTCGAAGCTCCGCTCCAGAGGAGGCCTCTCCTTAAACAACTGGCGTTCCTCTTCGCGGACTTTGCTGCGAGGAGAGCGGGCGGGAGAGGCCGTGAGCCGAAGGCTGCTGTCCGTCGTCAACCGCCAGGAACGCACCGACTCGGGGGCCGGTCCCGCTTCGAAATCCCTTGAGGTGACCGCGGGGTTGGATGGAACGACGGCAACCACCGCCGTGACCACGTCCACTCCGCCTTTCCTCGACAAAGCCATGGCAGAGTCAACAGGGCCCGCCGGAGCCTCCCAGGCATCTGGGTCCGAGGAAGGGGTCTTCCACGACCAGTCCACGTTTCTCCAGAGACAGTTCAGCTCCATGCTGCAGCCGGGGGTCAACAAGTTCTCTCTGCGCATGTTTGGGAGCGCGAAGGGTGTTGCGGCGGAGCAGGAGCGGGTCAGGTCATTTGGGGTTTGGATTATTCATCCATACAGTGACTTCAGGTTTTATTGGGATTTGGTGATGCTGTGCCTGATGATGGGCAACCTCGTTATTCTGCCATGGGGCATCACCTTCTTCGAGGATCAGAACACGCTGCCGTGGATCACCTTTAACGTGGCCTCCGACACCctcttcttggctgacctcgTCTTCAACTTTCGTACCGGCATTATGGAAGGAGATAACACGCAAATCATCCTGGACCCGCAAGTGATTAGTCGGCGTTATCTGCGAGGCTGGTTTCTGGTGGACTTCATCTCCTCCATTCCTGTGGACTACATCTTCCTGGTGGTGGATATAGAGGCACGGCTTGAGTCGGCAGAGGTGTACCGCACCGCCAGGGCTTTGCGCATCGTACGCTTCACCAAGATCCTCAGCCTGCTCAGATTGCTGCGCTTGTCCAGACTTATACGTTACATTCATCAGTGGGAAGAGatcTTCCATATGACCTATGACCTTGCGAGCGCAGTAGTGCGCATAGTGAATCTGATTGGAATGATGCTGCTGCTGTGTCACTGGGACGGCTGCATGCAGTTCATGGTGCCCATGTTGCAAGATTTCCCGCCCAACTGCTGGGTCGCCAAAAACAACATGGTGAATTCCACTTGGGATGTCCAGTACTCTTATGCCCTTTTTATGGCCATGAGCCACATGCTGTGTATTGGATATGGTGCTCAGGCCCCCGAGGGACCAACTGACGTCTGGCTCACGATGATCAGCATGATTATTGGCGCCACCTGCTACGCCATGTTCTTGGGCAATGCTACCAACCTGATCCAGTCCTTGGATGCTTCCCATCGGCAGTATCAAGAGAAGTACAAACAGGTGGAACAGTACATGTCCTTCCACAAGCTGCCGGCTGACATGAGGCAGAGGATCCATGATTATTATGAGCACCGCTTCCAGGGGAAGATGTTTGACGAAGACAATATCTTTGGAGAACTCAATGACCCACTAAAAGAGGACATAGTCAACTATAACTGCCGTGAGCTGGTGGCTAACATGCCACTCTTCGCGAACGCCGATCCTCACTTTGTCACCGTGCTCCTCACAAAGTTACGCTTCGAGGTCTTTCAGCCGGGTGATGTCATCATCCGTGAAGGGACTCTCGGTCGTAAAATGTACTTCATCCAGCACGGCTGCGTCGGTGTGATCACTCACGAcaacaaagagaagaaattgaACGACGGCTGCTACTTCGGCGAGATCTGTCTGCTGACCCGAGGCCGTCGTACAGCTACCGTCAAAGCGGAAACGTACTGCAGACTTTATTCGCTCAGCGTGGACAGCTTTAATGAGGTCTTAGAGGAGAACCCGTTAATGAGGAGGGCGTTTGAGAGCGTAGCGGTGGACCGGCTGGAGCGGGAGCGGGAGGGAAACGGCATCGTGCATTCACAAAAGAGCGTGGAGGTTGACTGACCAGAGACTCACCGAAGAtgactgaatgtaaaaaaaaaaaagcaaaaaaaaatatcatggtGTTACGGTGTCCATATAATTGACATTAATGTACAGTTGCAGTATGGTGTGATTAATCTAATTTCTTATTCTCAATTTCACAATgcaatgtaataataaacaatagcaGCCCTTTTGATATTCTTAAGATACTGgatttatgtcatttatttcagtcGGAAACCATAAATTTAGCAAGTacctatatatattataatacaagtaaagatacaataaaattaaatgaacatagcacaaaatattacaaaagtttTATTGCTTCTACTAAGCTCCTATGGTATCAAGTAGTCAAGGAATTGCTTCCTCTAAGTTTTGCGTTTAGCAAAATATCTCCAAGGCGGTTTTCAATATGTTAACTCAGTACAACTCTttgaaattctttaaaaattgctttaatttCAAAACGTCCAGCCGGCCACCAGCATATAACAGTGTTGCGCTCGTCCACTCGTCCTTTTATTATTGTCGTGCTGCTGGTGGAAGGTCTCTGGATTTGTCATTGATTATAGCTAATCAAATCGAGGTAaatcaatgaaagaaaaaaagttgaaaataatacttaatccaataatataatgaaattttATCCGCTTTCCTGATCAACATCGAACACTAAAGAATCGCGCACTGTAAGAAAAGATGTCTGGTAGCTGAAAGACACGGATGAGCTGGGACATCTGCTCATTGTCCTCTTAACttcaaattaaagtattaaacaaTATGAGTCACATAATCGCTGATTAAACTCATTTCCGTTTGGCCTGAGCCCTTACTTATCTGTGATAATCGGTTGTGACGAAAATAACCCTTTGAGAGAAGGTTGTTTTCACGTGTTTTTAAGGGAATATTTGCTTAGGAGCTTAAGTGATACGCTCATTTCAAATTCTGTTTTGTTAGTAACATTTCTGCTCTTCTCTGTGtttggaaataaaaacagaaatataactCCACATAATGTGTGATACTAGAGAGATGAGGAGTATTATGGAAAACTGAGATTTTGAATATAATGTTCATTTGATGTGTTTCATATGCCACTATATTATTAAAGTATGTTATTAACTGTT

Function

symbol description
hcn3 Predicted to enable sodium channel activity and voltage-gated potassium channel activity. Predicted to act upstream of or within potassium ion transport; sodium ion transport; and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human HCN3 (hyperpolarization activated cyclic nucleotide gated potassium channel 3).

NR:

description
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217214.1 True 3808 mRNA 0.47 7 17695970 17706893

Neighbor

gene id symbol gene type direction distance location
ndufv1 ndufv1,LOC107693353,LOC107589403,LOC108437925,LOC103023083,LOC107599567 coding downstream 1204 17688665 ~ 17694766 (-)
kmt2ba LOC107724085,LOC107693264,LOC107589473,LOC107739503,LOC107665484,LOC107599517 coding downstream 10049 17662990 ~ 17685921 (-)
si:rp71-15k1.1 NA coding downstream 33881 17658059 ~ 17662089 (-)
si:ch211-288g17.4 LOC107693284,LOC107724121,LOC107589401 coding downstream 39444 17649882 ~ 17656526 (-)
si:ch211-288g17.3 LOC107589397,LOC107693356,LOC107724088,LOC107599520,LOC107665487,LOC107739507 coding downstream 83703 17607953 ~ 17612267 (-)
si:ch211-81a5.8 NA coding upstream 1121 17708014 ~ 17710108 (-)
clk2a clk2a,LOC107724099,LOC107599513,LOC107589405,LOC107739501,LOC107656479,LOC107693351 coding upstream 4457 17711350 ~ 17720489 (-)
setdb1a setdb1,LOC107724106,LOC107589406,LOC107693347,LOC107739578 coding upstream 14107 17721000 ~ 17735410 (-)
lrrc71 lrrc71,LOC107739500,LOC107656478,LOC107724080,LOC107693350,LOC107577895 coding upstream 29293 17736186 ~ 17741015 (-)
ash1l ash1l,LOC107693346,LOC107739498,LOC107656475,LOC107724081,LOC107599509,LOC107589474 coding upstream 34853 17741746 ~ 17769787 (-)
G134247 NA non-coding downstream 25276 17598064 ~ 17670694 (-)
G134252 NA non-coding downstream 50337 17620174 ~ 17645633 (-)
G134245 LOC107599519,LOC107739505,LOC107665494,LOC107724097,LOC107693358 non-coding downstream 101646 17589996 ~ 17594324 (-)
G133970 znf865,LOC107724093,LOC107589382,LOC107656606,LOC107599536,LOC108439897 non-coding downstream 350754 17325331 ~ 17345216 (-)
G133951 ccdc106b,LOC107656610,LOC108273335,LOC103027983 non-coding downstream 406590 17287667 ~ 17289380 (-)
G134272 NA non-coding upstream 82134 17789027 ~ 17789326 (-)
G134273 mrps21,LOC107739612,LOC107656470,LOC107724074,LOC107599587,LOC107589503 non-coding upstream 82658 17789551 ~ 17798825 (-)
G134299 celf3a,LOC107693341,LOC107739496,LOC107589410,LOC107750801 non-coding upstream 145279 17852172 ~ 17857186 (-)
G134298 NA non-coding upstream 162238 17869131 ~ 17871956 (-)
G134309 trim46b,LOC107678799,LOC107599500,LOC108241966 non-coding upstream 232054 17938947 ~ 17947834 (-)
LOC122324164 LOC107589398,LOC107693356,LOC107724088,LOC107589397,LOC107599520,LOC107665487,LOC107724089 other downstream 79693 17613446 ~ 17616277 (-)
G133948 LOC107693373,LOC107724108,LOC107739520,LOC107599537 other downstream 361736 17330697 ~ 17334234 (-)
G133949 NA other downstream 411226 17283332 ~ 17284744 (-)
LOC122323474 LOC107589464,LOC107589461,LOC107656564,LOC107739585,LOC107599573,LOC107656565,LOC107739586,LOC107599590,LOC107693268,LOC107739622,LOC107589465,LOC107724065,LOC107656563 other downstream 477180 17213961 ~ 17218790 (-)
trnap-ugg_15 NA other downstream 795194 16900705 ~ 16900776 (-)
s100a10a s100a10a,LOC107599503,LOC107693282,LOC107589481,LOC107589504,LOC103356278 other upstream 222796 17929689 ~ 17935436 (-)
G134318 NA other upstream 303989 18010882 ~ 18011399 (-)
si:dkey-266f7.5 NA other upstream 462630 18169523 ~ 18188029 (-)
cks1b cks1b,LOC107753514,LOC107589507,LOC107599584,LOC108433716,LOC103394526 other upstream 518716 18225609 ~ 18241613 (-)
LOC122324083 LOC107589493,LOC107693246,LOC107734014 other upstream 980456 18687349 ~ 18691249 (-)

Expression


Co-expression Network