LOC122323412 (c1galt1,si:dkey-202e17.1,LOC107702589,LOC107568284,LOC107754798,LOC107731548)


Basic Information

Item Value
gene id LOC122323412
gene name c1galt1,si:dkey-202e17.1,LOC107702589,LOC107568284,LOC107754798,LOC107731548
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5739319 ~ 5744577 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217226.1
ACTGATGTAAATGAACTGTGTTGCACAATCTGTAAAGTCATCTGTGTGTTTAAGGGCAGGACGTTTGGAGCATTGACGTTATATTGGCTTAAATGAGTCGAAGAAACAGCTTTTATCACACACGCGTAAGACATGAGGTCATTTAggaggcactttttttttttaagtggcgtAGCAGTGAGTGTCGTGCTCTCAATGACTTATTCGCGCGTTTTAAGGATGCCTTCGTGTGCTGTGAACGACTGCAATGTGTCTGCTGAGCAACATACAGTAGCTGAGAACAGAAGTGCTGTGCCGGGGTCCAGCCAGAAGGTCCGAGTGCTGTGCTGGGTAATGACTCAGCCCACACACCTGCAGTCCAGGACCCAACATGTTCGTGCCACATGGGGCAAGCGCTGCAACATGGTTCTGTACATGAGCTCGGAGGAGTCCGATTTCCCCACGGTAGGGCTCAACGTGACAGAAGGACGCAGTCAACTCTACTGGAAGACCATACGGGCCTTCCAGCACATCCACGCGCACCATCTGGAGGATGCTGATTGGTTCCTCAAAGCTGACGATGACACATTCGTTGTCCTTGAGAATTTACGCTACACTTTGTCAAAGTACAACACGGAGGAGCCGCTGTATTTTGGACGTAGGTTCGCACCGTTTGTCGCACAGGGCTACATGAGCGGAGGAGCCGGGTACGTCCTAAGTAAGGAAGCTCTGAGGAGGTTCGTGAAGGGTTTTGCTGATGGCCTTTGTACACACGACACGGAAACTGAGGATGTTGGTTTGGGAACATGCATGGAGACGATGAAAGTTCAGCTGGGTGATTCAAGGGACGTTTTAGGGAGACAAACTTTTCATCCTTACCCTCCAGATCATTACCTGCCCAGACAGACACTCAGACCACGACCCTGGCACCTCCTCTATGAGCATTACCAACCCATTGAGgGCCCTGGATGCTGTTCAGATTTAGCAATCTCTTTCCACTACATAGACGCAGTGCAAATGCACACTTTAGAGTATTACACATATCACCTACGCCCATATGgatataaatacagatttaagcCAGATTAGCACTCGAACAACAGAAATGACATCTAAAAACAAGTAATGTAATCTTTAGTGAAATTTATTGATACGTGTATACTTTACTTCACTGTACcattaaatgtatgttatagTTATTGCTctatacaatattaaaacaagttTTACAAAGTTACAGACTAACAACTTTATTTGTACTAAACATTCATTACAATAGCTTTAGAAAACACAGAGGTTTGCTTCATCGTAGTCGTAAAAATACAAGACAAGAAAAACAGGTTAATACAGATTTCGGgtgtcattcatttataaaggaaaaaaactgtatgtttGATTGTAATGCGTTTAAGAATTGATCTGAGGAGTCTTGATTACTACAAAAGAAACATGAGTAATGAAACATGGATAAACGTTGTTGAAATAATTGATGGAAATTATGTTATtcatacaatataatacaaatttaacATACAATACTATCCCTAAGAGTTTAACACAGATGTGTGATGTTATTGATCAGTGCTAGAAGTGGGTCGATGCTGTCCTGTACACAGTATTAGTTATGCTGTGCAGtgcttttttacagtataaagcagGGACATGTTATTAGCTTCTTACATTAGCgttggttaaaattaaaatgcacgtATAATtcgttcaaataaaataaaaataggcatGTGTATCTACGCATTAAATTTATGAAATgtagcagtgaatgggtgccgccagaacaCAGCttagtccaaacagctgataaaaacatcacaagtaatccatacccctccagtccatcagtgaacaacttgtgaagtgaaaagctgcatgtacaaaaaatgcattagaaagactatttcagtttttttatttcaatttactCAATTTACTTAAATTATGCGTAATATTGCTTTCCTCAGTGAAAaatgtctgaatcaggagagatgTATGCACAAATCATGCCCTACTTACTAATGATCCAAACATCAGTAGATGGACTTCATCAATGGAAGAAGAGGATTATGGGCGGATATTTttgatggtttaaagttaaaacatcttgatggatttgtttcatacaaaaac

Function

symbol description
c1galt1 Enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Involved in angiogenesis and kidney development. Is integral component of membrane.

NR:

description
PREDICTED: glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217226.1 True 2124 mRNA 0.40 3 5739319 5744577

Neighbor

gene id symbol gene type direction distance location
umad1 si:dkey-119m17.2,umad1,LOC107598207,LOC107568281 coding downstream 23032 5706149 ~ 5716287 (-)
glcci1a glcci1,LOC107702447,LOC107731573 coding downstream 34009 5675485 ~ 5705310 (-)
rims3 rims3,LOC107672861,LOC107598211,LOC107702460,LOC107571463,LOC107731575 coding downstream 68948 5614268 ~ 5670371 (-)
ptp4a3a ptp4a3,LOC107702466,LOC107571462,LOC107598212,LOC107731571,LOC107738588,LOC108272580,LOC103031245 coding downstream 129460 5586537 ~ 5609859 (-)
xkr8.3 LOC107598214,LOC107731550,LOC107702601,LOC107738589,LOC107672867 coding downstream 212149 5523080 ~ 5527170 (-)
LOC122323838 npr1a,LOC107694365,LOC107754786,LOC107731544,LOC107677481,LOC107595610,LOC107584346 coding upstream 67407 5811984 ~ 5836378 (-)
asns asns,LOC107754811,LOC107731557,LOC107702657,LOC107672863 coding upstream 179048 5923625 ~ 5932827 (-)
bloc1s4 bloc1s4,LOC107672822,LOC107568287,LOC107702415,LOC107731556,LOC107598233 coding upstream 189055 5933632 ~ 5938584 (-)
pard6gb pard6gb,LOC107672872,LOC107754812,LOC107702404,LOC107731577 coding upstream 194873 5939450 ~ 5970571 (-)
dtnbp1b dtnbp1b,LOC107568291,LOC107754801,LOC107731565,LOC107694327,LOC107598220 coding upstream 419246 6163823 ~ 6192690 (-)
G130880 NA non-coding downstream 64441 5674554 ~ 5674878 (-)
G130827 NA non-coding downstream 216353 5520939 ~ 5522966 (-)
G130804 NA non-coding downstream 298454 5440426 ~ 5440865 (-)
G130801 NA non-coding downstream 305390 5433562 ~ 5433929 (-)
G130764 NA non-coding downstream 386057 5345595 ~ 5353262 (-)
G130914 NA non-coding upstream 1271 5745848 ~ 5876713 (-)
G130920 NA non-coding upstream 8008 5752585 ~ 5883367 (-)
LOC122324223 NA non-coding upstream 94216 5838793 ~ 5847759 (-)
G130955 NA non-coding upstream 362562 6107139 ~ 6162535 (-)
G130969 jarid2,LOC107568290,LOC107702394,LOC107754814,LOC107694367,LOC107731546 non-coding upstream 408462 6153039 ~ 6155564 (-)
LOC122324254 NA other downstream 333683 5404516 ~ 5405636 (-)
G130744 sema4ab,LOC107702572,LOC107672813,LOC107598230,LOC107731578,LOC107705066 other downstream 479155 5141505 ~ 5260164 (-)
G130763 NA other downstream 487130 5245353 ~ 5252189 (-)
LOC122323502 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other downstream 516436 5087244 ~ 5222883 (-)
G130696 NA other downstream 797487 4743572 ~ 4941832 (-)
G131006 LOC107754818,LOC107731580 other upstream 617770 6362347 ~ 6363172 (-)
sh3bp5lb sh3bp5lb,LOC107711328,LOC107677461,LOC107694325,LOC107754828,LOC107584304,LOC108435520 other upstream 883021 6627598 ~ 6639220 (-)
polr1h znrd1,LOC107584303,LOC107754832,LOC107677479,LOC107694346,LOC107595594 other upstream 903813 6648390 ~ 6649389 (-)
srd5a1 srd5a1,LOC107691541,LOC107711310,LOC107595623,LOC107694335 other upstream 1105792 6850369 ~ 6858660 (-)
LOC122323893 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other upstream 1612044 7356621 ~ 7360143 (-)

Expression


Co-expression Network