LOC122323413 (eef1a1l1,LOC107742828,LOC107706208,LOC107654700,LOC107589443,LOC100526699,LOC103044018)


Basic Information

Item Value
gene id LOC122323413
gene name eef1a1l1,LOC107742828,LOC107706208,LOC107654700,LOC107589443,LOC100526699,LOC103044018
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 13494814 ~ 13498064 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217227.1
GTGATTTGCGGGTCGATCAGGGAGGGAGAGGAAGCGGGGGGTTGCAGCCCAGTCGGTCCTCCTCCCGTGTATAAATTCTCCAACCAAACcgtttttcttcctctttctgttACCTGGCAAAGGGGAGCAGCGGCTGAGAAGTGATCTCTCAATCTTGaaactAATCAATCATGGGAAAGGAAAAGACCCACATTAACATCGTGGTTATTGGCCACGTCGACTCCGGAAAGTCCACCACCACCGGACATTTGATCTACAAATGCGGTGGAATCGACAAGAGAACCATCGAGAAGTTCGAGAAGGAAGCTGCTGAGATGGGCAAGGGCTCCTTCAAGTACGCCTGGGTGCTGGACAAACTGAAGGCCGAGCGCGAGCGTGGTATCACCATTGACATTGCTCTCTGGAAATTCGAGACAAGCAAGTACTATGTCACCATCATTGATGCCCCTGGACACAGAGACTTCATCAAGAACATGATCACTGGTACTTCTCAGGCTGACTGTGCCGTGCTGATTGTTGCTGGTGGTGTTGGTGAGTTTGAGGCTGGTATCTCGAAGAACGGACAGACCCGTGAGCATGCCCTCCTGGCTTTCACCCTGGGAGTGAAACAACTTATTGTTGGAGTCAACAAGATGGACTCCACTGAGCCCCCCTACAGCCAGGCTCGTTTTGAGGAAATCACCAAGGAAGTCAGCGCCTACATCAAGAAGATCGGCTACAACCCCGCCAGTGTTGCCTTCGTCCCCATTTCTGGATGGCACGGTGACAACATGCTGGAGCCCAGCACAAATaTGGGCTGGTTCAAGGGATGGAAGATAGAGCGCAAGGAGGGTAATGCTAATGGTGTTACTCTTCTTGATGCCCTGGATGCCATTTTGCCTCCCAGCCGTCCCACCGACAAGCCCCTCCGTCTGCCACTTCAGGATGTCTACAAAATTGGAGGTATTGGAACTGTACCCGTGGGTCGTGTGGAGACTGGTGTCCTCAAGCCTGGTATGGTTGTGACCTTTGCTCCTGCCAACGTGACCACTGAGGTCAAGTCTGTTGAGATGCACCACGAGTCTCTCTCTGAGGCCACTCCTGGTGACAACGTTGGCTTCAACGTTAAGAATGTGTCCGTCAAGGACATCCGCCGTGGTAACGTGGCTGGAGACAGCAAGAACGACCCCCCTCAGGAGGCTGGCAGTTTCAATGCTCAGGTCATCATCCTGAACCACCCTGGCCAGATCTCTCAGGGCTATGCCCCAGTGCTGGACTGCCACACTGCTCACATTGCCTGCAAGTTTGCCGAGCTCAAGGAGAAGATCGACCGTCGTTCTGGCAAGAAGCTTGAGGACAACCCCAAGGCTCTCAAATCTGGAGATGCTGCCATTGTTGAGATGATCCCTGGCAAGCCTATGTGTGTGGAGAGCTTCTCTACCTACCCCCCTCTTGGTCGCTTTGCTGTGCGTGACATGAGGCAGACCGTTGCTGTTGGTGTCATCAAGAGCGTTGAGAAGAAAGTTGGTGGTAGCGGCAAGGTCACAAAGTCTGCACAGAAGGCTGCCAAGACCAAGTGAATTTCCCTTCATCACGGTGTTCCAAAGGTTGTGGAATGTTCTTCCCAACCTCCTGGAATTTCTCTAAACCTGGGCACTCTACTTAAGGACTGGCTTATGCTGATTAAAACCCATCGGAAAAGTTTTCGCAGGAAAGGAAACCAACTTGGATTTAAGTGTGGCTCCATTTATTGACTGATAGTGCCTCTTTCAGTTAAATTTGTGTTTAAAGGTTTAGAACTGCACCTGTTGCCACAGTAAAATTTGGAAAGAAGCTGCTGAATAAGAAACTAATAAAGGTATTAAAAATTGAA

Function

symbol description
eef1a1l1 Predicted to enable GTPase activity and translation elongation factor activity. Predicted to be involved in translational elongation. Predicted to be located in cytoplasm. Is expressed in several structures, including integument; musculature system; nervous system; pleuroperitoneal region; and skeletal system.

NR:

description
PREDICTED: elongation factor 1-alpha-like

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03231 EEF1A; elongation factor 1-alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217227.1 True 1852 mRNA 0.51 8 13494814 13498064

Neighbor

gene id symbol gene type direction distance location
si:ch1073-513e17.1 si:ch1073-513e17.1,LOC107697040,LOC107706204,LOC107742862,LOC107589448 coding upstream 4235 13482727 ~ 13490579 (+)
cap1 cap1,LOC107706206,LOC107697048,LOC107742832,LOC107696560 coding upstream 15495 13470196 ~ 13479319 (+)
kiaa0319l kiaa0319l,LOC107697050,LOC107706203,LOC107696545,LOC107742830 coding upstream 25684 13457329 ~ 13469130 (+)
si:ch211-199g17.9 syce1 coding upstream 53492 13439286 ~ 13441322 (+)
si:ch211-199g17.2 NA coding upstream 56331 13432069 ~ 13438483 (+)
LOC122323414 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC107591637,LOC107696561,LOC107742829,LOC108426655 coding downstream 211 13498275 ~ 13502198 (+)
LOC122323294 LOC107654670,LOC107589446,LOC107696517,LOC107706136,LOC107591657 coding downstream 5249 13503313 ~ 13506412 (+)
rpl11 rpl11 coding downstream 8977 13507041 ~ 13509479 (+)
eloa tceb3,zgc:55573,LOC107589441,LOC107742827,LOC107706212,LOC107654666 coding downstream 19061 13517125 ~ 13524932 (+)
pithd1 pithd1,LOC107654704,LOC107696572 coding downstream 27283 13525347 ~ 13527918 (+)
G132549 NA non-coding upstream 368197 13125877 ~ 13126617 (+)
G132547 LOC107591615,LOC107696587,LOC107731336,LOC107696584,LOC107552275 non-coding upstream 370848 13118716 ~ 13123966 (+)
G132541 psmb4,LOC107593590,LOC107669568,LOC107706179 non-coding upstream 391889 13101949 ~ 13102925 (+)
G132498 LOC107593576,LOC107731729,LOC107706171,LOC107696598 non-coding upstream 629219 12786644 ~ 12865595 (+)
G132755 klhl43,LOC107706211,LOC107589442,LOC107742826,LOC107696549,LOC107591641 non-coding downstream 13544 13511608 ~ 13512971 (+)
G132754 klhl43,LOC107589442,LOC107706211,LOC107742826,LOC107591641,LOC107696549,LOC108426671 non-coding downstream 14958 13513022 ~ 13513896 (+)
G132773 NA non-coding downstream 56947 13555011 ~ 13556679 (+)
G132774 NA non-coding downstream 63103 13561167 ~ 13561445 (+)
G132884 NA non-coding downstream 348718 13846782 ~ 13848115 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other upstream 158065 13309427 ~ 13336749 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other upstream 468788 13021417 ~ 13026026 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other upstream 1069736 12423290 ~ 12425078 (+)
LOC122323774 NA other upstream 1381917 12111279 ~ 12112897 (+)
LOC122323782 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other upstream 1970933 11522229 ~ 11523881 (+)
G133066 ext1c,LOC107654729,LOC107706241,LOC107592050,LOC107754264,LOC107592945,LOC107688378 other downstream 1289480 14787544 ~ 15212430 (+)
LOC122323257 tpmt,tpmt.1,LOC107591974,LOC107688424 other downstream 1336537 14834601 ~ 14837969 (+)
LOC122323518 LOC107654743,LOC107688368,LOC107602377,LOC108413484,LOC107706254,LOC107710329 other downstream 1580390 15078454 ~ 15192566 (+)
LOC122323314 LOC107602378,LOC107591987,LOC107706255,LOC107710332,LOC107688367,LOC107654747 other downstream 1810663 15308727 ~ 15313877 (+)
anxa14 LOC107706258,LOC107654687,LOC107710308,LOC107592054,LOC107688418 other downstream 1857544 15355608 ~ 15361845 (+)

Expression


Co-expression Network