rnf115b (si:ch211-81a5.1,LOC107656472,LOC107724083,LOC107599565)


Basic Information

Item Value
gene id rnf115b
gene name si:ch211-81a5.1,LOC107656472,LOC107724083,LOC107599565
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17772595 ~ 17779156 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217247.1
CACAGGAGCTATTAAAGAGTGAAGATGGCGGAGGCCGCCGCTGCTGCCGCTCCACGACAGCGGTTCTTCTGCCACTGCTGTCGAGGAGAAATCGACCCCAAGATGCCGGAATACGTTTGTCCCAGATGTGAATCTGGCTTCATTGAAGAGGTGTCAGAGAACTCAAATCTTCTTCAGAGTCGAGATGGTGCTGGCGAAGCTGCTGTCGGTGGAGATGACATGACTTCACAGTTCGCAGAGCTGTGGCAGCTGCTCTTCATGGAACATTCAGCGCTCCTCTCCGAGCCCACCATCACAGACGCGCTCCGCAGCCGCTCAGGGGTCGAGGCAGCAGTTGGTGATCCTGCCCCTGGGACAGCGGGACCCGGAGCGTCCGTGGAGGCGTCGTCAGACTGTGCAGAGCCTGTTCTCCTCCCTCAACAAAACCGCCAGCAGAGAAACTCTAGACCGGCTCAGGGACAGGCTGTGGAGGGGATTGTCCAGCAATTCCTGGCTGGTCTGTTTTCTAATTCTGACGGTGCAGGATCCCAAACCTCCTCGTGGTCTAGCGTGCTGCACTCAAACCCTGAGGATTATGCTTGGGGACAAGGAGGTCTGGACGTGGTCATCACACAGTTGCTCGGTCAGTCTGAAAACACCGGGCCCCCTCCTGCTGAGAAGGAAATAATCTCATCTCTCCCCACCGTTAGCATCTCCTCAGAACAGGCTGcatGCCGACTGGAATGCCCTGTGTGTAGAGAAGAGTACTCTGAAGGAGAATCTGTCCGACAGCTGCCCTGTCTGCACTACTTTCACAGCAACTGTATTGTACCCTGGCTACAAATGCACGACACCTGCCCTGTCTGCCGGAAAAGTCTGGATGGTGAAGACCAGGGTTTCCAGCCACAGACGGGACCTCCAGGGGCAATTCCCTCACCGACGAATGTAGAGGAGCGTAGCACATTTGAGACTCTTTAGCCTCCTTTTCCTTCACTATTCTGATCAATCCAGGACAGAGAGAGTGCTTCGCAGAGCCCCTAAACAGAGTGCCttctatttcaaaagacatttCAGCTGAGGCTCTTTCAGCCAGCATCTGTCCCATTACCATTTATATCCATTAATTGTGTTTCTGCGAAGTACAGTTGTGCCCAAAATCCTACCAATGATGTTTACAGTCCAACCCGAACTTACATATTTCAACTAACACAACACGTGGAACAAACGCGGTCTCCGAGGTGGGCCGCGGGCCTGGAGCTCATGAGCTCTGAGATAGATGATACAGATGTCTCAGGGGATACAGTTCAAGTTtcatgtgcatatttaatgGCATGGCACACGTTTACCCTATAGCTTCTTcaaagcttttgttttattacctcACGACGAAGTGAGCACACGGTTCACTTTCCCTTACCTGTCAGTGGATGACATCTGCTCCGCACATGCCTTCACTCTTATAAGGGCGTCATAGAAACGCAAAGATTTAGATGCTTGCTCAAGTTTTGCACTGTGAGGCGTTTCGTCTATTGTACTGTACATGTTTTGGGTTGATAGTTTGCACTGGTGTTTTCTGTTTGACATTGCTATTTTATGAGTTCTTGTGgatagacagaaaaagaaacatgtttattgtgttttaaagccgtttagatttctttttggtgcttttttttgtgctaatcATCAGGGATCCTTGACTGCTCCATAgtttaatattgaaaaacagTCCCACTCATAATTTGACATTACAATATGACATTATAGCACACAGATAAAAGGTAAAatgtttacaagaaaaaaaatacctttaCCTACAGGCCAACCTGTTACATATTGCACTCtcaaactaataaatatttaagagaaGAAA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF115-like isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217247.1 True 1852 mRNA 0.48 9 17772595 17779156

Neighbor

gene id symbol gene type direction distance location
ash1l ash1l,LOC107693346,LOC107739498,LOC107656475,LOC107724081,LOC107599509,LOC107589474 coding downstream 2808 17741746 ~ 17769787 (-)
lrrc71 lrrc71,LOC107739500,LOC107656478,LOC107724080,LOC107693350,LOC107577895 coding downstream 31580 17736186 ~ 17741015 (-)
setdb1a setdb1,LOC107724106,LOC107589406,LOC107693347,LOC107739578 coding downstream 37185 17721000 ~ 17735410 (-)
clk2a clk2a,LOC107724099,LOC107599513,LOC107589405,LOC107739501,LOC107656479,LOC107693351 coding downstream 52106 17711350 ~ 17720489 (-)
si:ch211-81a5.8 NA coding downstream 62487 17708014 ~ 17710108 (-)
scamp3 scamp3,LOC107724082,LOC107693344,LOC107656474,LOC107599508,LOC107739575 coding upstream 1663 17780819 ~ 17788099 (-)
crabp2b crabp2b,LOC107724072,LOC107589501,LOC107656471,LOC107599588,LOC107739613 coding upstream 13203 17792359 ~ 17794960 (-)
snx27a snx27a,LOC107750804,LOC107599501,LOC107678803,LOC103472691 coding upstream 137344 17916500 ~ 17929196 (-)
efna1a efna1a,LOC107678802,LOC107693333,LOC107739488,LOC107750807,LOC107589415,LOC103043830,LOC108437910 coding upstream 190328 17969484 ~ 17982455 (-)
efna3a efna3,efna3a,LOC107750808,LOC107739487,LOC107693331,LOC108272373,LOC108437928 coding upstream 252153 18031309 ~ 18101591 (-)
G134247 NA non-coding downstream 101901 17598064 ~ 17670694 (-)
G134252 NA non-coding downstream 126962 17620174 ~ 17645633 (-)
G134245 LOC107599519,LOC107739505,LOC107665494,LOC107724097,LOC107693358 non-coding downstream 178271 17589996 ~ 17594324 (-)
G133970 znf865,LOC107724093,LOC107589382,LOC107656606,LOC107599536,LOC108439897 non-coding downstream 427379 17325331 ~ 17345216 (-)
G133951 ccdc106b,LOC107656610,LOC108273335,LOC103027983 non-coding downstream 483215 17287667 ~ 17289380 (-)
G134272 NA non-coding upstream 9871 17789027 ~ 17789326 (-)
G134273 mrps21,LOC107739612,LOC107656470,LOC107724074,LOC107599587,LOC107589503 non-coding upstream 10395 17789551 ~ 17798825 (-)
G134299 celf3a,LOC107693341,LOC107739496,LOC107589410,LOC107750801 non-coding upstream 73016 17852172 ~ 17857186 (-)
G134298 NA non-coding upstream 89975 17869131 ~ 17871956 (-)
G134309 trim46b,LOC107678799,LOC107599500,LOC108241966 non-coding upstream 159791 17938947 ~ 17947834 (-)
LOC122324164 LOC107589398,LOC107693356,LOC107724088,LOC107589397,LOC107599520,LOC107665487,LOC107724089 other downstream 156318 17613446 ~ 17616277 (-)
G133948 LOC107693373,LOC107724108,LOC107739520,LOC107599537 other downstream 438361 17330697 ~ 17334234 (-)
G133949 NA other downstream 487851 17283332 ~ 17284744 (-)
LOC122323474 LOC107589464,LOC107589461,LOC107656564,LOC107739585,LOC107599573,LOC107656565,LOC107739586,LOC107599590,LOC107693268,LOC107739622,LOC107589465,LOC107724065,LOC107656563 other downstream 553805 17213961 ~ 17218790 (-)
trnap-ugg_15 NA other downstream 871819 16900705 ~ 16900776 (-)
s100a10a s100a10a,LOC107599503,LOC107693282,LOC107589481,LOC107589504,LOC103356278 other upstream 150533 17929689 ~ 17935436 (-)
G134318 NA other upstream 231726 18010882 ~ 18011399 (-)
si:dkey-266f7.5 NA other upstream 390367 18169523 ~ 18188029 (-)
cks1b cks1b,LOC107753514,LOC107589507,LOC107599584,LOC108433716,LOC103394526 other upstream 446453 18225609 ~ 18241613 (-)
LOC122324083 LOC107589493,LOC107693246,LOC107734014 other upstream 908193 18687349 ~ 18691249 (-)

Expression


Co-expression Network