atat1 (atat1,LOC107584296,LOC107694337,LOC107754836,LOC107711335,LOC107677465,LOC107595600)


Basic Information

Item Value
gene id atat1
gene name atat1,LOC107584296,LOC107694337,LOC107754836,LOC107711335,LOC107677465,LOC107595600
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6704840 ~ 6716985 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217258.1
CCAAAGTTGTGCGTCGTTGCCAAGAGGAAACGGAAATAAATCTTCCGAAGCCGCAGACTTCTGCAGCTGtctaatagtttttttgtttacgtTTTAGCGCTATATCAAGAGATATAGACTCTAAGAGATTAGCAGGCGCTGCGCGACCTCTGCGGCATCGCGTCGCCTCCTGCAGGCGCGCGTGTCGGTGTACTACAGCTGACCGCCGGCGCTCGTCCCGCTGCACAAGGGAGGGACACAAACAATGGGAGCGCAGAAGAAGCGCTGCTAGCGCCGCCGTACACCCGTGCCTTCACTGCTACCGAAGCGGCACCGATGTGGAGCTGGTGTTTTAAGCGCGGGCCGGTGATGCAGTGAGAATCGATTGGCACTGTGATAAATGCATCTGTATCTGCGGCGGGGCATTAGTAGTGTATTGTCTTAAGATTTCAGTTCCGTCCTCACGATGGATTTCCCTTTCGACCTGAATGCGCTTTTCCCCGAGAGAATTACGGCGCTGGATAACAACTTGAGTGCAGGTCGGAAAGCGCACGGGAGGCCAGATCCTCTTCTTCAGATCAGCACGGTTCTAGATGAGCTGGGCAAAGCCTCCTCTAAGGCCCAGCAGCTGCCTGCTCCTATAACCAGCGCTGCTAAGCTCCAGGCCAACAGACACCACCTCTACCTCCTGAAAGACGGAGAGCAGAACGGAGGAAGGGGGGTCGTTGTTGGCTTTCTGAAGGTCGGCTACAAGAAGCTGTTTTTACTCGACCAACGGGGGGCGCATTTGGAAACCGAGCCGTTGTGCGTGCTGGATTTCTACGTGACCGAGACGCTGCAGAGACACGGCTATGGACTCGAGCTCTTTGACTTCATGCTGAAACACGAACGGGTGGAGCCTGAACAGATGGCGTACGATAGACCTTCTCCTAAATTCCTGTCATTTCTAGAAAAGCACTATGATCTCAAGAACAGCGTTCCTCAGGTGAATAACTTTGTGGTGTTCAGTGGATTCTTCCAGAGTAGATCAGGAACACCTCCCTCCCCTTCGACGGATCAGGGGATGTACGGATTTTTCGGTCCAGTTGAGAAAAGCTCACCCAAAAAAGCCAGAGGGAGAGATCAAGCCGTATTCACTAATGGAAAGAGAAGTGGTTCGGGAGGAGCAGAGGGCTCTCCCCTGGCCATTCGTTCGCCCCGCGGGTCCCCCCCTCTCTCCCCCTCTGCTTCCGTCATCTCCTCAGTCCCGTTCGCTCAGCGTGGGATCCTCCCCCAGCCGGGCCCCGCTCCGCCCCGCCGCGGCCCCCGGGACCCCCTCCTCCCAGCTCAACGACAGCTGCAGGGCCAAGCGCACCAGCCACCAGGGTCTGGTTGCCAGGAGCAACCTCTACAGTCGCCATATCAACAGCCGAGACCTCGGGCAATTATTGGCGGAACAGCAGAAGAGACCCTTGAAGCTTCCAGCTGTCGTGTGTGCTCCTCAGGGCTGACAGCAGAGCtctgtgagagagtgtgtgacaCAGGGGCAAACGCAGATGCAGtgggacacaaacacacttcagaAAGACCGCATCTTCAAGGCCAGGTTGTGTCTCTTCCGACGATTGCCGGTGCCAAGAAAGATCACGTTCAGGAGCAGACCTCCATAACACCCCTGGACCGCAAAGAAGAGCTGCAGACCAAAGCGTCAAAGATCAGAGCAGAGGAGTGGAGGAAAGGTGGAGCGGCTGAGACGGAGAGGGGTGCAGGGAGAGGAGGATGGTCGTGGACGGTCGGGGAGAGCCGCTGTACGGCCCAGTGGGTCCGACAGAAACAAGAGTATCGCAGCACACGGCCCTGGTGACCGAAAGGGCTACTTCACACGAAGATTCAAATTCTGTTGTTAATTACTCATCCTTGTATCGTTCCAGACCGTTCATTTTCAAAacccaaataaatatatttttgatgaactTGAGACATTTCTGAAgctcccatagacagcaacacaaggCCCAAAAAAGTAGTAAggatattgttaaaagtgcttcAGCcttaatgttatgaagctacgtGAATGCTTTTCATGTGCAAAGtagacaaaaataacaaattttctGACGTAGAAAGACTGACGCGTAagagaattgttgaataaagtcattattttagttttctttgctcacaaaaagcattctcgaagcttcataacattaatgttgaaccactgatggcagatggactgtTTTAGAGGTATTTTAAGGTCTTTGCTACCATTTTGGGCCTTGAAAttgtcagttgtgttgcttacTATGGAGGAAAAGAAAtcattaaattcaaaatgtcttcatttgaaacaacatgagtgTGACTAATTAATGACggacattttgtttttggatgaactgtccctttaagaacaGAAAAGGGCATCGCaaagaaatgaggaaaaaaagatttttagaaaTTTTTATTAAACCACAAAAGTGAAAAAGACCTCTAATGAAAATAACATCAACAGCcatatgtaacttttttttttatttttttatcagtccTATTTATAAACTACAGCTATTCATTTTATGGCTTGTGCTTTTATAATCGCAATTCTATAATATGatcttttatcatgtttttttacaaacggGTCTATGCAAGtacagacgtttttttttttttttttgtggaaataaattaaa

Function

symbol description
atat1 Enables tubulin N-acetyltransferase activity. Acts upstream of or within alpha-tubulin acetylation. Predicted to be located in several cellular components, including clathrin-coated pit; focal adhesion; and microtubule cytoskeleton. Orthologous to human ATAT1 (alpha tubulin acetyltransferase 1).

NR:

description
PREDICTED: alpha-tubulin N-acetyltransferase 1 isoform X6

GO: NA

KEGG:

id description
K19573 ATAT1, MEC17; alpha-tubulin N-acetyltransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217258.1 True 2660 mRNA 0.49 14 6704840 6716985

Neighbor

gene id symbol gene type direction distance location
ddx39b ddx39b,LOC107584302,LOC107754831,LOC107694345,LOC107595593,LOC103042292,LOC108272881 coding upstream 45014 6649299 ~ 6659826 (+)
tnfa LOC107694347 coding upstream 187478 6515100 ~ 6517362 (+)
nelfe nelfe,LOC107754803,LOC107584366,LOC107694353,LOC107677468,LOC107595590,LOC107711324 coding upstream 227690 6473609 ~ 6477150 (+)
LOC122323487 LOC107694355,LOC107754822,LOC107595588,LOC107711322 coding upstream 261712 6435232 ~ 6443128 (+)
gon4la LOC107754817,LOC107694363,LOC107584344 coding upstream 327241 6365518 ~ 6377599 (+)
c19h5orf49 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 coding downstream 50656 6767641 ~ 6769745 (+)
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338,LOC107595605 coding downstream 142084 6859069 ~ 6877006 (+)
irx4b irx4,LOC107754842,LOC107584360,LOC107691545,LOC107595627 coding downstream 316598 7033583 ~ 7038126 (+)
mrpl36 mrpl36 coding downstream 326454 7043439 ~ 7044961 (+)
LOC122323892 vars2,LOC107584340 coding downstream 639111 7356096 ~ 7376316 (+)
G131093 LOC107694325,LOC107711328,LOC107754828,LOC107584304,LOC107677461,LOC107595615 non-coding upstream 65611 6638481 ~ 6639229 (+)
G131016 LOC107677454,LOC107595587,LOC107584310,LOC107694359,LOC107754821 non-coding upstream 295099 6405385 ~ 6409741 (+)
G131010 NA non-coding upstream 310883 6392916 ~ 6393957 (+)
G130950 NA non-coding upstream 370596 6331665 ~ 6334244 (+)
LOC122324219 NA non-coding upstream 440886 6255006 ~ 6263954 (+)
G131241 NA non-coding downstream 239584 6956569 ~ 6956786 (+)
G131245 NA non-coding downstream 259545 6976530 ~ 6976854 (+)
G131249 NA non-coding downstream 264965 6981950 ~ 6982175 (+)
G131252 NA non-coding downstream 296904 7013889 ~ 7014418 (+)
G131256 NA non-coding downstream 315276 7032261 ~ 7032591 (+)
ppp1r11 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other upstream 8636 6691974 ~ 6696204 (+)
G131042 gabbr1b,LOC107595614,LOC107677456,LOC107584305 other upstream 178760 6519920 ~ 6526080 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other upstream 216080 6463083 ~ 6488760 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other upstream 303542 6371835 ~ 6401298 (+)
LOC122323983 tac1,LOC107702667,LOC107731560,LOC107754813,LOC107672864 other upstream 781867 5785130 ~ 5922973 (+)
G131183 NA other downstream 116884 6833869 ~ 6836858 (+)
med10 med10,LOC107691542,LOC107595625,LOC107584362 other downstream 183650 6900635 ~ 6902398 (+)
lpcat1 lpcat1,LOC107584290,LOC107694330,LOC107754844,LOC107691501 other downstream 329628 7046613 ~ 7066858 (+)
LOC122323953 sox4a,LOC107584287,LOC107694328,LOC107754846,LOC107711341,LOC107691508 other downstream 517486 7234471 ~ 7257652 (+)
LOC122323847 tmem57a,tmem57,LOC107584286,LOC107745723,LOC107687072 other downstream 734065 7451050 ~ 7454765 (+)

Expression


Co-expression Network