irx4b (irx4,LOC107754842,LOC107584360,LOC107691545,LOC107595627)


Basic Information

Item Value
gene id irx4b
gene name irx4,LOC107754842,LOC107584360,LOC107691545,LOC107595627
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 7033583 ~ 7038126 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217259.1
GGTTCCTGGGCGGTCATCAATCATGCGGGATCGAGCTGTCTGTGCTCCGGAGTCAGACGCGTGATTGGCTGCTGGCGGGCAGGGAGCCCGAACACGTCCTCATTAATGCGCGCGAGACCCCGCGGGCTCCTCGGGAGGACGCGAGCGCATCGTTTGACTCCGAAGTTACGCCGCGGCTGCGGGAAAGTGTTCCGCCGTGTGAACAACAACTTTTGCGTGATTCTCGACAGCACGCGTTTGTTACCCGGACCTTTAAAATCTGTCGCCGTGACGTCAGCGTCACCGGCGTTTAAAACGGCGTGCGACCGAGCCAACGTTtgttatgggttttttttaacttcaactACGGCGCTGCACCGCGCTGAACCTGGGTCGCGCTGCACTTTTTTTTCGCCCCCGTTTGCATTGCTGGTTTGTACAAGGCGCAAACCGAAACCAGAACGAGACGCTTATCTCCGGTTAATGGGAGATTTTGGTGATGAACTGATGACCCGAAGCGGGACTGCAGCTTCCTCTGGGCTGGACACTCATCATGTCATTTACACAGTTTGGCTATTCCTATCCCGCAGCATCACAGCTTTTAATGTCTTCTAACGCTCTGAGCTCCTGCTATGAGTCTAGTAGCTCACTGCTGGACTCTGGAGTGGCAGCTTCTCCTCAAAACTCTCTTTATTGTCCGGTATATGAAAGTAGGCTTGTGGCCTCCAGCCGGCATGACCTGATCCCTACTGCTGTCTATGGCAACTCCTGCTCAAAGAGTCACAGTTACGATACCTGCAGCACTTATGTGCCAGATTCAACCTCATACTATCCACTGGGTAAACTCGGTGAGAAAGATGGAGTGGGAACAGGACATTCAAGAGTCACCCAAAGCTCAACATACTACCCTTACGACTACCCAATTGGACAGTACCAGTATGACAGATATGGACGTGTTTTTAGGTATGGATCTGTAGATGTGGGCACGAGAAGAAAAAATGCCACCAGAGAGACCACCAGCACACTGAAAGCGTGGCTGCAGGAGCATAAGAAGAACCCGTATCCCACCAAGGGCGAGAAGATCATGCTGGCCATCATCACTAAGATGACCCTCACGCAGGTGTCCACCTGGTTCGCCAACGCGCGCCGGAGACTCAAGAAGGAAAACAAGATGACTTGGTCACCGCGCAACAAGACCTCAGATGAGAAAGAGTGTGACGATGACCAAGAAGATCTGGATGAGTTGCACGGGGAGCCGATAAAAACCGAGCAAGAATTCAACGCTCCAGACAACCACGGGAAGGATGATGCGGATCAACTTCACAGCGATCTGGAAGATTTCGATCTAGTGGAGTCGGATGGCTCGGAGTGCGAGTCGAAGCCATCCTTCGTCGCTCGCGTCCGTTCAGAGACCAGCGCGTGTCCAGATAACCGGTTTGAAGAGGCGTTCCACGAATCCGTCACCGAGCTCCCGACAGATGTCCGCGAATTTAACGAAGACCGATTAAGACTTGCCGCTGAAGACAACCAGACAGCGAAGTTCTACCTTCAACAAGGCCAAAAGACCATTGGGATCAAGCCAAAAATCTGGTCGCTTGCGCAGACTGCTACGTCGCTAAACCAAGCCGATTACTCATCGTGCATGCATAAAGGAACTTCGTGCTCTTCCTCAAACTGTGACTCAGACACAGACGTAACAAAGAGGAAACAAGAGTCTCCAGTGGCCACTCTTAGAAACTGGGTTGACGGTGTGTTTCACGATCCTTTATTCAGGCACACCGACTTAAACCAAACGTTCAGCAGCTCCACAGAATTATGGACCGAAGGCATTTCCTCGCAGAATAACTACCATAAACACTCAGGACCTATTACTGCTTCTCAACATACTTCATAACTGtgacactgttttttttgtttgttttttttctctctccatacTTTCTGGTTGCACCAAACCGAATAGTTAAGCCATCACAAAAGCGACACACTAggtttacttatttattagtTTCATTCTGTAAGCTGATGTCATATAAGACCTCCTGAAAGTCCGATGAACTTTTATATTTAGAGCGTACCAACACATCAACGTAGATTTAGGAAGATTGGCACCTTTtcacttaagaaaaaaaaaccctgattcTGTGTGTTAAAGAAAGTGATCACTGCTGTATGATAGCACGGTACACAGATTCCCCCAGTCTGAAATCTCAGCTGCTGATCTCACATCCTCAGAAATAAAGAGTTAATTTGATGGAAAAACCCAATGTtcgctgtccgtggtgctgaaacTCTCCCATAAGCAAGTTGGCCACCAgaggtttttttatttggttgcaTTTATTGTTGAAAAGACGTTTTTTTTCTCCCGGTGGAATCACACAACATGATTTTACATACATCAATACCTTGAACCCTTCCACGCAAATGTATAGTCATGATCACTCAGCCGTGACAAATATAAATACTCAAGGGGTCTTGCTGTTAAACTGTTAACTCAACCTTACTCCTAAAAGTCGTAGTCAGTGAAGCgttgttttttcattaagtGACTGATATGGCaagctgttttaatatttatcccTTACTAACTTAAAacgattgtttgtttgtttttctgtcgtTACTAtagtattattgttgttattagtatttttaaaaactagtAGGTTATCAAATAGTGACTAGTATTTTTTGGTCACATATATGAGATTTATAGTTACAAGCTACTTTTTTTCATCACACTagttacattaattttaatagtttttttttcactgacaagacagaatttcacat
>XM_043217261.1
GTTCCTGGGCGGTCATCAATCATGCGGGATCGAGCTGTCTGTGCTCCGGAGTCAGACGCGTGATTGGCTGCTGGCGGGCAGGGAGCCCGAACACGTCCTCATTAATGCGCGCGAGACCCCGCGGGCTCCTCGGGAGGACGCGAGCGCATCGTTTGACTCCGAAGTTACGCCGCGGCTGCGGGAAAGTGTTCCGCCGTGTGAACAACAACTTTTGCGTGATTCTCGACAGCACGCGTTTGTTACCCGGACCTTTAAAATCTGTCGCCGTGACGTCAGCGTCACCGGCGTTTAAAACGGCGTGCGACCGAGCCAACGTTtgttatgggttttttttaacttcaactACGGCGCTGCACCGCGCTGAACCTGGGTCGCGCTGCACTTTTTTTTCGCCCCCGTTTGCATTGCTGGTTTGTACAAGGCGCAAACCGAAACCAGAACGAGACGCTTATCTCCGGTTAATGGGAGATTTTGGTGATGAACTGATGACCCGAAGCGGGACTGCAGCTTCCTCTGGGCTGGACACTCATCATGTCATTTACACAGTTTGGCTATTCCTATCCCGCAGCATCACAGCTTTTAATGTCTTCTAACGCTCTGAGCTCCTGCTATGAGTCTAGTAGCTCACTGCTGGACTCTGGAGTGGCAGCTTCTCCTCAAAACTCTCTTTATTGTCCGGTATATGAAAGTAGGCTTGTGGCCTCCAGCCGGCATGACCTGATCCCTACTGCTGTCTATGGCAACTCCTGCTCAAAGAGTCACAGTTACGATACCTGCAGCACTTATGTGCCAGATTCAACCTCATACTATCCACTGGGTAAACTCGGTGAGAAAGATGGAGTGGGAACAGGACATTCAAGAGTCACCCAAAGCTCAACATACTACCCTTACGACTACCCAATTGGACAGTACCAGTATGACAGATATGGGTATGGATCTGTAGATGTGGGCACGAGAAGAAAAAATGCCACCAGAGAGACCACCAGCACACTGAAAGCGTGGCTGCAGGAGCATAAGAAGAACCCGTATCCCACCAAGGGCGAGAAGATCATGCTGGCCATCATCACTAAGATGACCCTCACGCAGGTGTCCACCTGGTTCGCCAACGCGCGCCGGAGACTCAAGAAGGAAAACAAGATGACTTGGTCACCGCGCAACAAGACCTCAGATGAGAAAGAGTGTGACGATGACCAAGAAGATCTGGATGAGTTGCACGGGGAGCCGATAAAAACCGAGCAAGAATTCAACGCTCCAGACAACCACGGGAAGGATGATGCGGATCAACTTCACAGCGATCTGGAAGATTTCGATCTAGTGGAGTCGGATGGCTCGGAGTGCGAGTCGAAGCCATCCTTCGTCGCTCGCGTCCGTTCAGAGACCAGCGCGTGTCCAGATAACCGGTTTGAAGAGGCGTTCCACGAATCCGTCACCGAGCTCCCGACAGATGTCCGCGAATTTAACGAAGACCGATTAAGACTTGCCGCTGAAGACAACCAGACAGCGAAGTTCTACCTTCAACAAGGCCAAAAGACCATTGGGATCAAGCCAAAAATCTGGTCGCTTGCGCAGACTGCTACGTCGCTAAACCAAGCCGATTACTCATCGTGCATGCATAAAGGAACTTCGTGCTCTTCCTCAAACTGTGACTCAGACACAGACGTAACAAAGAGGAAACAAGAGTCTCCAGTGGCCACTCTTAGAAACTGGGTTGACGGTGTGTTTCACGATCCTTTATTCAGGCACACCGACTTAAACCAAACGTTCAGCAGCTCCACAGAATTATGGACCGAAGGCATTTCCTCGCAGAATAACTACCATAAACACTCAGGACCTATTACTGCTTCTCAACATACTTCATAACTGtgacactgttttttttgtttgttttttttctctctccatacTTTCTGGTTGCACCAAACCGAATAGTTAAGCCATCACAAAAGCGACACACTAggtttacttatttattagtTTCATTCTGTAAGCTGATGTCATATAAGACCTCCTGAAAGTCCGATGAACTTTTATATTTAGAGCGTACCAACACATCAACGTAGATTTAGGAAGATTGGCACCTTTtcacttaagaaaaaaaaaccctgattcTGTGTGTTAAAGAAAGTGATCACTGCTGTATGATAGCACGGTACACAGATTCCCCCAGTCTGAAATCTCAGCTGCTGATCTCACATCCTCAGAAATAAAGAGTTAATTTGATGGAAAAACCCAATGTtcgctgtccgtggtgctgaaacTCTCCCATAAGCAAGTTGGCCACCAgaggtttttttatttggttgcaTTTATTGTTGAAAAGACGTTTTTTTTCTCCCGGTGGAATCACACAACATGATTTTACATACATCAATACCTTGAACCCTTCCACGCAAATGTATAGTCATGATCACTCAGCCGTGACAAATATAAATACTCAAGGGGTCTTGCTGTTAAACTGTTAACTCAACCTTACTCCTAAAAGTCGTAGTCAGTGAAGCgttgttttttcattaagtGACTGATATGGCaagctgttttaatatttatcccTTACTAACTTAAAacgattgtttgtttgtttttctgtcgtTACTAtagtattattgttgttattagtatttttaaaaactagtAGGTTATCAAATAGTGACTAGTATTTTTTGGTCACATATATGAGATTTATAGTTACAAGCTACTTTTTTTCATCACACTagttacattaattttaatagtttttttttcactgacaagacagaatttcacat

Function

symbol description
irx4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell development; neuron differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within heart development. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: iroquois-class homeodomain protein irx-4-B-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217259.1 True 2778 mRNA 0.46 5 7033583 7038126
XM_043217261.1 False 2765 mRNA 0.46 5 7033584 7038126

Neighbor

gene id symbol gene type direction distance location
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338,LOC107595605 coding upstream 156577 6859069 ~ 6877006 (+)
c19h5orf49 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 coding upstream 263838 6767641 ~ 6769745 (+)
atat1 atat1,LOC107584296,LOC107694337,LOC107754836,LOC107711335,LOC107677465,LOC107595600 coding upstream 316598 6704840 ~ 6716985 (+)
ddx39b ddx39b,LOC107584302,LOC107754831,LOC107694345,LOC107595593,LOC103042292,LOC108272881 coding upstream 373757 6649299 ~ 6659826 (+)
tnfa LOC107694347 coding upstream 516221 6515100 ~ 6517362 (+)
mrpl36 mrpl36 coding downstream 5313 7043439 ~ 7044961 (+)
LOC122323892 vars2,LOC107584340 coding downstream 317970 7356096 ~ 7376316 (+)
LOC122323846 adcy3,adcy3a,LOC107703925,LOC107688975 coding downstream 339628 7377754 ~ 7395725 (+)
maco1a tmem57a,LOC107584286,LOC107687072,LOC107745723,LOC107709293,LOC107691503 coding downstream 543120 7581246 ~ 7590155 (+)
marcksl1b marcksl1,marcksl1b,LOC107745720,LOC107691511,LOC107584334 coding downstream 723530 7761656 ~ 7764418 (+)
G131256 NA non-coding upstream 992 7032261 ~ 7032591 (+)
G131252 NA non-coding upstream 19165 7013889 ~ 7014418 (+)
G131249 NA non-coding upstream 51408 6981950 ~ 6982175 (+)
G131245 NA non-coding upstream 56729 6976530 ~ 6976854 (+)
G131241 NA non-coding upstream 76797 6956569 ~ 6956786 (+)
G131272 NA non-coding downstream 177892 7216018 ~ 7217504 (+)
LOC122324170 NA non-coding downstream 346325 7384451 ~ 7387980 (+)
LOC122323469 adcy2a,LOC107551198,LOC107664610,LOC100707801,LOC107574671,LOC102200234 non-coding downstream 390418 7428544 ~ 7443464 (+)
G131339 e2f3,LOC107687070,LOC107745724,LOC107709295,LOC107691507,LOC107584335,LOC107562874 non-coding downstream 406476 7444602 ~ 7445080 (+)
G131341 LOC107687071,LOC107584285 non-coding downstream 407319 7445445 ~ 7577849 (+)
med10 med10,LOC107691542,LOC107595625,LOC107584362 other upstream 131185 6900635 ~ 6902398 (+)
G131183 NA other upstream 196725 6833869 ~ 6836858 (+)
ppp1r11 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other upstream 337379 6691974 ~ 6696204 (+)
G131042 gabbr1b,LOC107595614,LOC107677456,LOC107584305 other upstream 507503 6519920 ~ 6526080 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other upstream 544823 6463083 ~ 6488760 (+)
lpcat1 lpcat1,LOC107584290,LOC107694330,LOC107754844,LOC107691501 other downstream 8487 7046613 ~ 7066858 (+)
LOC122323953 sox4a,LOC107584287,LOC107694328,LOC107754846,LOC107711341,LOC107691508 other downstream 196345 7234471 ~ 7257652 (+)
LOC122323847 tmem57a,tmem57,LOC107584286,LOC107745723,LOC107687072 other downstream 412924 7451050 ~ 7454765 (+)
ldlrap1a ldlrap1a,LOC107709294,LOC107691509,LOC107562879,LOC107687073,LOC107745728 other downstream 553388 7591514 ~ 7605226 (+)
G131351 NA other downstream 570814 7608940 ~ 7615288 (+)

Expression


Co-expression Network