LOC122323460


Basic Information

Item Value
gene id LOC122323460
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 4391699 ~ 4393255 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217299.1
CATATGAAGATGTGAAAGGGTGCATGTGCAgtcactttcagttttagtcGACCTTAACAACGCAGACATGAGCAAGGCGTGGGTACAAAACCTGAAACAGGTGATGAAAAGTCATACTGGATCAAATGTAATAACTGGCTTTTTAATGGTGCTGATTGAGAAACTCGTGGAGATGGACTTTGCATGTCCTTGTGATCCAAAGACGAACCTGGCGTTTTCCTTGGCATATTTTTTGGTTCCTGCTCTGTTCTCCAGCACACtcatgttttatattcataGCCCGGAGTGCAAAAGCAAGTGTCTGCTCTCCACTATAACCTGCATCATTCCTGCTGGTACTTGGGTCCTGCTGCTGTTCTTCGACGGACAGTACTTCGCCTGTGCACGGACCTCCTGGGAAGGACTGACGGTCCACACGGATATATCTGCTTCAACAACATGGTGTGAGCCTTTTATGAAGTATGGCAACATCACCGCAAAGCAAAGGGAGTTTTTTGGCTTTCGAAATATTTCGCAGGTAGTGGCACTGTCTCTGCTGCTTGTGATCTCCGGGGTCCTGTTTATAATTGGAGGGATAAGATGCACCCGAGGAAAAAAAGAACCTAAAGCTGAACGAGTGGAAATGGAGGAAGCAGGTCAAAGTTCATCAAGCCCTCCTGAAAGATCTTCGTTGATGGAGGGTGCACAAACACAGAGGCTTTGAACAGAGATTTTGCAAAGCAACCCTTAATGTCGAGAAATCTTATGTTTTAAGGAGGGAAATAATGTCTGTATCTATCTGTTTCCAAAATGTCTTGCTGTCAACCACATCCTGGTTgctgacttctttttttttttttacacttttggcTTGGTACTTTCTTTGAAGTTTGTAGAAAAACACAAGTGCAAAAAACTGCATCCGCTCGCTGTCAGTTGCTGCTTTGCTTTAAGGTATGCGTGGAGGTTATcaagtgaaaataaaagcaatgttGACAGACTTATTTGACCTGCAATTAAGCAAAAAGGTTTCCTCGAAGGATCCTCACTCGCAAAATGCGTGCGTTGTGTTTTAcgtttgattttttaaattcatttttaatcatttattacagAATCGTTTTATAATCATTAGTCATTCACCAGATTTATCATTGGAtcatttttgaattatttgctTGCTTTTATCACTTGATTATTTTGATCATTCATAtcgttatattttttatttagtgtttttattgtttattcatttatcttgtttctatattttatatttcttatcgATTTTTCCTTGCTCATGTATTCTCACTGTTGTTTAATCTCATGCTTGTGGGGTTTCATGAACCGTTGTCTGTATGAATAGATAAAgatgaaatgtttgaatttgtGCTGAACATTGAGACACGCACATCTACGAGATTGTTCGATAAACTCTGTTGCTCTTTGCCATCA

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217299.1 True 1434 mRNA 0.39 2 4391699 4393255

Neighbor

gene id symbol gene type direction distance location
fam210aa LOC107668710,LOC107746929,LOC107675659,LOC107566562,LOC107754921 coding upstream 89470 4297248 ~ 4302229 (+)
LOC122324024 slc25a32a,slc25a32,LOC107675661,LOC107668716,LOC107754908,LOC107566558 coding upstream 181569 4201233 ~ 4210130 (+)
LOC122323824 NA coding upstream 338542 4049910 ~ 4053157 (+)
LOC122323815 NA coding upstream 499734 3863228 ~ 3891965 (+)
LOC122323814 NA coding upstream 529089 3859464 ~ 3862610 (+)
ncaldb ncaldb,ncald,LOC107552316,LOC107550096,LOC107672870,LOC107698641,LOC105006551 coding downstream 24261 4417516 ~ 4430925 (+)
ywhaz ywhaz,LOC107672854,LOC107698656,LOC107550094 coding downstream 74470 4467725 ~ 4480412 (+)
rnf19a rnf19a,LOC107748363,LOC107672852,LOC107738318 coding downstream 109984 4503239 ~ 4528094 (+)
parp10 LOC107672844,LOC107748360,LOC107550091,LOC107698651,LOC107552322,LOC107738320,LOC107552308 coding downstream 148441 4541696 ~ 4551743 (+)
cpsf1 cpsf1,LOC107698636 coding downstream 159377 4552632 ~ 4573445 (+)
G130421 NA non-coding upstream 9052 4380724 ~ 4382647 (+)
G130383 NA non-coding upstream 123575 4267665 ~ 4268124 (+)
G130381 NA non-coding upstream 125591 4265824 ~ 4266108 (+)
G130338 NA non-coding upstream 192442 4176268 ~ 4199257 (+)
G130336 NA non-coding upstream 231672 4150677 ~ 4160027 (+)
G130426 NA non-coding downstream 14368 4407623 ~ 4408091 (+)
G130449 NA non-coding downstream 104694 4497949 ~ 4498186 (+)
G130604 NA non-coding downstream 403701 4796956 ~ 4802192 (+)
G130599 LOC107563917 non-coding downstream 432189 4825444 ~ 4959162 (+)
G130612 NA non-coding downstream 457629 4850884 ~ 4989753 (+)
G130372 mc5ra,LOC107746932,LOC107552309,LOC107675655,LOC107754914,LOC107566557 other upstream 132614 4244768 ~ 4259085 (+)
G130208 LOC107714468,LOC107559403,LOC107569308 other upstream 630714 3759867 ~ 3760985 (+)
sh3bgrl3 sh3bgrl3,LOC107700758,LOC107689536,LOC106570239,LOC105933927,LOC103368842 other upstream 815506 3572262 ~ 3576193 (+)
G130077 NA other upstream 1297985 3093067 ~ 3093714 (+)
phactr4a phactr4a,LOC107550657,LOC107687470,LOC107595895,LOC107689543 other upstream 1413283 2959593 ~ 2978416 (+)
ptpn2b ptpn2b,LOC107738314,LOC107552315,LOC107672871,LOC107748370,LOC107666587,LOC108438851 other downstream 1330 4394585 ~ 4406579 (+)
znf706 znf706,LOC107672881,LOC103394271,LOC107748367,LOC107552318,LOC107698658 other downstream 66620 4459875 ~ 4464904 (+)
pabpc1b pabpc1b,LOC107672855,LOC107698655,LOC107552320,LOC107748365,LOC107738317,LOC107550093 other downstream 90445 4483700 ~ 4493780 (+)
LOC122324250 NA other downstream 94726 4487981 ~ 4488115 (+)
LOC122324251 NA other downstream 96126 4489381 ~ 4489515 (+)

Expression


Co-expression Network