lin28ab (lin28a,LOC107690946,LOC107708696,LOC107595909,LOC107732914)


Basic Information

Item Value
gene id lin28ab
gene name lin28a,LOC107690946,LOC107708696,LOC107595909,LOC107732914
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 2102744 ~ 2115503 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217319.1
TGTTTCCTCTGACATGAGTCAGCAACCTGCGCTCTTGTCGAGAGTGCGTTTGGGAAGCTGATGAACGGCATCCAAGAATCctgcatgaatatttaattggaAAGTGGATGCGGCTTTAATTGTGTTTGCGGGTGACGGGCCGCATGACAATCCAAATACAGTCATCAGAGCAGAACCACAGCAGGAGCCCCGACTGACTCACTGCTCCTCATTCACTCACGCACGCTATAAAATGTCTTCGAGGAAAGGAATAGTTGGACTGACACTTTCGAGTTCTCGCAGGCTGGATAGCGGTCCTCATTAAAGAGGAAACCAACGGTTTTTAAGAAGTCAAGATGCCCCCGACGAATCCGCAACTCGGTCGCGCAGGGGGCTGTGCAAAGACGGAGGAGGAGGAAGCCGCGAGCTCCGAGGAAGACTCGAGCTCGGTTCGTGGAAGTGGGGTGTGTAAATGGTTTAACGTGCGGATGGGCTTTGGCTTTCTGTCCATGACCCATCGGGAGGGCATCTGTCTGGACTCCCCTGTGGATGTGTTCGTTCAtcagAGCAAGCTTCATATGGAGGGCTTCCGCAGTTTGAAGGAAGGAGAAGCTGTGGAGTTCACCTTCAAAAGGTCCTCTAAGGGTCTGGAGTCCTTACGGGTGACGGGGCCAGGAGGGGTGCCATGCGTAGGCAGCGAGAAGAAACCCAAAGGCACCCAAAAACGCCGTTCAAAAGGAGATCGATGCTTCAACTGTGGAGGGCCGAATCATCACGCCAAAGAATGCCAGCTGCCGCCTCAGCCAAAAAAGTGCCATTTTTGCCAAAGCATCACCCACATGGTGGCCAACTGTCCAATCAAAGCACAGCAGTTGTCACCGGGATCTCAGGGAAAATCAACAGCCTCCACCACAGGAGAAGAAGAGGACATGAGCCACACCCCCTTCCCTCCAGACAGCTCTGATTAGTCGTTGTCAGGGAAACCCGAGCCCCAATCAAAAAGTATCAATAGAAAGCTGCTTTTGAAACTAACtcaggtttttctttttcaaacagCAGAAATGAATGTCGCCGCTCACTTTTGTACAttattcagaaatgtaaaacCAGATTAACCTAATATAGAAtgttatacttaaaaaaaaaaaaaaaaaaatcatatccatctttatttttgacagGCATTTTAGTAATATGTCTGTAACACAGCTTTGCGCTCCGCAAATTTGGGATGAACCGGGTATTTCAGATGGATAATCGTGAAATAAAGGGCAGATCTCACAAAAACATGGCAGactcattaatttaaaaattgactaaagtttttattttttttttcaaaattgcttGGCGTCTATATAAATCTTCTActaattttaaagttaaaatatagtGCATAATTGTGTCTTGACGGGTTTTGTGAGGTCTGCCCTGCGTGAAGCAAGTTTGAAAGGCTTTTGTTTTCTGCCTTAGGTAGCAAAGTGTCTTAGATTTGTACCGAAACAATCAAAACCCATCATGTTTACATATTGCAATAAGCCTGGATGTTGGTGATGCTGGTGAAATTATTCACCTGTACACTGGAGAAATCATACTGACTTccgttttcatttttctgaTGCTGTCTGAGACTTCTGATTGTGGTTTACACAGGCcaatgaatgttaaaatgctGTGTTGATGCATATCATACATTACCTCAGCCTCTCTATGTCATCAGTGGAAATATTGTGACTGCACTGTCATTAGCTAGTTGCTGTAAGAAAGGCACGGTGGCTTTCTTGGATTATTTAACGCTGTGTGTTTTGCAAGGCTCGCTCTCATTTAAAGATCTGGTCAATTCTAGGCAAAGTCCAGAAGGAATCCAACTCGTATTTGAGCCAAGACAATAGCACATGTTTTTACgataatctattttttttgtcttttccttgTGCAACATCATATGAGACACTAATGAGGTATCAGGTTTGTTGTTCTAAATGTATTCCAAGAGGAGATCCTGACTAAATTGATCTCGCTTTAttgtaaataacttttaaaccgctgttatttatttgtagccACACAAACTGACCTCAAACTCTGTGATGTTGCGATGGACTCAGTTTGCTCTCAGTCACAACAAGAGCTAGATCCTTTCGGTGATTAGTTAAAGATTGACAGCTGGTGACCAGAATTCACAAGGTTTATACTATGCTGAGAATTATTTTGAtgcactattttatttttaattttttttttttcataatttatggCCTGTTAATGgcctaaaagtttttttacaatttattcccATGACTGCATGAAGTTCAGGTTTGTTCTCGTTTTGAGGGAGAGCAACTGAGCTGTCAGGCTTCACTGTGTTTGAGGAAAGCATCTGGTCTTTGCCAAACGAAAGCACAATGAATCCTGCGTTTAGCCTGTTTGTATATCTGACCCAATCCTCAAACTTTCAGAAACTCAGTGGATAAAAAAAtacctagtttttttttttatatatattttttttttttgcagcaaagcACAACCGGTTTGGTTTCAAGCACAGGTTGAATGTTAGAGTGGTTGGTTAGTAACTTCTAAACTAACGGCACATCACCGCTCCACAAGAgttattttttgctgtttagAGGCTAATTTGTCCCTCAGAATAACGTGAAAAGGTTTTAGTATGTTATTGCATGGAAGTAGGTGTTAGAATAGTAGGCTATAGTGTTGGGTGGATGGGTCTCGCCTTAAACAACCTGTTGAAAACTTGAAGTTTCAGGATGTGAAGGTTTCTTTTCCATTGATAAGATTGTATTCTATCTTAGTTCATACCATTATTGTATATTCCATTatcctttttaatattttgtggtattggttctttttttaatctttatttaaagtaaaaacaagaTGCGTAACTTGTTTTGAATCTATACAAATCTACCTCAGGGTGtgttgaaatgtattaaatggaCATTGTTACCAGAGTGCTGtccatttaaatgtgtgtgtgagagagaaataagtgagtgtgtgctttagtttatttttctaggtttattaatgtatttaatacggTATGTGTGATCGTTTGCAATGTATCTGCACTGTTTAAACTCAGCTTTGgtcaaatgtgtgtaaaattgtGGTTTAAATTTAGACCAGCTCTCAGGAGAAGTGCAAATGTTATATTGCTCCAGTAcgtgttttaattattgttttttttttttaactgtaatgtTCTCTGAGATTAACTCGGGAGTATGGTCATAATTTCTTGTTTGGTTTTGATTAATGAAGAGGATAATCAATGTTGGTgactttaattttgtaatttagaattattctctttttttttttttgttgctctcTGATGCTCGGGGCTCCAGACGCTGCACAAATATGGAGCCCTGCTTATGTTCAGTTAGTGTCTTTCAGTCATTTTGTATTGTCGTTCAGGTGTGGTCAGGACTGTTTGTTCCACTTGTGTTTGATTGAGGCAAATACGTTTAGTGTTCCCGTGACCAAAGAATGTAGCCACATTGAATTAGGCAAACAGATAGCGTGCAGTTTATGAAGTTTCTTCTGCTGTGATCCATGTTGAGTGGTTTCAGAGAAAACGCTTTGAGGATCAGTTCATCTTGACAAAGCATGCAAAGAATGATGTgcccaaaatgtgttttagtgttaACATTGACAACTGCTT

Function

symbol description
lin28a Enables RNA binding activity and polysome binding activity. Involved in RNA metabolic process; positive regulation of cytoplasmic translation; and stem cell population maintenance. Located in cytoplasmic ribonucleoprotein granule; cytosol; and nucleolus. Part of polysome.

NR:

description
PREDICTED: protein lin-28 homolog A

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0019827 stem cell population maintenance biological_process
GO:0031054 pre-miRNA processing biological_process
GO:0031099 regeneration biological_process
GO:0031123 RNA 3'-end processing biological_process
GO:0010587 miRNA catabolic process biological_process
GO:0000932 P-body cellular_component
GO:0005634 nucleus cellular_component
GO:0010494 cytoplasmic stress granule cellular_component
GO:0003677 DNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K18754 LIN28; protein lin-28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217319.1 True 3679 mRNA 0.40 4 2102744 2115503

Neighbor

gene id symbol gene type direction distance location
sf3a3 sf3a3 coding upstream 70559 2026415 ~ 2032185 (+)
nkiras1 nkiras1,LOC107655880 coding upstream 111835 1987321 ~ 1990909 (+)
top2b LOC107717721,LOC107700653,LOC107719851,LOC107655887,LOC107563214 coding upstream 403855 1674741 ~ 1698889 (+)
ints8 ints8,LOC107717725,LOC107719852,LOC107565239 coding upstream 457323 1626768 ~ 1645421 (+)
LOC122323560 NA coding upstream 482284 1612813 ~ 1620460 (+)
pdik1l pdik1l,LOC107690927,LOC107732927 coding downstream 4465 2119968 ~ 2130526 (+)
foxo6b si:ch211-206a7.2,LOC107689548,LOC107732925,LOC107708715,LOC107690913,LOC107595898 coding downstream 38332 2153835 ~ 2181727 (+)
ctps1a ctps1a,ctps1,LOC107708718,LOC107689550,LOC108415321 coding downstream 195767 2311270 ~ 2318033 (+)
rab42a rab42a,LOC108414691,LOC103028730,LOC107732921,LOC107689573,LOC107708721,LOC107595911,LOC107556890,LOC107675932 coding downstream 206898 2322401 ~ 2327881 (+)
LOC122324256 NA coding downstream 214638 2330141 ~ 2330276 (+)
G129886 NA non-coding upstream 20124 2082278 ~ 2082620 (+)
G129881 NA non-coding upstream 45862 2056405 ~ 2056882 (+)
G129795 NA non-coding upstream 398212 1700588 ~ 1704532 (+)
G129743 NA non-coding upstream 569739 1532566 ~ 1533005 (+)
G129701 NA non-coding upstream 835734 1266709 ~ 1267010 (+)
G129916 NA non-coding downstream 149714 2265217 ~ 2265435 (+)
G129936 NA non-coding downstream 227532 2343035 ~ 2343239 (+)
G129942 NA non-coding downstream 235795 2351298 ~ 2351565 (+)
G129947 NA non-coding downstream 263580 2379083 ~ 2379355 (+)
G129974 NA non-coding downstream 612962 2728465 ~ 2734183 (+)
LOC122323678 NA other upstream 129360 1966740 ~ 1973384 (+)
thrb thrb,LOC107743925,LOC107719848,LOC107700654,LOC106588669 other upstream 137054 1870158 ~ 1965690 (+)
LOC122323556 LOC107717722,LOC107700644,LOC107565248 other upstream 429960 1657258 ~ 1672784 (+)
G129682 LOC107664710 other upstream 996171 1072151 ~ 1106573 (+)
ppp1r8a ppp1r8a,LOC107690919,LOC107732917,LOC107708698,LOC108441741,LOC108272406,LOC105903676 other downstream 19149 2134652 ~ 2141332 (+)
G129993 NA other downstream 670422 2785925 ~ 2786348 (+)
LOC122323290 NA other downstream 769910 2885413 ~ 2887628 (+)
serinc2 serinc2,LOC107732928,LOC107689546,LOC107687316,LOC107708726,LOC108272915,LOC103358775 other downstream 774120 2889623 ~ 2893601 (+)
phactr4a phactr4a,LOC107550657,LOC107687470,LOC107595895,LOC107689543 other downstream 844090 2959593 ~ 2978416 (+)

Expression


Co-expression Network