LOC122323473 (LOC107672812,LOC107598225)


Basic Information

Item Value
gene id LOC122323473
gene name LOC107672812,LOC107598225
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5501265 ~ 5504405 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217326.1
cttatcagtgtcttcaggatcattagaaaatcacaggtgggtgagttttatcagggttggagctaaactctgcaatGCATTGGACCCCCGGGGTAAGATTTGAGGAAGCGTGGTCTACAAAGTACTCTGTGTCACGCAGATGGCCATGCAGACGGCTCTACAGGCAAAAAACACGATGTGAGACTCTGAAAAGTACTTAACTGCCTCGAACAGAAATGTTTGAcactacattaaaaatgtaaatttgcagTTCCTCAGGTTAGGTCATTAGAACACATCACCAGTGCAGAgggcattaaataaatgtatacagtgTGCAAACAAATTACAATAAGGTGGTAGTTTTACAGAATGGAGATATGTAAGTGACAGATTAACGCACATGAAGGACAGAGAGACGTAAGGGAAAAATGAAGAGACTAAGGAAAATGGAACACACCTTTTCTGggtttttggtcattttcaaACTCAAATTCTCAACCCCGATTCCTGCACTTGCTTATTTCTGCTGCAGCAAGGTAATGGGTGTCACCACAACGGGAGTTTTGAGACCAAGTTACCTAATTGGCTGACGTCGTAGTGAGGGTAGGTTTAGAGGAGGGGTTAGGTCAAGGGGATCAATTTGATTGCATGATTGAGAAACACCCATTTTTGCTCTGCAGAGACCTCAATCTCGACCATTCCGCGCAGGCACTTCAAAACAAGCACACAGTCTGTTGCATAACTAAACATTCAAATAAGTGACGTAGCGGAGTTAAGagtgtttctgtttctctctgtctgaaAAACATTGCCTAATCAAGGTTTGTCACACTGGACTGAAACATGGTGGATACTCAGGAGAGATTCACTTTAtcttatttattgaaataccTGTTTACTTTATTGGGACTGTTATTGTTCCTGTTGGATATAGCACTGGACATTTGGACTGTTGTGTCTTTTTATCAGGACGGGGCATATGTGTACATGGCAGTGATGATCTTTCTGCTGCTGGGTTCTTCAGTGTTGTTACAGGTCTTCAGCTGGCTCTGGTACTCTGATTCTCTGGATAAAATTAAGACTAAAGTGGAGAAATTTGCAAACCAGCATTTACTGATCAACCCATTACACTTCCTGCAGCTCGGAGTCTACCTCAGGTATGCTGGGGTGATAGAGACTTCTACGAGGGATTTTTGTCATCGCACAAATAGTTTCAGAGAGGATATGTACCTGTACCAAGACCTGCAGATGCTTTGTCTCTTTGAGACATTTTTTGAAAGCGCCCCACAACTCGTACTCATGACGTCTATAATCTTACAGAGAGGAGAGCTGGAGCTTATTACAGgttttaaaatcCTCACATCAGCTGCTGCGATTGCCAAAAGTGTTGCTATGTATCACCGCTGCATGCGTGTCTATCTTCCCGAGAAATGCAAGATGAGTTGGATCTCCACTGCCGTCTACTTCCTGTGGAACTTGTTGGTGATTATTCCCCGTGTATCTGCTCTGGCGCTCTTCTGCAGTGTGTTGCCATGCTACATCACAGCTCACTTCCTGTCTTGGTGGATGCTGCTGGTTTTAGCGGCCTGGAGCcagaaaacaaattacatgAAAAGTCCTGGTTGGGAATGGCTCTTCAGAGCTGCTGTTGGACTCATCTGGTACTTCTGCTGGTTTAACGTGtccaaaaaaagcatcaaagtAAAGATGGCTGTCTATTATAGTTTGATGGCTTTGGACACAGTGATGCTGCTGGGCTTCTGGTGCTGGAAGGTGTTTGAGTATGCAGGATGCTCCTTGAATCCTTACGTGGTGATACCGACACTACTAGGTTTATATGTCAGTGGAATACTAGTGAAAATTATATACTACAAATGGTTTCATCCCAAtggtaatgaaaaaaaaatcactgaaccCACTGAAGAAGAGAACCTCAGAAGAGCTAAAACATATGAAATGGACTCGGACTGCACCCCAGAAGACATAGACATTTCTGAGCAGCCTTTCACTGGAGTCCACCAGAGGAGCAGGACAATGGCTGCTAATTTCTACTTCTAGCTCTTGGTTGAACTTTTAAagtttttcatataaaaaactGATTGAATGAGATTTAAATTGACGATTGTAAAAGATGTTGGGACTGGATTAGTACATGCCAGGAACAGCTGATGCGAGCTTGACTGATCGGGTCTGACTGAAATAACGCAATGCTAGATTTaagttaaaggggtcatatgacgcgatttcaagtttttctttctctttggagtgttacaagctgttagtgcatagataaggtCCATAAAGTTGCTAAGACTAA

Function

NR:

description
PREDICTED: XK-related protein 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217326.1 True 2302 mRNA 0.42 3 5501265 5504405

Neighbor

gene id symbol gene type direction distance location
LOC122324255 NA coding downstream 96365 5404769 ~ 5404900 (-)
si:dkey-154b15.1 NA coding downstream 98134 5398274 ~ 5403131 (-)
myo1g si:dkeyp-92c9.3,LOC107672858,LOC107702514,LOC107731552,LOC107738593,LOC107571466,LOC107598227 coding downstream 103702 5360053 ~ 5397563 (-)
txnipa txnipa,txnip,LOC107672857,LOC107702541,LOC107738596,LOC107731569,LOC108410889 coding downstream 187100 5310748 ~ 5314165 (-)
si:dkeyp-92c9.4 LOC107756116,LOC107672827,LOC107598229 coding downstream 214104 5281443 ~ 5287161 (-)
LOC122323472 LOC107598215 coding upstream 1647 5506052 ~ 5510656 (-)
LOC122323471 LOC107738589,LOC107571461,LOC107672867,LOC107598215,LOC107731566,LOC107702687 coding upstream 10622 5515027 ~ 5519834 (-)
xkr8.3 LOC107598214,LOC107731550,LOC107702601,LOC107738589,LOC107672867 coding upstream 18675 5523080 ~ 5527170 (-)
ptp4a3a ptp4a3,LOC107702466,LOC107571462,LOC107598212,LOC107731571,LOC107738588,LOC108272580,LOC103031245 coding upstream 82132 5586537 ~ 5609859 (-)
rims3 rims3,LOC107672861,LOC107598211,LOC107702460,LOC107571463,LOC107731575 coding upstream 109863 5614268 ~ 5670371 (-)
G130804 NA non-coding downstream 60400 5440426 ~ 5440865 (-)
G130801 NA non-coding downstream 67336 5433562 ~ 5433929 (-)
G130764 NA non-coding downstream 148003 5345595 ~ 5353262 (-)
G130768 NA non-coding downstream 226344 5271840 ~ 5274921 (-)
LOC122323253 NA non-coding downstream 261184 5237309 ~ 5240081 (-)
G130827 NA non-coding upstream 16534 5520939 ~ 5522966 (-)
G130880 NA non-coding upstream 170149 5674554 ~ 5674878 (-)
G130914 NA non-coding upstream 241443 5745848 ~ 5876713 (-)
G130920 NA non-coding upstream 248180 5752585 ~ 5883367 (-)
LOC122324223 NA non-coding upstream 334388 5838793 ~ 5847759 (-)
LOC122324254 NA other downstream 95629 5404516 ~ 5405636 (-)
G130744 sema4ab,LOC107702572,LOC107672813,LOC107598230,LOC107731578,LOC107705066 other downstream 241101 5141505 ~ 5260164 (-)
G130763 NA other downstream 249076 5245353 ~ 5252189 (-)
LOC122323502 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other downstream 278382 5087244 ~ 5222883 (-)
G130696 NA other downstream 559433 4743572 ~ 4941832 (-)
G131006 LOC107754818,LOC107731580 other upstream 857942 6362347 ~ 6363172 (-)
sh3bp5lb sh3bp5lb,LOC107711328,LOC107677461,LOC107694325,LOC107754828,LOC107584304,LOC108435520 other upstream 1123193 6627598 ~ 6639220 (-)
polr1h znrd1,LOC107584303,LOC107754832,LOC107677479,LOC107694346,LOC107595594 other upstream 1143985 6648390 ~ 6649389 (-)
srd5a1 srd5a1,LOC107691541,LOC107711310,LOC107595623,LOC107694335 other upstream 1345964 6850369 ~ 6858660 (-)
LOC122323893 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other upstream 1852216 7356621 ~ 7360143 (-)

Expression


Co-expression Network