cthrc1a (cthrc1a,cthrc1,LOC107746934,LOC107668704,LOC107675657,LOC107754923,LOC108438867,LOC108257304)


Basic Information

Item Value
gene id cthrc1a
gene name cthrc1a,cthrc1,LOC107746934,LOC107668704,LOC107675657,LOC107754923,LOC108438867,LOC108257304
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 4211439 ~ 4217713 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217342.1
ACCGTTGTAGAGCTCCTCAGGGCTGCTTTTCATTAGTAATTCAGGTATCAGTCGTCGACACCGAGGGGCACGCCCCGTCTGCCGCGACAAAGAGCGGTCCCGGGGTTTGAATGCGGCTCTGTGGCGGATTGATCGTCTCCGGCCCCCTGCAGGAGACTCCAGACTCTGCTTCAGTGAGGAGACGGTTATTAACGGCAGCAGTTGATCTGAGCGGAGCCGTGCTGAGAGCCGCTGCGGTCGAGCGATGAGGGCCACTAAACTGACACCACTCCTGCTTTGCTTTTGGATAACTTTGCCGTTCTGTATCACGGAGAAGGTCAAAGAAAGGGGCGCCCGGCAAAAAGACGCGGAGTTCACCGACAAGTACCAGACGTGCATGCAGGGCGTACCTGGAGTGCAGGGCAGGGATGGGAACCCGGGGATAAACGGCATTCCAGGGACCCCGGGGATCCCCGGGAGAGACGGACTTAAGGGCGAGAAGGGagagtgtgtgagcgagagGTTTGAGGATCCCTGGAAACCCAACATCAAACAGTGCGCCTGGAACTCTTTAAACTACGGCATTGATCTGGGAAAGATAGCCGAGTGCACGTTCACCAAGCAGCGGTCGGACAGCGCTCTGCGCGTGCTCTTCAGCGGCTCTCTCAGGCTCAAGTGTAAGACGGCCTGCTGCCAGCGCTGGTACTTCACCTTCAACGGGGCTGAATGCACCGGACCGCTGCCCATAGAGTCCATCATTTACCTGGACCAGGGCAGCCCTGAACTCAACTCCACCATCAACATGCACAGGACCTCCACAGtggagGGGCTCTGTGACGGGATCCAGGCCGGGCTGGTGGATGTTGGGATCTGGGTGGGCACATGTGCTGATTATCCTCGAGGAGACGCATCGACCGGCTGGAACTCTGTCTCCCGGGTGATCATCGAGGAGCTTCCCAAATGAGCTTCAGCACGGTCTTCATCACCATGGCAATAGCGCTCCTGTCTCAGAGAGGACCTTCCTCACAGACACGGGACACATTAAAGCTAATAGAGTGGCTCTGAGTCTGTGCAGCTCTCATGTTGTGTCAGATTATTATTCTCATTGTGAAAGCTGAGGATCATAAAAGTACAGTGAATTACAAAATAGAAGCACCGTGTTTGTACTACGGCTTTTTGGACACTACCGTAATCATATTTTTGAGGAAAGAAAAGTAGCTTGTACGATACGAGGATACGAGGTCATCCCTGTATAACGCTACCGCCATTTTAAGGAGAGTCCAACAAAGacgctgtatttatttagtggCTCTTCATTTTGTGCCTTGATGACTAAAACTCATATTTCTGTATcgattgttttgcttttttttattacctatAACGATGAAGAAAAGTCAGGTCCAGTTTCACCTCAcgaataaaaatgtactgtgaaaa

Function

symbol description
cthrc1a Acts upstream of or within cell adhesion; convergent extension involved in axis elongation; and gastrulation. Predicted to be part of collagen trimer. Is expressed in several structures, including axis; margin; musculature system; shield; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Barrett's esophagus. Orthologous to human CTHRC1 (collagen triple helix repeat containing 1).
cthrc1 Predicted to enable Wnt-protein binding activity and frizzled binding activity. Predicted to be an extracellular matrix structural constituent. Predicted to act upstream of or within several processes, including establishment of planar polarity involved in neural tube closure; inner ear development; and ossification involved in bone remodeling. Located in extracellular space. Part of collagen-containing extracellular matrix. Implicated in Barrett's esophagus.

NR:

description
PREDICTED: collagen triple helix repeat-containing protein 1-like

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217342.1 True 1419 mRNA 0.52 4 4211439 4217713

Neighbor

gene id symbol gene type direction distance location
rims2b rims2,LOC107689551,LOC107754909,LOC107569304,LOC107668707,LOC108257276,LOC107559391,LOC107732136,LOC107675654,LOC105892072 coding downstream 12197 4074040 ~ 4199242 (-)
zfpm2b zfpm2b,LOC107714469,LOC107668719,LOC107689530,LOC107754911,LOC107559400,LOC107569300 coding downstream 392583 3769537 ~ 3818856 (-)
srsf4 srsf4,LOC107569308,LOC107559403,LOC107754925,LOC107689552,LOC107668713,LOC108229131 coding downstream 445035 3759857 ~ 3766404 (-)
tmem200b si:ch211-204a13.2,LOC107714467,LOC107668712,LOC107754915,LOC107569305,LOC107689563,LOC107559402 coding downstream 452032 3754224 ~ 3759407 (-)
LOC122323724 LOC107689534,LOC107567588,LOC107754929 coding downstream 645557 3554796 ~ 3565882 (-)
mc5ra mc5ra,LOC107746932,LOC107552309,LOC107675655,LOC107754914,LOC107566557 coding upstream 26980 4244693 ~ 4267138 (-)
rnmt rnmt,LOC107668718,LOC107754922,LOC107566559 coding upstream 67579 4285292 ~ 4296757 (-)
ldlrad4a ldlrad4a,LOC107668709,LOC107675658,LOC107566561,LOC107746928 coding upstream 85702 4303415 ~ 4376360 (-)
seh1l seh1l,LOC107668717,LOC107746927,LOC107748371,LOC107666589 coding upstream 160801 4378514 ~ 4387615 (-)
psmg2 psmg2,LOC107738327,LOC107748372,LOC107672829,LOC107550101 coding upstream 191020 4408733 ~ 4410934 (-)
G130360 NA non-coding downstream 1166 4187442 ~ 4210273 (-)
G130355 NA non-coding downstream 5513 4181499 ~ 4205926 (-)
G130352 NA non-coding downstream 15748 4172551 ~ 4195691 (-)
G130341 NA non-coding downstream 146147 4049813 ~ 4065292 (-)
LOC122323451 NA non-coding downstream 238392 3952618 ~ 3973047 (-)
LOC122323452 NA non-coding upstream 11286 4228999 ~ 4232415 (-)
G130459 NA non-coding upstream 49466 4267179 ~ 4267424 (-)
G130463 NA non-coding upstream 69775 4287488 ~ 4287870 (-)
G130465 NA non-coding upstream 80796 4298509 ~ 4300326 (-)
LOC122323668 NA non-coding upstream 186304 4404017 ~ 4405900 (-)
tmem222b tmem222b,LOC105903612,LOC107550652,LOC107754919,LOC107567586,LOC107700749 other downstream 659614 3537441 ~ 3551825 (-)
kdf1b LOC107700730,LOC107712602,LOC107550653,LOC107754920,LOC107567594,LOC107689538 other downstream 696760 3508834 ~ 3514679 (-)
zdhhc18b zdhhc18b,LOC107700701,LOC107737765,LOC107689541,LOC108413341,LOC107550656,LOC107570996 other downstream 831512 3363481 ~ 3379927 (-)
LOC122323345 fam46bb,LOC107712594,LOC107700817,LOC107737782,LOC108413340,LOC103370123 other downstream 887611 3313389 ~ 3323828 (-)
G130083 LOC103461248,LOC102786159 other downstream 1061650 3149154 ~ 3149789 (-)
polr2k NA other upstream 322266 4539979 ~ 4541629 (-)
G130696 NA other upstream 525859 4743572 ~ 4941832 (-)
LOC122323502 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other upstream 869531 5087244 ~ 5222883 (-)
G130744 sema4ab,LOC107702572,LOC107672813,LOC107598230,LOC107731578,LOC107705066 other upstream 923792 5141505 ~ 5260164 (-)
G130763 NA other upstream 1027640 5245353 ~ 5252189 (-)

Expression


Co-expression Network