LOC122323484 (neu1,LOC107677467,LOC107711305,LOC107694326,LOC107595619,LOC107754787)


Basic Information

Item Value
gene id LOC122323484
gene name neu1,LOC107677467,LOC107711305,LOC107694326,LOC107595619,LOC107754787
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6425467 ~ 6429491 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217344.1
ACAGAGCCTAAACCCTGAAGGACAAGATTTGTTTGTCTTGTGATTTTCACGTTTTCTATAATGGCCGTGATATCAACTGTCACATATAAAGACAGAAGTTTTAGATACACTTTCTCAATTAGACAGGTAATTTTGGTATCTGAAGATTTGTTAATATTTGCCAGTTTCTGGGGGTGTCCGAGGAGGTTAGTCAAGTGCTGTAAAGGCAGAGCGTGTCACTGATGTGCTCTTATCTCATTACTGTAAACCAAACCGGTCTGTTAAACCAGTTCTCTTGTCTTTTCTTCCGCTGGCTGACTCTGTTGAGCACTCGTGTGAATTTAAATAGCCTTCAGGAAAAATCACAGTCGTTCACACGCGTCCGAACAAAACTTCCACCATGAAGCAGGCTCTTTTGTGGATTTTGCTTCTTACGGTGCTTTGTTCATTTGTGCGAAATGAAAAGATCAATCCAGCTATGGTGGATGAGCAGCTGCTCTGGGTCGGTGGTGGAATCGGAGAAGTTCACACCTACAGAATTCCCCTCCTCACCTTCACTACTCAGGGAAGCCTTCTGGCTTTTGCAGAGGCCCGGAAGCTGTCCTTCAAGGACATAGGAGCCAAGTTCATCGCTTTAAGACGCTCCACAGACAGAGGAGCCACCTGGTCTCCCACCTCCTTCATAGTGGACGATGGTTCTCTGGCAGATGGGTTGAATCTGGGTTCGGTGGTTGTGGATGAAGAGACTGGTGCTGTGATAGTCATCTACTCGCTGTGTTTCCACCGTTATCACTGCAAGCCCTCTAAAACCATGATGGTGCAGAGTCTGGATGACGGCTTCACCTGGAGCGCCCCACGAAACCTTAACCCTCAACTGGGGATCATGAGTTTTGTTCCTGGACCAGGCTTCGGTATACAGAAACGTCATCCGCCTGCTGTTGGGCGTCTGGTGGTGTGTGGCCACGGCAGCATCGCCGGAGACGGTGTGTTTTGTATCCTGAGTGATGATCATGGAAACACGTGGAGATACGGAGCTGAACTGAAGAGCATTCCCTACAACCAGCGCAAAAACAACCTGGACTTTGAACCGGATGAGTGTCAGCCAGTGGAGCTGGATGACGGCAGCATCGTGATTAATGTGCGCAACAATAGACACTACCACTGCCGCTGCCGTATGGTGGTGCGCAGTCGGGATGGAGGAGAGTCTCTGCCGGTGGAGGAGCTGGTGTTTGATCACACACTGGAGGATCCTGCGGTCGCAGCTGGAGCTTTAGAGAAGGAAGGAGTGCTGTACTTCACCAACCCAGCCAACACTAACAACAGAGTGAACCTGACCCTTCGCTGGTCTCTGAATCGTGGTAAATCGTGGGTGAAAGATACTCTGAAGATCTGGGCCGGGCCAAGTGGGTACTCATGTATGACGTCACTTAAAGGCAACGGAAGCGTGGATCATAAATACATCTATGTTATCTATGAAAAAGGCCAAAAAGACTATTTTGAGTCCATCTCCTTTGTGAAAATTGACCTGTACAGCGACCCAGAATGGCTACAataaccaaaaaacaaacaaa

Function

symbol description
neu1 Predicted to enable exo-alpha-sialidase activity. Predicted to be involved in ganglioside catabolic process and oligosaccharide catabolic process. Predicted to act upstream of or within lipid catabolic process. Predicted to be active in lysosome and membrane. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human NEU1 (neuraminidase 1).

NR:

description
PREDICTED: sialidase-1-like

GO:

id name namespace
GO:0005764 lysosome cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG:

id description
K01186 NEU1; sialidase-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217344.1 True 1550 mRNA 0.48 7 6425467 6429491

Neighbor

gene id symbol gene type direction distance location
prrc2a LOC107754821,LOC107694359,LOC107584310,LOC107711320,LOC107595587,LOC107677454 coding downstream 10290 6395759 ~ 6415177 (-)
csnk2b csnk2b,LOC102207154,LOC106594067,LOC101175345,LOC100710962,LOC106573472 coding downstream 30461 6390817 ~ 6395006 (-)
dtnbp1b dtnbp1b,LOC107568291,LOC107754801,LOC107731565,LOC107694327,LOC107598220 coding downstream 232777 6163823 ~ 6192690 (-)
pard6gb pard6gb,LOC107672872,LOC107754812,LOC107702404,LOC107731577 coding downstream 454896 5939450 ~ 5970571 (-)
bloc1s4 bloc1s4,LOC107672822,LOC107568287,LOC107702415,LOC107731556,LOC107598233 coding downstream 486883 5933632 ~ 5938584 (-)
LOC122323486 neu1,LOC107694358,LOC107754788,LOC107711321,LOC107677466 coding upstream 144 6429635 ~ 6433398 (-)
prrt1 prrt1,LOC107694357,LOC107677474,LOC107584308,LOC107711307,LOC107595589,LOC107754825 coding upstream 17857 6447348 ~ 6455622 (-)
skiv2l skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354 coding upstream 26601 6456092 ~ 6473551 (-)
LOC122323305 LOC107754826,LOC107584364,LOC107694352,LOC107595620 coding upstream 49025 6478516 ~ 6484099 (-)
LOC122323303 LOC107584307,LOC107694350,LOC107711327,LOC107595591 coding upstream 56426 6485917 ~ 6494196 (-)
G130999 NA non-coding downstream 69992 6354956 ~ 6355475 (-)
G130982 NA non-coding downstream 132201 6248351 ~ 6293266 (-)
G130978 NA non-coding downstream 189190 6234044 ~ 6236277 (-)
G130973 NA non-coding downstream 227106 6198125 ~ 6198361 (-)
G130969 jarid2,LOC107568290,LOC107702394,LOC107754814,LOC107694367,LOC107731546 non-coding downstream 269903 6153039 ~ 6155564 (-)
G131114 NA non-coding upstream 8714 6438205 ~ 6440082 (-)
G131153 NA non-coding upstream 264401 6693892 ~ 6704443 (-)
LOC122323439 NA non-coding upstream 272992 6702483 ~ 6708065 (-)
LOC122324260 NA non-coding upstream 273832 6703323 ~ 6703389 (-)
LOC122324261 NA non-coding upstream 274380 6703871 ~ 6703937 (-)
G131006 LOC107754818,LOC107731580 other downstream 62295 6362347 ~ 6363172 (-)
LOC122324254 NA other downstream 1019831 5404516 ~ 5405636 (-)
G130744 sema4ab,LOC107702572,LOC107672813,LOC107598230,LOC107731578,LOC107705066 other downstream 1165303 5141505 ~ 5260164 (-)
G130763 NA other downstream 1173278 5245353 ~ 5252189 (-)
LOC122323502 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other downstream 1202584 5087244 ~ 5222883 (-)
sh3bp5lb sh3bp5lb,LOC107711328,LOC107677461,LOC107694325,LOC107754828,LOC107584304,LOC108435520 other upstream 198107 6627598 ~ 6639220 (-)
polr1h znrd1,LOC107584303,LOC107754832,LOC107677479,LOC107694346,LOC107595594 other upstream 218899 6648390 ~ 6649389 (-)
srd5a1 srd5a1,LOC107691541,LOC107711310,LOC107595623,LOC107694335 other upstream 420878 6850369 ~ 6858660 (-)
LOC122323893 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other upstream 927130 7356621 ~ 7360143 (-)
LOC122324169 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 other upstream 965689 7395180 ~ 7397946 (-)

Expression


Co-expression Network