LOC122323486 (neu1,LOC107694358,LOC107754788,LOC107711321,LOC107677466)


Basic Information

Item Value
gene id LOC122323486
gene name neu1,LOC107694358,LOC107754788,LOC107711321,LOC107677466
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6429635 ~ 6433398 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217345.1
GACTCTGACGTCACGCGGCGGCGGTCACATGACGCTGAGGATGTGAGGCTGAGGCGTGTGTTATCATGTAGATACTTCATGATTCACAGGTCTTATCGAGACGTATTAATACCTTAATCAAAAGGCGTTCGCCTCTTGTTTGCTCTCTGAAGTCGTATCTGCGCCGCGGTGGCGGTCTTTTGTTAAATCGATGGATTTTATTCGACAGTGTGGAGTCGTTCTTCTGATCGCCGGGCTCTCCGGCGCGAATACACAGATCGAGCCGCTGATATACGAGGAGCAGCTGCTCTGGGTCGGCGGTGGAGCCGGTCAGGTCAACACTTACAGGATCCCCCTTCTCACCTTCACCACGCGTGGAAGTCTGCTGGCCTTCTCGGAGGCTCGAACGTCTTCTGCAGACATCGGCGCAAAGTTTATCGCAATGAGGCGCTCCACAGACAAAGGAGCCACCTGGTCTCCCACGTCGTTCATAGTGAACGACGGTACTCTGGCAGATGGGTTGAATCTGGGTTCGGTGGTTGTGGATGAAGAGACTGGTGCTGTGATACTCGTCTACTCGCTGTGTTTCCACCTTTATCACTGCGGCCCGTCCAGCACCATGATGGTGCAGAGTCTGGATGACGGCTTCACCTGGAGCGCCCCTCGAAACCTCTCTGTTGAGCTGGGGGTGAAGAGCTTTGCTCCGGGGCCGGGCTTCGGCATACAGAAGCGCTATGCTCCCAATGTGGGCCGTCTGGTGGTGTGCGGCCACGGATCCATTGCTGGTGATGGGGTCTTCTGTATCCTGAGTGATGATCACGGGAAGTCCTGGAGATATGGAGCTGCCCTGAAGAGCATCCCTTACAACCAGCCCAAACAAAATCTGGACTTCAACCCAGACGAGTGTCAGCCAGTGGAGCTCGAGGACGGAAGCATAGTCATCAACGTGCGCAACCAGAACAACTACCACTGCCGCTGTCGAATAATCGTGCGCAGTTTGGACGGAGGCGAGACTCTTCCCGTGGAGGAGCTGGTGTTTGACAAAACCCTGATCGACCCCGCCGTCGcagccggagccctgcagaagCAAGGAGTGATGTACTTCACCAACCCCTCCAGCGCTCAGCACCGGGTCAATCTGACTCTTCGCTGGTCCTTCACGGATGGGAAGTCGTGGGAAAAGCAGGCGGTCCAGATCTGGGCGGGGCCGAGCGGTTATTCGTCTATGACCTCACTCAAGGGGGATTCTCCTGAGGacagcaaatacatttatgtcattTACGAAAAGGGTTATAAAGATTACTGCGAGACTATCTCTTTTGTCAAAATCCATCTATACGGAGGGAAGTAACGTACGGGTAGAGGAGCCAAAAAAGGGATATTTaggaattttttaaatgaacttgaaAAAATGAAAGCCAAGGTATCATCGATgcaaagtaatttttaaaattctttacaTTAAATCTACAGTATGAACTGTTTTATATGAATGTCTCACCAGAAAGAATCGAGCCTGAGATTGATCTATACAGCAATATGATACAAAAACGACTGTGATTGCACCCACTGATTCTTGGCATTGTGCAGCCGGTGAGCACGTGTTTTTGGGACTGTTTGATGGTTTTCGAACATCTCAGCTGCCGTTTGTCTTGCTGatccttttatttcttttattgttttgttgtttacaaTAAGTGAAGTGAATCTTCATGAAGCCACAGCTTTCTTGCTGTGGTGGTCTGCTACTGTGTAACAGTCATTGATTTGTATTGACTGCAGCTGTAATGTCACAACTGAAGTCTTGAATTAGTGTTTCGAATACAGAAATGTTCAATTTGAATTATTGTGAGGTGTTTCTCCAATCCCAGGTGTTGCTTAAATTAACGAAGGCCTCTGAAATGACTGGCATACACATGATTTGAGACACATAGACGGTCTAAGCAATCAGTGTttgttataaaattatacaacagTGAAGTGAAAAAGTTAACTTCAggttatattgttttatttacccAGTGTGGCTTTTTTGTGGccataaatgtacatttaggTAACATCTCACTgtaagtgatttttaaatagtacatGCAGGTTTGtggtaattaaattaaaacctaATTAAATTTCATGCTAACACATATGACTTTTCACTTGATTTTTCGGATTACACAGGGACACATTTTATTgttcaataaatgtttatattttca

Function

symbol description
neu1 Predicted to enable exo-alpha-sialidase activity. Predicted to be involved in ganglioside catabolic process and oligosaccharide catabolic process. Predicted to act upstream of or within lipid catabolic process. Predicted to be active in lysosome and membrane. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human NEU1 (neuraminidase 1).

NR:

description
PREDICTED: sialidase-1-like

GO:

id name namespace
GO:0005764 lysosome cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG:

id description
K01186 NEU1; sialidase-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217345.1 True 2195 mRNA 0.47 7 6429635 6433398

Neighbor

gene id symbol gene type direction distance location
LOC122323484 neu1,LOC107677467,LOC107711305,LOC107694326,LOC107595619,LOC107754787 coding downstream 144 6425467 ~ 6429491 (-)
prrc2a LOC107754821,LOC107694359,LOC107584310,LOC107711320,LOC107595587,LOC107677454 coding downstream 14458 6395759 ~ 6415177 (-)
csnk2b csnk2b,LOC102207154,LOC106594067,LOC101175345,LOC100710962,LOC106573472 coding downstream 34629 6390817 ~ 6395006 (-)
dtnbp1b dtnbp1b,LOC107568291,LOC107754801,LOC107731565,LOC107694327,LOC107598220 coding downstream 236945 6163823 ~ 6192690 (-)
pard6gb pard6gb,LOC107672872,LOC107754812,LOC107702404,LOC107731577 coding downstream 459064 5939450 ~ 5970571 (-)
prrt1 prrt1,LOC107694357,LOC107677474,LOC107584308,LOC107711307,LOC107595589,LOC107754825 coding upstream 13950 6447348 ~ 6455622 (-)
skiv2l skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354 coding upstream 22694 6456092 ~ 6473551 (-)
LOC122323305 LOC107754826,LOC107584364,LOC107694352,LOC107595620 coding upstream 45118 6478516 ~ 6484099 (-)
LOC122323303 LOC107584307,LOC107694350,LOC107711327,LOC107595591 coding upstream 52519 6485917 ~ 6494196 (-)
sacm1la sacm1la,sacm1l,LOC107694349,LOC107677458,LOC107584306,LOC107711326,LOC107754789,LOC108273174 coding upstream 61093 6494491 ~ 6508430 (-)
G130999 NA non-coding downstream 74160 6354956 ~ 6355475 (-)
G130982 NA non-coding downstream 136369 6248351 ~ 6293266 (-)
G130978 NA non-coding downstream 193358 6234044 ~ 6236277 (-)
G130973 NA non-coding downstream 231274 6198125 ~ 6198361 (-)
G130969 jarid2,LOC107568290,LOC107702394,LOC107754814,LOC107694367,LOC107731546 non-coding downstream 274071 6153039 ~ 6155564 (-)
G131114 NA non-coding upstream 4807 6438205 ~ 6440082 (-)
G131153 NA non-coding upstream 260494 6693892 ~ 6704443 (-)
LOC122323439 NA non-coding upstream 269085 6702483 ~ 6708065 (-)
LOC122324260 NA non-coding upstream 269925 6703323 ~ 6703389 (-)
LOC122324261 NA non-coding upstream 270473 6703871 ~ 6703937 (-)
G131006 LOC107754818,LOC107731580 other downstream 66463 6362347 ~ 6363172 (-)
LOC122324254 NA other downstream 1023999 5404516 ~ 5405636 (-)
G130744 sema4ab,LOC107702572,LOC107672813,LOC107598230,LOC107731578,LOC107705066 other downstream 1169471 5141505 ~ 5260164 (-)
G130763 NA other downstream 1177446 5245353 ~ 5252189 (-)
LOC122323502 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other downstream 1206752 5087244 ~ 5222883 (-)
sh3bp5lb sh3bp5lb,LOC107711328,LOC107677461,LOC107694325,LOC107754828,LOC107584304,LOC108435520 other upstream 194200 6627598 ~ 6639220 (-)
polr1h znrd1,LOC107584303,LOC107754832,LOC107677479,LOC107694346,LOC107595594 other upstream 214992 6648390 ~ 6649389 (-)
srd5a1 srd5a1,LOC107691541,LOC107711310,LOC107595623,LOC107694335 other upstream 416971 6850369 ~ 6858660 (-)
LOC122323893 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other upstream 923223 7356621 ~ 7360143 (-)
LOC122324169 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 other upstream 961782 7395180 ~ 7397946 (-)

Expression


Co-expression Network