prrt1 (prrt1,LOC107694357,LOC107677474,LOC107584308,LOC107711307,LOC107595589,LOC107754825)


Basic Information

Item Value
gene id prrt1
gene name prrt1,LOC107694357,LOC107677474,LOC107584308,LOC107711307,LOC107595589,LOC107754825
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6447348 ~ 6455622 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217351.1
CGTTGACATTTGGTGTCGCGTGCTTCGTGGACGCTGTAGCGTGGTTCTGCGGTCTCTTTAAGACGCTCTGGTTAATTCAGTGTAACTAGACGCGTTAGTTGAAACCtgtttttctgctgctgctgatgctcTGGATGTTGCAGTGTGACCGTGGAAAAAAAGCGGCGACAGACATCCAGTCGCTTTCGCACCCAGATAACCCAGGCTTTCCACGGGGATTACCGTCTGAAGATGCATCGTTATTAGCCCGGAGAAACCATCAGCATCGTCTGCTGCGATCTGACACAAAGACGGACGTAACTTACTGCTTGGATTTTATCGCTGAAAGGGCAGCCTGAACATCGTCGAGACGGATAAATAAACGCGATGTCGTCGGAAAAACAcgGATTGGAGGAGGCCGCGGGGAGGCAGTCCATGTCTCAGCCGATGATGCagatggctcctcctccttacCTCCCCGCCCAGGACCCCAACATGCCCCCTCATCCCCCGCCGCCCGGCTGTGCCCCGCAGCCCAATTACCCCCCCCCCTCCCCTCCCGGATCCGAGGGGTATCTGCAGGAAACCCAGTTCCACTGCGGCACCCTCGGCCCCCAGGGAGCTTCGAACGGATACCCGGTTCAGACCCACGGACCTGTGGGCACCGTCCCTCATCCCCCGGTGGGCTACTTACACACAGGATACCCCCTCCAGCTGCAGCCCTGCACAGCCTACGTGCCCGTCTACCCTATAGGCACAGGGGCGCAGCCTTACATGCCCAACGGTGCGCCTCATCCAGGTGTTGCCCCGGGCCAGATGGCCATGCATATGCCAAATGGCATTGCTCTGATGGAGTCTCGTCGTCCTCCTCACGACTACCTGCCCATCGCCGTCCTCACCACTGTCTGCTGCTTCTGGCCCACAGGAATAATCGCCATCATCAAAGCAGTGCAGGTGCGTACCGCTGTGGCTCGAGGAGATATGGTTACAGCAGAGATCGCCTCTCGTGAGGCGCGTAACTTCTCCTTCATCAGTCTTGCGGTGGGAATCGCCTCCATCGTGCTCTGCACCATCCTCACCGTTGTGGTCATCATCGCCTCTCAGCACCACGATGACGACTGGGAGCCCTAGAGAGCCCTAGAGGGCCCAGCTCGGGACGCACCGCCCATCCCGACCCCATCATTCCAGTCGGTATTCTGCTTTTTCTGTCACACAGCACAGTTCTGACGCTCAAGCCACCACATCCTAATCTCCAGTCCAAAATACACTTTTACAGCCATTTGATCATGTATTAGTTAGAAGATAGTTTGACGGTACGGTAAATCGGAGCGTGGGGAACACAGCGCGTCTGCGGTGTCGTAAGCGGTGTACGCTCACACTCACGTGAACCTACCTGAACACTTCCTGTTTCTCCTAAACAAAAGCCTGTGCTAGATCAGTAGTTAGAAATATAGTGTACTAAAGGCTTGAGTCAGGTCAGGTGTGTTATCATTTGCTCTTTAAATCTGccaaaaatgttgctttttttaaaagaaacacactAAGTATTACAGGAACATGATTTTGGTGTTTTTTGACGTTCGAAACATTCCACCTATTATTTGTGCCATTTATCTGTTTAGAAAGACGGTATGTTTCTTTGCAGGATAAACTGACAAATTTACTAACTCCACTAAGTGTGGATAAATCGTGTTTTCTATACGCTAAGTATCGAAAAGTGTAACATAATGTATTGAATAAGTCGAACGCCTAATAGATTGAAATAGGTCGATATTGTATAACTGGATTTTCACCCAAAGCAACTTCTGTTGAGTGTGTATCAGTATTGATTACTCGGTGCTTTCTTTTCTGAGGCCAGAAGTCTACGCTACGCagtacacaaacacagatgcaaTTGTTTGGCTAATGgctacatgttaaaaaaaaatggcaaaaatgaagCCTTGGTGAATCAGTTTGGTTGTTTGAACTTAGTGTGTTGTTCAAGCTGTTGAGTTCATACAGCAGATGAAAAGCCAGGCGTAATAAAGGTGTTCAGCAACGAGCTGAAGAGCTTTTAGCTGAACAAATGATGCCCATTTTTGGCTtacctgtctgtctgctgtgtctcatacacaaaatgcacacTAAAACAGTCAGCAGTCTTTTGAACATTTAGtttaattgcatgttaaatTTTTGCACTACTTGTTGCACAATTGACCGGCAAtcgagtttgattgacaggcgaaCAGACCAATCATAAAGAAGCATCTGCTATTTTGTCCAACAAACAAATCGGACGGTAGATTAACACTTTTAGACTTTAACCTGAAAAATTAATCTATCACGACACATTAAACGGTCACGAAACCATATTTGTctttaacatttcttaaaaatgactGGTTTTGAAAACCGAGacttatttttttccaccacTGTTAACCCGCGAAAACACATTCTGTGTGAACGGACATTTATTGCGGTAGTTAACCGATGTCAGTTTAACCAACTTTAACCAGCTCAGTAGGACCCTCAACGAACTACACAGTAACCCGACCCCAGAAGAAGACAATTATACCAATGCATAGCAGAACTGCGATGTGTATTTGCGCTGCAGTTATGAATTCCTGACAAGTTACCGATGCAGCAATATGCGAAACCGGCTAAAAGCATTTGTGTTCACGTACTTGCGTAGCGTGTGTCTTGGGTCTAAGTGTTCCCGAGTGTCTTGTTTGCAAACCGGTCTCAAATCGATCCAGTCCTGAGGTGTTGGAAGAATGTATTCTAGGGTGAAATTATTACTCCGTTACTGACTATTGTGAATTGGCTCGAAGGAACACATCAATTTTGTGTGTCGTGAActagtgtattatttattgtttaaacactaaattattcatttgtgtattaaattgatacttctatatttattattaaatatgtaaacataggTCTAACTGTTGTGCTGAAATATTTGGTTATCTTTCCTAGATAACGGTCAATCATCGCAGATGATTGCTCAGCTGGCATATTTTGATGACGCATGTGATAATATGCACTTTTATGCTCAGTAAGCAAGTAGCTAGTTTGTCTCACTTCTTTGTAGATGAGAGCGTAACTTGCTTCAAGTTCTGACCTCATTGAAACTTCTCACATGCTGCTGTCAGTTAGCCGTAGTTTGTTAGGTAAACGCATTTAGCACAACGGTTTGGTCGAATGAAAAGAATCAAACAATCCTAGtgttcctatatatatatattgtgctgAAACATGGATGcaatgttttagattttttttatttaggactCCAGTATGTGAATTAATCtcttaatgcttaaaaaaagagtttgccCCAAAAATGAAGagtctgtcatttactcaccctcttactttctttatttctaCGGAGCATAAAAGGAGAAATCGATCAAAGTGTTGATTGTTCCAGAATCTGAGActccaaaaatgattttaaaaaatggtgtcaaatatattatttggcTTTACAAGATACTCCAACTTTACAAGTAcccccaaaataatttttttatattattattttattttattcgcATAATTTCCTTTCATTGTGAAACACCAGGCTGAATCTGCCGTGTGCTTTGTTCCACGAAAGAAGGAAAGTCACAAAGGTTTTGAAcggcataaataaaaataaaagcaatgtcagatttttcatttttggatcgATTCAGTggatgatttattttcttttaattgatgTACAAAGCTTTCGATTTCGTCGTGCCGAGAGTAAAACGAGCTTCATTGTTTCAGCGAAATCCTAGAAAGAGAACAGCCAGTTTTGATAATCAAGTGTCCAAATGTGAAAGACGGGAGAAAATCATCTTCTGAATCCTTTTTGAGCGCTTACTTTCTGTCCTCTTCTGCCATGCCACTcagttttaagtatttattttgcttgtgTAATTTGAACGGCATCATATCGTTCTTTTCCTGCTCTCTTTAATCGATTTCTAATATCTTTCTGATCTATTTTTGAACAAAGGACTTGCAGCACATTGCAAGTGTTTCGCCGAACTGTTTGTTGAACGACTTCTGATTTCTACCTGTTAGAGGTGTGATTGCACATGGTCGTGTTTATATGGGCTACGTCGAAAAACATGACCTTCATTTTctaactgagagagagagcatagTTTCAAAAGAAATCCTACCTGTTAATAAGACAAGCTTGTCCGATGactttattttggtgttttaaAGTTGTGCAAACACTGTACAGTTGATGTGAACCTAGCTCCTGTTTATAATTAGCCCAGCAATATGCTTTTTCACACAGTTGTGATATAAAGCGAATGCTTTATTGTTATAAACATGGCCACTGAGATCTGATTGCCTATAGTTACTGCACACGGTTTCTCTAAGCTTGTAAATGCGGTGGGTTTATTCGAAAAGCCGCAAGctcctttgtgtttgtgtgcttttagAGGTTTATTCTGAGGCCAGTCTCGCAAAAACCTGTAAAGAACATATTCCATTTCAAGTCAGCAGAAAGAAATATATAGCTATATTTTCGTAAATAAAATGAGCCTTATCTAATggctattattttataatttctttgcGTAACTTTGATTGCAATGAAACATTGTTCCCATTAAACCCCCCCCCACAATATTTCTTATCGTAATGCAGATCCAATGAGAGTAAAGCATCCTCATGCAGTTTTGACATTGTCTGTTAAACAAAGTCAAGgcttcattttctctgtttaaaaaatacatgaaaactCTTTCACTTGATTTTGAATGTGAATAGCGACATGTTTTCGTGAGATTGGCCCTCTTAATGAGACCAAGCATTGATTTGCTGTGTATGAATCCAGTGATTTAATTAAAGAGGAATACCTGGTTGTGCAAGAA

Function

symbol description
prrt1 Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human PRRT1 (proline rich transmembrane protein 1).

NR:

description
PREDICTED: proline-rich transmembrane protein 1-like

GO:

id name namespace
GO:0009607 response to biotic stimulus biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23896 PRRT1; proline-rich transmembrane protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217351.1 True 4868 mRNA 0.42 5 6447348 6455622

Neighbor

gene id symbol gene type direction distance location
LOC122323486 neu1,LOC107694358,LOC107754788,LOC107711321,LOC107677466 coding downstream 13950 6429635 ~ 6433398 (-)
LOC122323484 neu1,LOC107677467,LOC107711305,LOC107694326,LOC107595619,LOC107754787 coding downstream 17857 6425467 ~ 6429491 (-)
prrc2a LOC107754821,LOC107694359,LOC107584310,LOC107711320,LOC107595587,LOC107677454 coding downstream 32171 6395759 ~ 6415177 (-)
csnk2b csnk2b,LOC102207154,LOC106594067,LOC101175345,LOC100710962,LOC106573472 coding downstream 52342 6390817 ~ 6395006 (-)
dtnbp1b dtnbp1b,LOC107568291,LOC107754801,LOC107731565,LOC107694327,LOC107598220 coding downstream 254658 6163823 ~ 6192690 (-)
skiv2l skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354 coding upstream 470 6456092 ~ 6473551 (-)
LOC122323305 LOC107754826,LOC107584364,LOC107694352,LOC107595620 coding upstream 22894 6478516 ~ 6484099 (-)
LOC122323303 LOC107584307,LOC107694350,LOC107711327,LOC107595591 coding upstream 30295 6485917 ~ 6494196 (-)
sacm1la sacm1la,sacm1l,LOC107694349,LOC107677458,LOC107584306,LOC107711326,LOC107754789,LOC108273174 coding upstream 38869 6494491 ~ 6508430 (-)
gabbr1b gabbr1b,gabbr1,LOC107677456,LOC107584305,LOC107595614 coding upstream 64244 6519866 ~ 6625054 (-)
G131114 NA non-coding downstream 7266 6438205 ~ 6440082 (-)
G130999 NA non-coding downstream 91873 6354956 ~ 6355475 (-)
G130982 NA non-coding downstream 154082 6248351 ~ 6293266 (-)
G130978 NA non-coding downstream 211071 6234044 ~ 6236277 (-)
G130973 NA non-coding downstream 248987 6198125 ~ 6198361 (-)
G131153 NA non-coding upstream 238270 6693892 ~ 6704443 (-)
LOC122323439 NA non-coding upstream 246861 6702483 ~ 6708065 (-)
LOC122324260 NA non-coding upstream 247701 6703323 ~ 6703389 (-)
LOC122324261 NA non-coding upstream 248249 6703871 ~ 6703937 (-)
G131165 NA non-coding upstream 298792 6754414 ~ 6755435 (-)
G131006 LOC107754818,LOC107731580 other downstream 84176 6362347 ~ 6363172 (-)
LOC122324254 NA other downstream 1041712 5404516 ~ 5405636 (-)
G130744 sema4ab,LOC107702572,LOC107672813,LOC107598230,LOC107731578,LOC107705066 other downstream 1187184 5141505 ~ 5260164 (-)
G130763 NA other downstream 1195159 5245353 ~ 5252189 (-)
LOC122323502 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other downstream 1224465 5087244 ~ 5222883 (-)
sh3bp5lb sh3bp5lb,LOC107711328,LOC107677461,LOC107694325,LOC107754828,LOC107584304,LOC108435520 other upstream 171976 6627598 ~ 6639220 (-)
polr1h znrd1,LOC107584303,LOC107754832,LOC107677479,LOC107694346,LOC107595594 other upstream 192768 6648390 ~ 6649389 (-)
srd5a1 srd5a1,LOC107691541,LOC107711310,LOC107595623,LOC107694335 other upstream 394747 6850369 ~ 6858660 (-)
LOC122323893 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other upstream 900999 7356621 ~ 7360143 (-)
LOC122324169 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 other upstream 939558 7395180 ~ 7397946 (-)

Expression


Co-expression Network