thrap3b (thrap3,LOC107681623,LOC107738943,LOC107669950,LOC107734038)


Basic Information

Item Value
gene id thrap3b
gene name thrap3,LOC107681623,LOC107738943,LOC107669950,LOC107734038
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18974162 ~ 18984673 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217373.1
CATGTGTTGATCAGGAAGCGCTGGGTCTGAGCTGCTTCGGAAGAATCTTGCGTTTCCTGAGGAGACCGAATGGCCGCTTCTCCGTTTTATTGCTTAGAAACCGTGCTTAGCTGAGCTCACGTAGGTTGTGTGTGCACAATAGATCCGTGTATGTAAAACCAGTCGTGTATTGATCAGTGATTGGCGTGTAATTCGCGCTATTCCTTCGTCGCGTGCTCGCAACGCCTCAGTCAGAGAGCTCGCTTTAATCACACCAGACTAGCCCCTCAGATACTGTGCGTATAAAGATGTCCAAGCCCCCAAATTCTGCTTCTCGGTCCCGGTCTAGATCCAGGTCTAGATCACGGTCCTACACACGATCTCACTCCAGGAGTCGCTCCCGCTCAAGGTCCAGGAAGCGCCGCTACAGCTCTAGATCAAGATCCCGTTCACACAGCAGGGAGAGGAACTATCCTTCCAGAGATTTCCAAGGCAATCGTGGGTATAACCGTGGTTTCCGTGGCTACCGGAGACCTTTTCAGTATAGGGGCAGAGGGCGTGGCTACTTCCCACGAGGTAACTATCATAGAGGTGGCAGCAACTATGGTTACCGTTCCAACAACTGGCACGGCCATAGAGACCACCACCCGCAGCAACAGTACGACCACTCTTACAGCCCTAGGAGGGGGCGTTCACGTTCCCCCACGCCACGGAAACGATCAGCAAGCCGAAGCCGCTCGCGTCATTCCGATAGATCATCATCTATGCGTTCCAGACGTTCCAGCTCTTCCTCCCGTTCCTCATCCCCACGTCGACGCAACTCTAGCGCTGGACGGCTCCATTCTAAAGAACGCAAAGAAAGGGGTTCACCAAGTGAAAGCAAGGGAACCAGCAAGGAATCATCCAAGCCTAAAGGGAGCACCCCAGAGGAGCCCGGTAGCAAATGGGAAGGCCTAACTGACTACGATGCCAGCCCCAAACGCAAAGCTGCAACTTCTGGTGGTCCGTCAGACATCAAAGTGTCCATATCTGGTGCCGGAAACGGTGGTCCATTGTGGCGAAGCATCGGCCCTGCTAGTAAAAGTCCACCTGCAAAGACGCAAAGCTCAACTGGCTTTGGGTTCTTCTCAAAGGACGAGGTGAAGAACGAAGACAAATCGGCCTCCATTTCTACCGCTttcaaaaaGTTTTtggcagaaaagaaaaagccCTTGTCAGACAGGGATAATGGCAGGGGTGACACTTTAAGCTTGGGCGACGCAGACAGCGAGAAGAGCGGCAGCAAGTTGAGAGCGGGTTTCGACGCATCTGATTTCGAAGCAAATACTGACAAAGGACTTCCATTTCTGGATGCAGAAGAAGAGGAGTATCGCCAGGAAATGAAAGACAGGAAGACTGAGGAAGAATCCAAATATAAGGACAAAACTCTTGTCACAATGCGGGACTTGACTGAAGAGCGTTTCGGAAAATGGGATGAAGATGTTGAGGAGGAACTAGACGAGGAACTTTATCGCAGTCGGAAGCATGTGTctagaaaagaagaaaaggcctccaagaagaaagaaaagaaaaagagcaggaTCAGTCCATCCTCTCCATCGCCATCCAGAGTATCAGAGAATAGAAGCAGGCCACTGTTTCCTGCTGGAAGAGAGGCCTCACCCCCCACCAAATCCTCAGCAAAGAAAGACCCGAAGTTCAATTTCAGTATAAAGGCATTCACTGATGATGGAGAAAGTTCATCAGGTGCATTAGCTAAAGAAAGACGTTTGTCAAGGGATCTTGTGCACCCTGGTAAAAAAGATCAGGAGGAGTTTCACTCGATCTTCCAGCATATTCAGTCTGCTCAGCTTCGCAGAAGCCCTTCAGAGCTATTTGCTCAACATATAGTCACCATAGTACATCACATTAAAGCTCAACATTTCCAGTCATCTGGGTTGACTCTGAATGAGCGATTTGGAATATACCAAAGAAAAGCTGCAGAGATGGAAATGATGAAGCCGAGGAAGAGTCCTGAGATCCACAGGCGTATCGATGTGTCCCCCAGTGCTTTTAAGAAGCACTCTCACCTGTTTGAGGATTTCGAAGAGAGCAGCTACAAGGATCATGGTAAAAGGCACGAGGGCGATTCATTGGACCTTCGCTTGGCAATTGAGCGTCGTAAAAAAGATCCTAAACGAGAGGGGGGAAAGAGTTCAGCTGGTTCACGCACACCCAGCCACGAACTCTCCCCTGACAGATCCTCCAAACACAAGAAGTCAAAgaaaagcaaaaagaagCGAGAACGCTCTCCgtcctcctcttcatcttcctcctcctctccttccCCACGTCAATACAGAGTGAAGGAGTACCATCCGGAGGAGCACATGGAAGGAGTAGGGGGTTTTAACAAGGCCCGTCTGGGGTCAAGGGAGTATCCGGGGCCCATGGATCGCGGCCCCCGGGAATATGAGGGTCACATGGACAGGGGTTATGAGAGGGGCAGAGGAGGATACGACCGAGGAGGATACGACAGAGGTCACGGGGGTTACGATCGGGGATTTCCGAGAATGAGAGGAAGAGGATGGAACCGGGGAAACTACCCAggcaataacaacaacaacaacaaccctcCCAATATGGGTGGCCCTTCACGTCCCCCAGATGAAGAGTGGGACCCTGAATACACCCCCAAGAGTCGGAAATATTTCCAGCACGATGACCGGGACAAGGAAGGGGAGATGAAGTGGGTGGACACTAGGGGACGCGGCAGAGGAAATTACCCTCGTGGCAGGGGCACGTTCATGGTTCGCAAGAGCGGCGGCAGCCCCAAGTGGACCCACGACATGTTCCAGGGCAACGTTGAAGAGGGAGAAATCGGAGATGGAGGCTCAGAGCACAAAGATGACGACAAGTCTGGGGAAAACACTGCTTCCAAGCCATAGACTGATTCGTATCCATTTGTGTCTGGTCTTTTCCGATGTCTCTTGCTCGGTGAGAGCCCTCGTGTGAAGTTCATCTTTGTGTGTTCAGATGTTGGACTGCAGAACCCCCGAATGGAGCCATGTCATTTATAGCATCCgcaattatttttcagtttttgtttgttttttcccctgtttgtttttggggttGTGTGGGGTGATTGAAAATAAATTCTGCCCTATGGTggctgaaattaattaattgaatttcatttaaaaagtgcaataaatCTGTGCACTTGTGCCTTAGATTTAACTGTAGTTTTAtgattccttttttttacttttttttttttcaagtagaTTTCCCCTTTTCTGTTTGGAATTGCATGTAAATTCATTCATACATGCTACAgtcttttatatttctttccCTATTGGTGTATGGTTCAGTCTCATTGGCGCGTATCCCTTGTGGACCAATACACTGTGTACTGGGCCGATTTTCTCCAGAAAATTGTCTGTTTAAAAATTGTGTACAGCTTCATTCTCCCTAACCAATTGATTCGCAGCTATATTTAGCATCCAATTTAGTTAATTTTGTTCCCTTAAATTATGCCACTAATgggtgaaagaaaaaaaatgtccacttgctttgtgaaatataattcaagttttgtttcgttttttctattttgagcaacaaaaaaatgttttagattgTCATTCATCAGATTTTAAAGTGTAGATAATAATAGAACATTCAAGACAAAGCTTACAGCGatgcatttattgcattgttAAACTATCAAAACTAACTGTATTATAGTTCATGCTGCATGTTTAGATCATGTGGTCTTCTTCATTTGCTCTCTGTACGCTGCACTGTTCACTCGTGCTGTAAGGATATAACGGGGGACTCGGCTGCTTCTTTTCAGCGTAGAAATCCTGCTTTGTGATGACAGTACTGTAACGCTGTGACTCAAAATTCTGTTAACATTTACAATCTGTCAGCTCTGTGCTTTGAGTCTCCATggtaaatttgaaataaaacccGTCCTCTGTTTGGTAAA

Function

symbol description
thrap3 Enables phosphoprotein binding activity; thyroid hormone receptor binding activity; and transcription coactivator activity. Involved in nuclear-transcribed mRNA catabolic process; positive regulation of circadian rhythm; and regulation of RNA metabolic process. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in nuclear speck. Part of mediator complex. Colocalizes with exon-exon junction complex.

NR:

description
thyroid hormone receptor-associated protein 3-like

GO: NA

KEGG:

id description
K13112 THRAP3; thyroid hormone receptor-associated protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217373.1 True 3958 mRNA 0.47 11 18974162 18984673

Neighbor

gene id symbol gene type direction distance location
LOC122323898 NA coding downstream 18002 18951681 ~ 18956160 (-)
zc3h12ab zc3h12a,si:dkey-206d17.12,LOC107734041,LOC107681625,LOC107551774,LOC107738948 coding downstream 22602 18943027 ~ 18951560 (-)
tmem170b tmem170b,LOC107669975,LOC107738955,LOC107681608,LOC107734028 coding downstream 112862 18850849 ~ 18861300 (-)
hivep1 LOC107734035,LOC107681619,LOC107551776,LOC107738951 coding downstream 154862 18766828 ~ 18819300 (-)
edn1 LOC107734027,LOC107681615,LOC107551767,LOC107669974,LOC107559691 coding downstream 207487 18761992 ~ 18766675 (-)
LOC122323972 map7d1,map7d1b,LOC107681622,LOC107734037,LOC107551771,LOC107669943 coding upstream 5559 18990232 ~ 19025335 (-)
stpg1 stpg1,LOC107669955,LOC107734031,LOC107559684,LOC107727365,LOC107681611 coding upstream 44687 19029360 ~ 19034304 (-)
fhl3b fhl3b,LOC107734040,LOC107551770,LOC107681628,LOC107669956,LOC107727270 coding upstream 79172 19063845 ~ 19080677 (-)
rragcb rragcb,LOC107669953,LOC107727266,LOC107551762,LOC107681629,LOC107700741,LOC107730935 coding upstream 96899 19081572 ~ 19088783 (-)
LOC122323475 LOC107669946,LOC107554574,LOC107727308,LOC108274547 coding upstream 396105 19380778 ~ 19408652 (-)
G134504 NA non-coding downstream 141313 18832232 ~ 18832849 (-)
G134428 NA non-coding downstream 387836 18572068 ~ 18586326 (-)
G134426 NA non-coding downstream 440662 18533173 ~ 18533500 (-)
LOC122324145 NA non-coding downstream 442145 18523200 ~ 18532017 (-)
G134411 oxr1b non-coding downstream 513263 18457165 ~ 18460899 (-)
G134592 NA non-coding upstream 62848 19047521 ~ 19057963 (-)
G134632 NA non-coding upstream 278045 19262718 ~ 19264297 (-)
LOC122323683 NA non-coding upstream 430226 19414899 ~ 19421472 (-)
G134675 NA non-coding upstream 507862 19492535 ~ 19493032 (-)
LOC122324126 NA non-coding upstream 513281 19497954 ~ 19528703 (-)
smim13 si:dkey-206d17.5,LOC107669968,LOC107559689,LOC107551766,LOC107734024,LOC106589022 other downstream 40934 18876614 ~ 18933228 (-)
LOC122324083 LOC107589493,LOC107693246,LOC107734014 other downstream 282913 18687349 ~ 18691249 (-)
cks1b cks1b,LOC107753514,LOC107589507,LOC107599584,LOC108433716,LOC103394526 other downstream 732549 18225609 ~ 18241613 (-)
si:dkey-266f7.5 NA other downstream 786133 18169523 ~ 18188029 (-)
G134318 NA other downstream 962763 18010882 ~ 18011399 (-)
khdrbs3 khdrbs3,LOC107554584,LOC107566726,LOC107687064 other upstream 558109 19542782 ~ 19652807 (-)
LOC122324012 NA other upstream 686114 19670787 ~ 19688386 (-)
G134895 NA other upstream 1397347 20382020 ~ 20382727 (-)
G134944 LOC107756202,LOC107600825,LOC107689598 other upstream 1464880 20449553 ~ 20451196 (-)
G134948 zgc:162872,LOC107756215,LOC107692254,LOC107600823 other upstream 1478276 20462949 ~ 20468681 (-)

Expression


Co-expression Network