CI01000001_05960289_05963221


Basic Information

Item Value
gene id CI01000001_05960289_05963221
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5958349 ~ 5963343 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_05960289_05963221.mRNA
CTATAAAAATGGGTTTCCATTTAAAGATCCAACAACAAAATGTTCTGCTATTCGCAGAACGAGTCAACCCATTTTAAGCAGCGTGTCTATTGGCATTTAACAAGTAGTCAGATTGGCAGTGTGACACTGCTCCACCTCCGGGCTCCACACCACAAACAGGGCAGAGTATAAGGAGGAGAACATCAGCATGGACAATAGCACATTAATGACAGCACAGGTGCGCTGGGAGGAGAAACGTGTGTCCACCAACCGCTTAAGAGCCACAGTGAAGCATCGACAGACGAAAGTGAAGTCAAACAATGACAGTGAAGAGCGAGCGCTATGATATCAACATGCTCCGCAAAGACACAATAGACCAATGCAATGACATGATCTAGTGACGCTCATGCTTGCATTGTCTGCTTTCAATATTCGCCAGTTTCTCTGAACTGGACAATCTAGAAAAGTATTCTATACAGATAAAGGTTTTTTTCGAGATCCATATGTACATGTCGTGAAGTGTATTTCACAGAGCTGTGGGCAGGGCAGTCTGTTGCATAAGTGCCGGTCTCATTCCCCAAAATGATTGTATTACATTGCAATGCATTGACTGTAGCAGTATGATCATAACTGTACCATTCCAGACGGTAATGGGGTGAAAAAAGGAGGTAACCCCGGATGGTACGGCTGATCAGTGGCACGTCAATGGAATGTAACTGAATCAAACATACTGACGTGGAAAATCATCATAGGGATTATTGTTCTGTGCAAAGATGTTGTTCTGAAATGCTAACATATGGACCAATAGCAGAATGGTGTGTCTATCAAAAGTCCACGGTGAACGTTTGCTCTGTGAACTTCGATATTGTGCAAAAGTAATGGTACCCTCACGGATTGTCCATTGCTTTAGTATCTTTGATATTTTTTTTAACTATGGTGTGGCAGTATAAGATGGATTCCCCTACCCTGGTGACCACAGTCTGCAGATATATACAGAATCTGATAAATATTTCACACACATGAGGAAAGCAATCGTGAGTGCGAATGTATTTAAAGGGCCAGCAGGTATGCATGAACTAATAGAATTATCTGAACATGTTTAAAGGGTTGATGCATTTGTTGGTGTCATCTGCACAACATAGATGTAATGCCTTTAATGTGAAAAAAAAAAAAAATCGAAGACACCATTAAATGACGAGTCTGGGCAAACCCACTGAAATCCCTAAATCTTTAAATTTCAGCTACTTTGAACAAGGTATGACATATTAACAAGGCCATTTTGCCGTATGGCTGATTGCCATTGCTGAGATGGAAAACCACCAAAATCCCACCCACGTCCATTTAATCGCTGTGATGGGATTGCCCAAATCCTCTACCCTGTAGCATATTTTAAACATAAACATGTTGTGTAAATGTTTAAAATATCATGAGCATGATGTTTGTGTTTTAAAAAAAAAAGCTTACCCTCACTTAGAGTAAAGCTACAAATTGCCCTCAAACAAAGTTTTTTTGTTTTGTTTTTTTTTTTACATAAAATGCTGTAAAACAATGACCGTTAAAATGGTGCGGCGACATATTTGTCTTCTTTTTGTTATCAGCAGACGCATTATAATTGAATTAGTCTAAGCTTCAAATTAATATTTTTGCTTTGTTAGTACTTCTTTTTTCTTGCTTTTTTATGCTTATAGGACAGACACAACACACACAGACACATAGAGAGAGAGAAATAGACAAAGTGAAAATGAAAAATAAATGTTGGTGATCACAATAAATAAATAATCAAATAAATAAATAAATAAAATGTTTTAAAGCTTATCCATAAAGAATTACTCAGAGTAATAAAAGTCATATTCTGTGATATCGCAATGATAATCCGAGCACTCATGATGGCGGTGGCGATATTAAGAAGTCAAACATGATAATAATATTGAGTTTAGTAACACCGATAAAAAGTAAAGTGAATGGACCCCTACTCCACCCGTAGGGAACATATTCCTTTGCATTTCGAGAAGTCAATAGTCACCAGCACTAAAGAACCACTAAAATCCATCGGGTCTGGATTCCTCACCTTCTCAGGTCTGTCCAAAGGAACCACAGACATGCAGCAGACTTGCCTCCTCTCCACACGGAGCCTCCCCAACCAGCATGACCCGCACAAGTCTGCATCCTCAAGAGTTTTTAGGGTCTCTGGAGCAAGGTGTGGTGGGGAGGCTGTACTGGCGGTAGGGACGGGGCGGGGGACGGGAACGCTGCGGTTGCTGGACCGGAGGGGGTGGGGGCTTTCGGAAGGCCGGATGCAGGTGGTGGTTGTGCCTCGACCACTCCGATTCGTCGTCAATGTCTGTGTCGTCGATCAGCGGGATGTTGTGGATGTAGTCATTGATGAGAAACTCTGGGTGCGCCATGAAGTTGTGGATGGAATTCCTGGACGCGGGTTTCTCGATTCCGTCGTAAAGGGAGCTACGGAACGCTTTCACCACCCGCATCTAAACGGGAACAGAGGGGACGAGGTGCAGAGGAAGACAGAGAGAAAACAGAGTGGGAGAAGTGAGGACAGAGAGAGGGTTGAGACAGAGGAGGGTGGGAGCAAAGAAATCTTTCAGTACATGTGTGATAGAAAAGACCTGAAACACTGTAGTACCTGTTCTGAACATGCCTTACAATGCACAGACAGCTCAAGATCAGGTTGCTGCAAAATTCTGAATCTGTTTGTGTCATTTGTTTTAGTGGTAAAAACTGAAATAGTGATGAGGAGAGAAAGACAGAAAGGAGGATGTCTTGATACACACATAGACACACAGCCAATGGAAGAAACAGTGCGTAAGAATCTGCAACAAAGTGCTAAGCAAAGGGGATGTGATGAATAGACAGATGGGGGTCCAGCTGGTGGGATGGAGGTAGGATGCACCCAGTGATGCTGTACTCAGTCTTTAGAGGAGCTTTGACTTCCTCCTCATTGGTACTAGCAGCATTCAGGGATGTGGTAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_05960289_05963221.mRNA True 2968 mRNA 0.42 4 5958349 5963343

Neighbor

gene id symbol gene type direction distance location
CI01000001_05942155_05943721 NA coding upstream 14330 5942155 ~ 5944019 (+)
CI01000001_05933655_05938581 FLNA coding upstream 19108 5933655 ~ 5939241 (+)
CI01000001_05902661_05905496 NA coding upstream 52563 5902370 ~ 5905786 (+)
CI01000001_05883364_05897204 NA coding upstream 61135 5879575 ~ 5897214 (+)
CI01000001_05861486_05864311 NA coding upstream 93745 5861445 ~ 5864604 (+)
CI01000001_06040916_06041645 NA coding downstream 77573 6040916 ~ 6042610 (+)
CI01000001_06121398_06124748 TNNC1.L, TNNC1B, TNNC1, TNNC1A coding downstream 158055 6121398 ~ 6124952 (+)
CI01000001_06297032_06300530 TNNC2, TNNC2.L coding downstream 333689 6297032 ~ 6300660 (+)
CI01000001_06303405_06305351 TNNC2 coding downstream 340062 6303405 ~ 6305351 (+)
CI01000001_06309664_06321614 SLC35C2 coding downstream 346018 6309361 ~ 6322088 (+)
G16090 NA non-coding upstream 72308 5885790 ~ 5886041 (+)
G16084 NA non-coding upstream 81077 5877033 ~ 5877272 (+)
G16080 NA non-coding upstream 86457 5871606 ~ 5871892 (+)
CI01000001_05842665_05846705 KCTD6B, KCTD6, KCTD6A non-coding upstream 111439 5842665 ~ 5846924 (+)
G16071 NA non-coding upstream 172655 5785342 ~ 5785694 (+)
G16112 NA non-coding downstream 44896 6008239 ~ 6009382 (+)
G16131 NA non-coding downstream 93796 6057139 ~ 6057348 (+)
G16134 NA non-coding downstream 105265 6068608 ~ 6068868 (+)
G16141 NA non-coding downstream 119343 6082686 ~ 6083444 (+)
G16040 NA non-coding downstream 142366 6105709 ~ 6126465 (+)
G15995 NA other upstream 243398 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 668393 5279837 ~ 5287698 (+)
G15794 NA other upstream 893645 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 2336898 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 4287345 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 1569229 7531541 ~ 7540586 (+)
G17234 NA other downstream 2068781 8032124 ~ 8032483 (+)
G17353 NA other downstream 3252679 9216022 ~ 9228859 (+)
G17354 NA other downstream 3271120 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 3454985 9435836 ~ 9436373 (+)

Expression


Co-expression Network