glcci1a (glcci1,LOC107702447,LOC107731573)


Basic Information

Item Value
gene id glcci1a
gene name glcci1,LOC107702447,LOC107731573
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5675485 ~ 5705310 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217403.1
TGAAGTGCCTGTCATTTGGAGTAACAGCAGGCGCGAGAGGGGTGCCGAGACACACGACAGTCGGGATAAgcgtcaactttttttttagctttccaTACTCGGATGAACTCATTTTAAAGACTAGTCAGCGTCAGCCAAACACCCGCATGACCGAAGGAGCGAAACGTCGTTCAGGGGAGCCGCGCCGCTACAAAACCGGAGCTGCGCGCTGCGCCGACACTGTAACTGTTAAAGAAGTTTAATTAATGACTTAAGTTAATGAATGCCCGGGGAGGAATTTATTCGCTTATTTTGCAGTGAAACTACCACATAGTTAGGTTCAGTCATGTCAGCATCACCTGTGCACTCAAGTCGGGTCAGGCGCAGCAATGACGGGTCCCCCATCAAcgcctcctcttcctcctcctcctcctcctcctcctctttagCATCCTCATCCTCCGCCGGCAACACGAGCCGGTTGCAGCCCATTCGTGCCACGGTGCCCTACCAGCTCCTGCGTGGAAATCAGCAGCACAGCCCAACCCGCCCTCCcgcgtcctcctcctcctcctcctcttccatCTCAGTCGGAAGCAACACCGAACCGACAGCATCAGCCCCGCACCGCAGCTCCAGTCCCGGCAGCCCGGCAGGAAGCGGCTCGCTGGACGCTCGGCTGATCCCGCGGCAGAGGCGCTCTCCTCCGGAGCCCGGGAGCTCACCGGAGCGCTGCCCTCATTCACCTGTCCTCAGAGCTGAGAGGTCAAAGTCGCAACAGGTGCGAAGCACAGGTGCTATCAGACGGACTTCCTCCCTGGGTGCTATCACCGGGCCCTACCTGATAGGGCAGTGGCCACGTGAATCCCACCTGCACAGCCCCTCGTGCATGAAAGACAAGTCCACACAGACTCCTGGATGTTGGAGTGACGAGAGGGAAGAGAAAGGGAACACACACCAGCGCTCGGCGTCCTGGGGCAGCTCTGACCATCTTAAAGagATCGCCAAGCTCCGGCTCCAGCTGCAGCGCAGTAAGCCGAGCGGAGGCCGGCCGTGTAAGGACACTCTCCACTCCTCCATCACTGCCACCTCCGTCAGCACAGCCAGCCAAGCCCCGTCGTCCATGTCGAAGTCGGCACAGATGCCACTGTCCAACATCACAGTGCCAAAGCCCTCCATCTCCAGGGTTCCCAGCAGCATGGAGGGCATCAACCATGAGCTGGAGAAAGTCTTCATCAAAGACaacggagagaaagaggagcTCAAGGCTCTGGAGGTCCCTGACGGGCGACGGGCCCCGTTTCCTCCTCAGCagcgcagcagcagcagtcgtGGTATAGACACTCAGACGCCGTCAGCGCCGAGGCGCTCCAGCAGCTGCTCCAGCCTCTCGCCCTGCCCCTCGCCCGCATGCCCGGCCCGCTCCCACGACGGCAGCCCGTACTCCACCGACGAGATGCTGGACGACAGAGACAAAGACAGCGGCAGCAGTTCTCCTCTGCCTAAATTCGCCTCGTCCCCGAAACCCAACAACAGCTACATGTTCAAACGAGAGCCACCAGAGGGCTGCGAGAAGATCAAAGTGTTTGAGGAAATGACGTCCAGACAGTCGGCCACCGTCCCCCTTTTCTCCTGCCCCGACAAAAACAAGGTCAACTTCATCCCCACGGGCTCTGCCTTCTGCCCCGTCAAGCTCCCGGGATCCCAGCTCCAGCACTCGGGCTCCCAGCAGGAGGACGAGGAGCGAGAGGAGAGCCAGGCCGGCCCCAGCAGCAGCGGCTCACAGCACCACCACCACGTGCCCACTCAGGTCTCCACCAGCACGAGCACAGACGACCCTCCCGAATCGCCCTCACAATCGTCCACAATCGTTCAGAACTTTGAAGTCAGCTAAACGCGGCAGAGCTGGTCTCGGTCGCGCCGCTCGTCCCCGTGTAGAGCACCcaaacctcctcctcctcctcctcttcctctctctctctccgatGGACCCCACCTTTGTGCTGAATCTTTACTATCTGCATGGCATAGCAACGAGAATCGCAAATGCGCAGGCAGCCGAAGAGTGGCGTCTGGACGGGAACGGGATGCGTTTTTTTTTGGGAAAGGACCTTAGAATATGCAAATCCAAAATTCAAATGGCTTCACTGTTATCTCGATCGACGAGTGAGAGTCTCATAGGAAAAAtcgtatatatttattaaatttgccTATTGATGAGTTCGGTCACATTCCAGATATTCccgttttgctttttttttactttacattttgactttttatttggtcgttttgctttttttcGTGGTACTCCTCCATCTGGTTCGATTCCGCGTTGATCCCGAGCAAACGCAGCTTTGCTTTCGTCGTGTGCTTAAAATTTAAGCAAAGTGGCTTTTGTACGAGCACTATAATCAGCGCAAAGCCACCGAGTTACGAGGGGAAAGACGACTGACGCTTTCAGGAAGGTCTCACTAGTGTCAGGGCATGCATTTGAAACTGATCGTatgtttaacattaaattatgtGTCGTGTTCTCTTTCAACATCCACAGTATAAataagctctctctctctatcaatatatctatatatgagAAGtctatatataaagaaaaagcttgtttgaatttaaaactgTGTACTGCTGTGTTATGTGCGTTATGGGAAATGAGCTGTACTCCAGGGGTCGACGTCCTGAAGGTTTTGTTTTCACTCTCGGTTGCACGGTGTCCGCCTGCGGCCCACCTCGCTTCAGGCGCATCACGCGCGGTTTAAACTCAGGTAAAACTCCACCTCATCCATCTCTGCGCTCCATCGCGTCCCACGTCCTCACACTCACCGTTTAATAGGACAAAGTGCAGCTCAGATCAGGGGTTTTGGAGGGCGCcgtttaaaggagtagttcacccaaacatcatttactcatcctcggGTAGTTCGAAAGCTGTATGAGTTTCTATTGACTTTGGGTCACCGTTGATTCCcatggtattttttatttttattttttttcagtggagaccgaaaacagcctggttacaaactttttttgggtgaactattcctgagTGGCATGTTGAAATCGTGAGATGATTTTgataataaaagttttactttcTTTTAGAAACACCGTAATAAACCTTTTAAGTTTCAAGAATGAAATCATAACGCTATGAAATCAAAGTACACCAACCCCGGCTTCCACAGACGAGGCTTAAGACTAGTCCTAGACTAACATGCAAGTCTTAGCCGTTTCAGCTGAaataaacttgcactgactgattttaaaatacatcagtgcctttgttttgtctccaCCTttagcatgtttataaaaattacttaaatgtcctgaTTAAACTATGGACTGATCCTGGTTTAGCcgaagccctgtctgtgaaaccgggccCAAAACAAATGGTAAAGGCCGTTCTGGAGTATGATTCCTGTTACTTTACATCTTCACTTcttgattttatgttttcattttatcattGTAAGACTGAgacgttatttttttataacgtCTTGTAACTTTTACATCTTTATTCTCAAAACCGTCAACATTTTTTCCAGCTTTAACGTGCTATTAAGACATGCTGCTAGtgatagtttaaaataaaagggtgaatttcacaaataaatgtttttattttttaggacCATTAAAATTGCATTGTGATTCGAAAGAAAATGCCATGTATACAAATAACACGtgtataaaatagaaaaaaaattataatgaaattttTCACATGGAAATTTGAGGATTAATGAACTTATTGGTCATTAATGTCGCAATGCAAAATGTGAAGAgcttatttgcaaaaactgttaaaagctGACTTATCTATGTTTGCAAATGAGCTCATCATCTCTTAATGGGCCTAAAACAAATATTCAACTAATTTAagcattttgaaatgtgaatattaaatagaaaattgaGAGCTTTCGTGAGATTCACCTAAAAGCTTGGCTTAATACAAGCAGAATAtatttcaatcaaaaaaaaaaaacaagcattaaatatttaaatcaatctATGCCCAAAGGTTTTTTCATCTGCAGTTAAACGGGAAAAAACCCCAAATCTATCCACAttgcacatacatttttataagtaTTGTTGGCTGTTGTGACAACAAAAGCATGCCTTTATGATTTTCACTGATTGTCAATAATAATCGCCGTTTTGTGCAGGAACTAATGACAAGGCAAGTATGATTAGTCTCTTCTGGTCTGAAAGCAGAATTTTTCAAATCGTCAAACAATAGCGTATTGTGCTTTTGCAATCGATAGAACGATATTAATTTACCCATCTCGTAAGATCAACCAATGCATAATATCACGCGATCGATAAGAAAGGCTTTAAAAGTAACAGTGCGACCTTTTATGCTGCACCTTATAAAGACCAAGTAGTTTTAGCAAGTGAAGGGTTTGCAATAATCGCGCTCTTTTCTTTCAAATGCTCCAAAATCTGCATAATTTCACCTCCATTCCGTACACGTGTGTTTCTGGAGCTGTTGATGAAGCCATCGAAAGCACATTGCTGGCCGTCTTGGGAGAGGTGTTTTGCGGATCAGGTGAAAAGTCAGGATGACCTGTTCGCACGCAATGGCAATAAAGCGTTTTGTTGTTGTGACCCTACAAACCAGATGCGTTTGTGAATGGAGGTGGATGGATTTGAAGAGGAACAATGTTGACTGAGGACGTTTTGGAAGCGTATCACCCGCCTAGTGATTGCTCTTTGCCTATAGCCAATTGTCACGTcgagaaaatgatttttaaagccTTGTAGCTTGAATTGTTTTCCTGCGGCGGAGGCTGCTGAGCTTGCGTAAGGTTTTAGGCCCACTGTCCGCGTCCGTATACGAATGACAGTATCAAAAGCCACACTTTCTTCAACTTTGAACTTTTATCCTTCAACTGTTTCTTTACTTCAATAATAGGAATATTGtgtcttatttaaataaaataatcattagaAATAAAA

Function

symbol description
glcci1 Predicted to be active in cytoplasm.

NR:

description
PREDICTED: glucocorticoid-induced transcript 1 protein-like isoform X1

GO:

id name namespace
GO:0003094 glomerular filtration biological_process
GO:0072015 glomerular visceral epithelial cell development biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217403.1 True 4977 mRNA 0.47 8 5675485 5705310

Neighbor

gene id symbol gene type direction distance location
rims3 rims3,LOC107672861,LOC107598211,LOC107702460,LOC107571463,LOC107731575 coding downstream 5114 5614268 ~ 5670371 (-)
ptp4a3a ptp4a3,LOC107702466,LOC107571462,LOC107598212,LOC107731571,LOC107738588,LOC108272580,LOC103031245 coding downstream 65626 5586537 ~ 5609859 (-)
xkr8.3 LOC107598214,LOC107731550,LOC107702601,LOC107738589,LOC107672867 coding downstream 148315 5523080 ~ 5527170 (-)
LOC122323471 LOC107738589,LOC107571461,LOC107672867,LOC107598215,LOC107731566,LOC107702687 coding downstream 155651 5515027 ~ 5519834 (-)
LOC122323472 LOC107598215 coding downstream 164829 5506052 ~ 5510656 (-)
umad1 si:dkey-119m17.2,umad1,LOC107598207,LOC107568281 coding upstream 839 5706149 ~ 5716287 (-)
LOC122323412 c1galt1,si:dkey-202e17.1,LOC107702589,LOC107568284,LOC107754798,LOC107731548 coding upstream 34009 5739319 ~ 5744577 (-)
LOC122323838 npr1a,LOC107694365,LOC107754786,LOC107731544,LOC107677481,LOC107595610,LOC107584346 coding upstream 106674 5811984 ~ 5836378 (-)
asns asns,LOC107754811,LOC107731557,LOC107702657,LOC107672863 coding upstream 218315 5923625 ~ 5932827 (-)
bloc1s4 bloc1s4,LOC107672822,LOC107568287,LOC107702415,LOC107731556,LOC107598233 coding upstream 228322 5933632 ~ 5938584 (-)
G130880 NA non-coding downstream 607 5674554 ~ 5674878 (-)
G130827 NA non-coding downstream 152519 5520939 ~ 5522966 (-)
G130804 NA non-coding downstream 234620 5440426 ~ 5440865 (-)
G130801 NA non-coding downstream 241556 5433562 ~ 5433929 (-)
G130764 NA non-coding downstream 322223 5345595 ~ 5353262 (-)
G130914 NA non-coding upstream 40538 5745848 ~ 5876713 (-)
G130920 NA non-coding upstream 47275 5752585 ~ 5883367 (-)
LOC122324223 NA non-coding upstream 133483 5838793 ~ 5847759 (-)
G130955 NA non-coding upstream 401829 6107139 ~ 6162535 (-)
G130969 jarid2,LOC107568290,LOC107702394,LOC107754814,LOC107694367,LOC107731546 non-coding upstream 447729 6153039 ~ 6155564 (-)
LOC122324254 NA other downstream 269849 5404516 ~ 5405636 (-)
G130744 sema4ab,LOC107702572,LOC107672813,LOC107598230,LOC107731578,LOC107705066 other downstream 415321 5141505 ~ 5260164 (-)
G130763 NA other downstream 423296 5245353 ~ 5252189 (-)
LOC122323502 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other downstream 452602 5087244 ~ 5222883 (-)
G130696 NA other downstream 733653 4743572 ~ 4941832 (-)
G131006 LOC107754818,LOC107731580 other upstream 657037 6362347 ~ 6363172 (-)
sh3bp5lb sh3bp5lb,LOC107711328,LOC107677461,LOC107694325,LOC107754828,LOC107584304,LOC108435520 other upstream 922288 6627598 ~ 6639220 (-)
polr1h znrd1,LOC107584303,LOC107754832,LOC107677479,LOC107694346,LOC107595594 other upstream 943080 6648390 ~ 6649389 (-)
srd5a1 srd5a1,LOC107691541,LOC107711310,LOC107595623,LOC107694335 other upstream 1145059 6850369 ~ 6858660 (-)
LOC122323893 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other upstream 1651311 7356621 ~ 7360143 (-)

Expression


Co-expression Network