snx10a (LOC107592007,LOC107748666,LOC107656653,LOC107710327,LOC107688406,LOC107602366)


Basic Information

Item Value
gene id snx10a
gene name LOC107592007,LOC107748666,LOC107656653,LOC107710327,LOC107688406,LOC107602366
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15834904 ~ 15839908 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217413.1
TGAGAGCAGCGCATGCGCACACCGAATTCAGAAAAACTTTCATATCCCTCACGCGTACTTGTTTGCCGCTTTCAATCACATCAGTCCCAGGAGCACCTGGACTGGACCGAGGCGGCAGAAAAACACGACACGACACGACACGACAGAAAAAGgtcaAATCTCTGAAATGGAAAACACAAACCTTGTGAATAAGGAGTTTGTAAGCGTATGGGTACGAGATCCTCAGGTACACAAGGAGGATTTCTGGCACGCATACATCACCTATGAGATCTGCCTTCATACCAATAGCATGTGTTTCCGGAAGAAGACCTCTTGTGTGAGAAGGAGGTATAGCGAGTTTGTTTGGCTGCGTCAAAAACTACAGAACAATGCTCTGCTTATAGAGTTACCTAAACTACCTCCCGGGAATCCTTTCTTCAATCTCAATAGTGATTTCCAGATCACTCAAAGGATGCAGGGGCTGCAGCAGTTTCTTGAGGCaGTTATACAGACACCATTACTGCTGTCAGACAGTCGACTGCACCTGTTCTTGCAATCGCAGCTGAGCCTTGCAAAAATGGACGCGTGTGCGCAGGGACAGACACATTACACGGTCGCTCAGGCAATACAGCGATGTGTCGGGTGTACCCGTTTCCCTGTGGAGGAACAGCATCAAGAAGAAGACAGCAAAACATGCTGTGACTCAGACTGTGAAAGtaCAACGTCCTCTGGCTTGGGCAATAGTTTAGGACGTGCCACACCTGTTGAGGAAGACTCTTCCTATAATGAAAGCTTTTCCCATGAATTTCATGTCACGAACCCTGAGGCCGAACTCTGTAGCAGCCTGTCTTCATCGCCTAGCAACCAGTAACATGTGCACTCTTATATGAACTCAGTAGATGTATACAAACACATCCACGCATACTCTGACAAAGAGAGCTGCTGCCCAGTTGCTGCTTCGAGCCTCCAGAGTTATATTTGGATGGACATTGAAACAAAAAAGTTCTTGattactgttttattacatgttgtgtttgtgttgttttgatgtcttttaaaaaaatacagagatatctttatttaatttttgcgGTGGTTATGTAAAATAATCCTTTACTAAAAGGCTGACCTGCAAAGGACAAATGCCTAGTGAATAATAAGCATTTTTCTTGATACTGTCATCGTGTGCCTGACAAagtagctttttaaaatgctttaaatgtaccgatgtggttttgtttaactttttttttttttatatatatatacaaagtaaGCTGACAGttcattactttaaatgtttcttaaaaattcTTATCACAttaacatttctaaatgttACTATGATAAGGGGACTGTAAATTTGtgaagatatatatttttaggtacatttttattgtgattcCGTGTATATTTAgcgttaaattaataaaaccaaTTTTTAATACTAGTTGTGAATTTgttgttgaaatgtaaatgatggAGATAGTTCTGTTACCTAAAGATGATAATACATTATCTAAATAAGGGcgtaaatgctaaataatttcGCAGATGCAGAAAGAGAATAGTTTCTGCTCATTGAAGCCAATATCCATTCAATTCATAAGAGTAACTATATATACCAGAAAGTTCGATCAGTTTAGAttaaaattattactaatatgagggggaaaaaataaggTAAATAAGAGAAAGATGGCTATAGccacatttacatttcctttGCATGGACCACTTGTTTAAAAGATTAAGAGTAGTTTGCTCTTAACCCGGTCACACATGCTAAACGGTTGTcttttttcatctctctttcATTCTGCACTCACACTGCAGCATTTTTCAGTATCTAATTGTAGTTTAAGAGAGATTAACTTCTCAATAAATGAGGGATGAAGTTTTTGACATAAATGTTTGGTTGTAACCGCTGGACTGATTGGGGGTTTGTTCGATCTGCGTAGGTGTAAATTCATCAGCGTCTAGCAGCAGCCGATAAACACTTTCAGTATTGTCATCCAGATCACCAGACTCACAAAACCTCACCAATCTCTGCCACTGCCAATCACCATCACTGTGGTACCAACTAAACCCACTTTcctttatatgt

Function

NR:

description
PREDICTED: sorting nexin-10A-like isoform X1

GO:

id name namespace
GO:0071539 protein localization to centrosome biological_process
GO:0061512 protein localization to cilium biological_process
GO:0015031 protein transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0070986 left/right axis specification biological_process
GO:0005813 centrosome cellular_component
GO:0010008 endosome membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17924 SNX10_11; sorting nexin-10/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217413.1 True 2086 mRNA 0.39 7 15834904 15839908

Neighbor

gene id symbol gene type direction distance location
tax1bp1a tax1bp1a,LOC107654769,LOC107592002,LOC107710350,LOC107748654,LOC107688347 coding downstream 132749 15685154 ~ 15702155 (-)
creb5a creb5a,LOC107748653,LOC107592000,LOC107710349,LOC107602393,LOC107654766,LOC107688348 coding downstream 165938 15661683 ~ 15668966 (-)
wipf3 sb:cb649,wipf3,LOC107592062,LOC107602389,LOC107688351,LOC107592063,LOC107654765 coding downstream 192447 15636663 ~ 15642457 (-)
LOC122323318 NA coding downstream 230813 15598655 ~ 15604091 (-)
LOC122323317 sall3,sall3b,LOC107696994,LOC107592031,LOC107739555,LOC107563697,LOC107656642 coding downstream 238621 15588991 ~ 15596283 (-)
cbx3a cbx3a,LOC107656668,LOC107592008,LOC107688340,LOC107602402 coding upstream 3775 15843683 ~ 15847374 (-)
nfe2l3 nfe2l3,LOC107748669,LOC107656667,LOC107710360,LOC107592065,LOC107602401 coding upstream 8690 15848598 ~ 15854316 (-)
pals2b mpp6b,LOC107748671,LOC107592011,LOC107656663 coding upstream 62883 15902791 ~ 15919610 (-)
fam221a fam221a,LOC107748673,LOC107592014,LOC107656661,LOC107739639,LOC107688403 coding upstream 91976 15931884 ~ 15936477 (-)
gpnmb gpnmb,LOC107656657,LOC107688332,LOC107739567,LOC107748677 coding upstream 136424 15976332 ~ 15983111 (-)
LOC122323540 NA non-coding downstream 32092 15800785 ~ 15802812 (-)
LOC122323539 NA non-coding downstream 35776 15797298 ~ 15799128 (-)
G133450 NA non-coding downstream 55270 15779090 ~ 15779634 (-)
G133444 NA non-coding downstream 63826 15770695 ~ 15771078 (-)
G133392 NA non-coding downstream 75264 15759348 ~ 15759640 (-)
G133469 NA non-coding upstream 15756 15855664 ~ 15855934 (-)
G133470 NA non-coding upstream 23034 15862942 ~ 15863149 (-)
G133476 NA non-coding upstream 41036 15880944 ~ 15881577 (-)
G133487 NA non-coding upstream 56908 15896816 ~ 15898769 (-)
G133499 NA non-coding upstream 97532 15937440 ~ 15938811 (-)
evx1 evx1,LOC107688412,LOC107602371,LOC107710323,LOC107654696,LOC107748750,LOC107592093 other downstream 94575 15736947 ~ 15740329 (-)
G133373 LOC107748749,LOC107592092,LOC107654694,LOC107710322,LOC107688413,LOC107602391 other downstream 174184 15659919 ~ 15660720 (-)
LOC122323308 LOC107748748,LOC107592064,LOC107710321,LOC107688414,LOC107602392 other downstream 186325 15644862 ~ 15648579 (-)
G133217 NA other downstream 465168 15366434 ~ 15369736 (-)
zgc:114119 LOC107654731,LOC107688423,LOC107706242,LOC107754290,LOC107592983 other downstream 942986 14887528 ~ 14891918 (-)
npy LOC107592012,LOC107748754,LOC107656665,LOC107688404 other upstream 82315 15922223 ~ 15924285 (-)
mbpa mbpa,tshz1,LOC107563706,LOC107748691,LOC107592027,LOC107739558,LOC107696938,LOC107688322,LOC107593600,LOC107592029,LOC107696978,LOC107739556,LOC108429099 other upstream 441049 16280957 ~ 16508595 (-)
G133834 pkhd1l1,LOC107592039,LOC107748704,LOC107739541,LOC107656576,LOC107563710 other upstream 1017071 16856979 ~ 16869564 (-)
LOC122323321 NA other upstream 1043079 16882987 ~ 16883480 (-)
G133842 NA other upstream 1046552 16886460 ~ 16887000 (-)

Expression


Co-expression Network