ube2e1 (ube2e1,LOC107655879,LOC107565235,LOC107743927,LOC105903698,LOC107700659)


Basic Information

Item Value
gene id ube2e1
gene name ube2e1,LOC107655879,LOC107565235,LOC107743927,LOC105903698,LOC107700659
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 1991179 ~ 2005034 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217488.1
AGGAGCGTTTTGTGCTGATATGTATTACGTGTTTGAAcgacgtttgtgtgtgtgcgcgcgcgcgcgtgtgtgtgtgtgtctgcagcagcagcagcacttcCGCTCTGAGAGACACGCGCGTCCACGGACACACACCGACACAAAGAGAGATCGGGATGTCGGATGAGGACTCGCGTGCCAGCTCTagttcatcctcctcttcctcatcttcctccACCCATCAGCAGCAGGAGAAAGACACACCtgggaaaaagagagacaacAAAGCCAATATGAGCAAGACCTCCAAACTCCTCTCCACCAGCGCCAAGAGGATTCAGAAGGAGCTGGCTGACATCATGTTGGACCCGCCACCGAACTGCAGtgcGGGCCCTAAAGGAGACAACATCTACGAGTGGAGGTCCACTATCCTGGGTCCTCCAGGGTCAGTGTATGAAGGAGGAGTGTTCTTCCTGGACATCGCTTTCACTCCAGACTACCCCTTCAAACCACCCAAGGTGACGTTTCGCACGAGGATCTACCACTGCAACATCAACAGTCAGGGGGTGATCTGTCTGGACATCTTGAAGGACAACTGGAGCCCGGCGCTCACCATCTCCAAAGTGCTGCTGTCCATCTGCTCTCTCCTCACAGACTGTAACCCTGCTGATCCTCTGGTAGGAAGCATCGCCACGCAGTACACAACCAACAGACCGGAGCACGACAGGATAGCCAAACAGTGGACCAAACGCTACGCCACATAAAGAGCGCCGCTGCCTGCCGGACGTCTGTGGGAGGGTGGGACGGGACGGGGAGGAGCTATGGAGAGGAAGTGGGCGGGTGGGATGGGGATCCATAGGGTAGAGACACAGGGTGGATTTTATGATGGAATTTAAATTTCCATTTCAATTGTTTTCTTTCcctgcatatatttttttgttgttgttgtgtttgtttcacTTGGCTCAAGTAGCATCATGATTTGACAAAACGGATCTTAATGTGCGTTTTCTTTGCCTTCCTGTTGTAAATTGGTTTTATTTGGAGCTTCCTCATTCTTGTCAAATGAAGTCACAGCATGAGCCTATGGCAGGATTGTTCCATGTATGTATTTCCCCACCGATATTAAAGCTGATGTTGGTGTATAGAGTCGTGCCGTATCTTTCAACGCAAGCATTCAGGAGAACGCTGATAAAAGCCTGTCAGGAACAACCTTAAGAAAATATGGCAAGGACTTTTCTGCTTCGTGAAATCAAATTCTCTTTACAGTAACGCAACTGAAAAATTAAACGAAGAATGTATACATTATA

Function

symbol description
ube2e1 Orthologous to human UBE2E1 (ubiquitin conjugating enzyme E2 E1).

NR:

description
ubiquitin-conjugating enzyme E2 E1 isoform X2

GO:

id name namespace
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K20217 UBE2E; ubiquitin-conjugating enzyme E2 E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217488.1 True 1289 mRNA 0.49 6 1991179 2005034

Neighbor

gene id symbol gene type direction distance location
rpl15 rpl15 coding downstream 3990 1983801 ~ 1987189 (-)
nr1d2b nr1d2b,LOC107565234,LOC107700655,LOC107719847,LOC107569910,LOC107743928 coding downstream 12839 1970767 ~ 1978340 (-)
LOC122324230 rarb,LOC107700643,LOC107719850,LOC107717720,LOC107563215,LOC107565243,LOC107103632 coding downstream 127182 1704996 ~ 1863997 (-)
LOC122323559 LOC107700650,LOC107719859,LOC107563207,LOC107717718,LOC107565241 coding downstream 334155 1645568 ~ 1657024 (-)
LOC122323557 LOC107717726,LOC107700649,LOC107565231,LOC107670692,LOC107563213,LOC107719860 coding downstream 364537 1621101 ~ 1626642 (-)
LOC122324005 NA coding upstream 55080 2060114 ~ 2061725 (-)
cited4a LOC107689549,LOC107556893,LOC107595899,LOC107732920,LOC107675931 coding upstream 248804 2253838 ~ 2258434 (-)
stmn1a LOC103471979,LOC105933928,LOC102781761,LOC107098265,LOC104924882,LOC103142368,LOC100709328 coding upstream 728702 2733736 ~ 2736130 (-)
maneal si:ch211-30b16.2,LOC107569868,LOC107686956,LOC107708724,LOC107719841,LOC107693995 coding upstream 871890 2876924 ~ 2884651 (-)
oprd1a oprd1a,LOC107688080,LOC107595906,LOC107732912,LOC107689567,LOC108411271 coding upstream 998958 3003992 ~ 3022358 (-)
LOC122324231 NA non-coding downstream 187084 1795736 ~ 1804095 (-)
G129793 NA non-coding downstream 318403 1669624 ~ 1672776 (-)
G129772 LOC107565238,LOC107717719,LOC107563205,LOC107700642 non-coding downstream 376214 1613941 ~ 1614965 (-)
G129770 LOC107700642,LOC107717719,LOC107565238,LOC107563205 non-coding downstream 378940 1608103 ~ 1612239 (-)
G129750 NA non-coding downstream 405760 1584071 ~ 1585419 (-)
LOC122324022 NA non-coding upstream 1540 2006574 ~ 2012208 (-)
G129876 NA non-coding upstream 21203 2026237 ~ 2027202 (-)
G129887 NA non-coding upstream 77200 2082234 ~ 2082742 (-)
G129889 NA non-coding upstream 97669 2102703 ~ 2103104 (-)
LOC122323752 NA non-coding upstream 117652 2122686 ~ 2129112 (-)
G129738 NA other downstream 491773 1498688 ~ 1499406 (-)
pef1 pef1,LOC107664714,LOC107726139,LOC107698987,LOC107712637 other downstream 703973 1281539 ~ 1287206 (-)
smim12 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other downstream 710670 1278912 ~ 1280509 (-)
LOC122323272 NA other downstream 896276 1072151 ~ 1094903 (-)
thsd7aa NA other downstream 939055 1017155 ~ 1052124 (-)
LOC122323398 pkib,LOC107098269 other upstream 734970 2740004 ~ 2751570 (-)
G130000 NA other upstream 820310 2825344 ~ 2832956 (-)
G130041 LOC107687396,LOC107708727,LOC107595896 other upstream 903455 2908489 ~ 2911603 (-)
G130083 LOC103461248,LOC102786159 other upstream 1144120 3149154 ~ 3149789 (-)
LOC122323345 fam46bb,LOC107712594,LOC107700817,LOC107737782,LOC108413340,LOC103370123 other upstream 1308355 3313389 ~ 3323828 (-)

Expression


Co-expression Network