rpl15 (rpl15)


Basic Information

Item Value
gene id rpl15
gene name rpl15
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 1983801 ~ 1987189 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217490.1
TAAAGCATTATGGGTactttttctctccctttccGGTTAGTACGCCATCAAGTGAGGCATTATGGGAGCGTACAAGTACATGCAGGAGCTCTGGAGGAAGAAGCAGTCGGACGTGATGAGGTTCCTCCTGCGCGTCCGCTGCTGGCAGTACCGTCAGCTGTCTTCCCTTCACCGGGCCCCGAGACCCACCAGACCCGATAAAGCCCGCAGGCTGGGATACAAGGCCAAGCAGGGTTACGTCATCTACCGCATCCGCGTGCGCCGTGGAGGCCGCAAGCGCCCCGTGCCTAAAGGTGCCACCTACGGCAAGCCCGTGCACCACGGCGTCAACCAGATCAAGTTTGCACGCAGCCTGCAGTCAGTAGCTGAGGAGCGTGCGGGCcgtcactgtggaggtctgcgGGTGCTTAACTCTTACTGGGTCGGAGAAGACTCCACATACAAATTCTTTGAAGTGATCCTCATCGACACCTTCCACAAAGCCATCAGACGCAACCCCGACACGCAATGGATCACCAAGGCTGTGCACAAGCACAGGGAGATGCGCGGGCTCACGTCCGCCGGCAAGAAGAGCCGTGGTTTGGGCAAGGGCCACAAGTTCCACCTTACCATCGGCGGCTCTCGGCGCGCGGCCTGGAAGAGACGCAACACCCTGCAGCTGCACCGTTACCGATAAACAATGCAGGCTACAACTGTACATTTGCTCAAATAAAGAACCTTTGTATGGTCA

Function

symbol description
rpl15 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 12. Orthologous to human RPL15 (ribosomal protein L15).

NR:

description
PREDICTED: 60S ribosomal protein L15

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02877 RP-L15e, RPL15; large subunit ribosomal protein L15e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217490.1 True 730 mRNA 0.58 4 1983801 1987189

Neighbor

gene id symbol gene type direction distance location
nr1d2b nr1d2b,LOC107565234,LOC107700655,LOC107719847,LOC107569910,LOC107743928 coding downstream 5461 1970767 ~ 1978340 (-)
LOC122324230 rarb,LOC107700643,LOC107719850,LOC107717720,LOC107563215,LOC107565243,LOC107103632 coding downstream 119804 1704996 ~ 1863997 (-)
LOC122323559 LOC107700650,LOC107719859,LOC107563207,LOC107717718,LOC107565241 coding downstream 326777 1645568 ~ 1657024 (-)
LOC122323557 LOC107717726,LOC107700649,LOC107565231,LOC107670692,LOC107563213,LOC107719860 coding downstream 357159 1621101 ~ 1626642 (-)
LOC122323396 NA coding downstream 480068 1502295 ~ 1503733 (-)
ube2e1 ube2e1,LOC107655879,LOC107565235,LOC107743927,LOC105903698,LOC107700659 coding upstream 3990 1991179 ~ 2005034 (-)
LOC122324005 NA coding upstream 72925 2060114 ~ 2061725 (-)
cited4a LOC107689549,LOC107556893,LOC107595899,LOC107732920,LOC107675931 coding upstream 266649 2253838 ~ 2258434 (-)
stmn1a LOC103471979,LOC105933928,LOC102781761,LOC107098265,LOC104924882,LOC103142368,LOC100709328 coding upstream 746547 2733736 ~ 2736130 (-)
maneal si:ch211-30b16.2,LOC107569868,LOC107686956,LOC107708724,LOC107719841,LOC107693995 coding upstream 889735 2876924 ~ 2884651 (-)
LOC122324231 NA non-coding downstream 179706 1795736 ~ 1804095 (-)
G129793 NA non-coding downstream 311025 1669624 ~ 1672776 (-)
G129772 LOC107565238,LOC107717719,LOC107563205,LOC107700642 non-coding downstream 368836 1613941 ~ 1614965 (-)
G129770 LOC107700642,LOC107717719,LOC107565238,LOC107563205 non-coding downstream 371562 1608103 ~ 1612239 (-)
G129750 NA non-coding downstream 398382 1584071 ~ 1585419 (-)
LOC122324022 NA non-coding upstream 19385 2006574 ~ 2012208 (-)
G129876 NA non-coding upstream 39048 2026237 ~ 2027202 (-)
G129887 NA non-coding upstream 95045 2082234 ~ 2082742 (-)
G129889 NA non-coding upstream 115514 2102703 ~ 2103104 (-)
LOC122323752 NA non-coding upstream 135497 2122686 ~ 2129112 (-)
G129738 NA other downstream 484395 1498688 ~ 1499406 (-)
pef1 pef1,LOC107664714,LOC107726139,LOC107698987,LOC107712637 other downstream 696595 1281539 ~ 1287206 (-)
smim12 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other downstream 703292 1278912 ~ 1280509 (-)
LOC122323272 NA other downstream 888898 1072151 ~ 1094903 (-)
thsd7aa NA other downstream 931677 1017155 ~ 1052124 (-)
LOC122323398 pkib,LOC107098269 other upstream 752815 2740004 ~ 2751570 (-)
G130000 NA other upstream 838155 2825344 ~ 2832956 (-)
G130041 LOC107687396,LOC107708727,LOC107595896 other upstream 921300 2908489 ~ 2911603 (-)
G130083 LOC103461248,LOC102786159 other upstream 1161965 3149154 ~ 3149789 (-)
LOC122323345 fam46bb,LOC107712594,LOC107700817,LOC107737782,LOC108413340,LOC103370123 other upstream 1326200 3313389 ~ 3323828 (-)

Expression


Co-expression Network