zgc:110239 (zgc:110239,LOC107669544,LOC107706177,LOC107593550,LOC107696586,LOC107591612)


Basic Information

Item Value
gene id zgc:110239
gene name zgc:110239,LOC107669544,LOC107706177,LOC107593550,LOC107696586,LOC107591612
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 13114214 ~ 13117877 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217498.1
TCCCTCCTTCCCGTGTTTTTATTGGAACTTTCTGCTACGGCGCGTCGTCTTTCGGCGTCAACACTCACGATAAACGTTTCTTGTTTGCTTTCGGGACGCTTTTTTTAAACCATCTCCTGTGGATGTCTGTCCGGTGTCTTTAGGTTAAGCTATGTGGCTTCTTCTGGCTGGGTTAGTGCTGCTGGTGTGTGCTGCAGATGCTACACCGGTTGGTGGCAGAACAGTTCCTGATTTTGGAAAGCTATATCATGTTAAagGTCTGCTTTCTTTGCCTTATGCCGAGATAAAGGAGCCATTTGAAGCTTGGTATGACCTCAAGGGCAACAGAAGTCGAGTCGACTTTTATCACGGTACAGTCAGCACTTTTTTTATTGGAAATGACTTGGATTATGGTGCCACTTACAAGATCACTCCAGTCACCACTGAGACTGAATTCAATACTATGAAGTGTTTCCAGCTTAATGGTACCAAGCAGGATCCGATACTTCCACAGTCAGCATTGCCTGATCTGCAGGGCTTTGAATTCGAAAAGATGGAGTATTACGCAGGCGTCCTGTGTGAGGTCTGGAAAAATATCACTCAGGTTGGCCATAAGAAGAACACGTATCGTCTGTGGGTCACACGTCCAGAGGGAAGGGATTCCCCAGCCACCCCACACCACTATGAGATGATGGGCTTCAACACCCTGCTGGGGTCCCACTATGATAAATATCTTATCGACTACAGTGACTTCAGCCCTCAGATTGATTCAGACATTTTCAAACTGCCTGAAGGGATGGCCTGTGGTGACTTTCCTGGTCCTGGTCTGGAGCATCATTTATTGGCCAACCCCATCCAAGACCTTGTCCATACCTCCCCCGTTGGTCACGCTCACCGTATGTTCGGCCACTTTAAGGAGAAGTATGAGCGtcaatatgaaaatgaaaaagagcaTGAGGAGCGTGAACACAACTTTGTTCATAATATTCGGTATGTGCACTCTATGAATAGAGCGCGtctttctttttccctctctATCAATCACCTGGCTGATCGGTCACAGGAAGAGCTGGCCATGATGAGAGGACGTAAAAGGACTCATGTTCACAGAAAGGCTCAGCCTTTTCCCTCTGAAATCCGCTCTATAGCCACCCCTGACTCCATAGACTGGAGGCTGTatgGTGCTGTGACACCAGTGAAAGACCAGGCTGTGTGTGGATCCTGCTGGAGCTTTGCCACGACTGGAACAGTAGAGGGAGCACTTTTCCTGAAGACGGGACAGCTGACGTCATTGTCCCAGCAGATGCTGGTCGACTGTACGTGGGGATTTGGGAATAATGGTTGTGATGGAGGAGAGGAATGGAGAGCTTTTGAGTGGATGATGAAACATGGTGGCATTTCTACCGCTGAGAGCTATGGAGGGTATATGGGCATGAATGGTTTGTGTCATTATGATAAGTCCTCCATGGTGGCGAAGTTGAGTGGTTACACTAATGTGACCAGCGGTGATATTGAGGCACTGAAGGCCACTATCTTCAAATTCGGCCCTGCAGCTGTCAGCATTGATGCTGCTCATCGTTCCTTTGCCTTCTACAGCAATGGAGTGTATTACGAACCAGCATGCAAAAATGGGACTGATGACTTGGACCATGCTGTGCTTGCAGTTGGTTATGGgatcataaataataatcccTATTGGCTAGTGAAGAACTCCTGGTCCACTTACTGGGGTAATGATGGTTACATACTGATGTCCATGAAAGACAACAACTGTGGTGTGGCCACTGATGCTACTTACGTGACATTAGTCTAATATACTCACATCCTTCAAAGAAATAACAGCCAACAAGTTGACAGAAGAATTGTTTTCACTGATTTTATTGCAGATGCTGGACAGTTGATCACAGTTTTATTGTGTATCAGTTGGAAtgtcaataaaagaaaaagtcttAATAACAAAA

Function

symbol description
zgc:110239 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome. Is expressed in several structures, including optic vesicle; pigment cell; retina; vasculature; and yolk syncytial layer.

NR:

description
digestive cysteine proteinase 1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217498.1 True 1940 mRNA 0.46 11 13114214 13117877

Neighbor

gene id symbol gene type direction distance location
psmb4 psmb4,LOC107593590,LOC107706179,LOC107669568,LOC107591614,LOC107731773,LOC107696528 coding downstream 11229 13099675 ~ 13102985 (-)
zgc:153441 zgc:153441,LOC107706178,LOC107591613,LOC107696589,LOC108426183 coding downstream 24784 13086560 ~ 13089430 (-)
vps45 vps45,LOC107706151,LOC107591611,LOC107593545,LOC107731364,LOC107670145,LOC107696588,LOC103374652 coding downstream 28197 13080049 ~ 13086017 (-)
plekho1a plekho1a,LOC107669580,LOC107706150,LOC107593546,LOC107696529,LOC107591669 coding downstream 36817 13066508 ~ 13077397 (-)
si:ch211-191i18.2 NA coding downstream 69782 13034497 ~ 13044432 (-)
LOC122323573 LOC107696587,LOC107731336,LOC107591615,LOC107696584,LOC107552275 coding upstream 1435 13119312 ~ 13124815 (-)
sytl1 sytl1,LOC107706182 coding upstream 8289 13126166 ~ 13131495 (-)
fkbp9 fkbp9,LOC107669520,LOC107706181,LOC107591616,LOC107742858,LOC107593552,LOC108257175 coding upstream 14595 13132472 ~ 13138628 (-)
susd5 LOC107706153,LOC107670128,LOC107593553,LOC107742875,LOC107591670,LOC107696526,LOC107706128 coding upstream 25912 13143789 ~ 13154222 (-)
cyhr1 cyhr1,LOC107706189,LOC107591623,LOC107742848,LOC107696565,LOC107669346 coding upstream 138838 13256715 ~ 13263424 (-)
G132675 NA non-coding downstream 7081 13106913 ~ 13107133 (-)
G132674 LOC107670044,LOC107706180,LOC107593577 non-coding downstream 8623 13104879 ~ 13105591 (-)
G132665 NA non-coding downstream 54904 13054785 ~ 13059310 (-)
G132664 NA non-coding downstream 67591 13046373 ~ 13046623 (-)
G132662 NA non-coding downstream 82088 13031837 ~ 13032126 (-)
G132682 NA non-coding upstream 25426 13143303 ~ 13143621 (-)
G132709 NA non-coding upstream 120812 13238689 ~ 13328384 (-)
G132726 LOC107696582,LOC107591653,LOC107742849,LOC107669332,LOC107706187,LOC107593556 non-coding upstream 136959 13254836 ~ 13256019 (-)
G132729 NA non-coding upstream 156086 13273963 ~ 13276574 (-)
G132695 NA non-coding upstream 185223 13303100 ~ 13336775 (-)
cart4 cart4,LOC107706148,LOC107591606,LOC107593588,LOC107731457,LOC107696592,LOC107670162 other downstream 84865 13027817 ~ 13029349 (-)
sem1 NA other downstream 444999 12597774 ~ 12669215 (-)
bet1 bet1,LOC107669829,LOC107722155,LOC107731720 other downstream 676129 12435779 ~ 12438085 (-)
G132292 NA other downstream 1281307 11832173 ~ 11832907 (-)
LOC122323871 ctnnal1,LOC107724361,LOC107670281,LOC107653856,LOC107710384 other downstream 1357776 11709923 ~ 11756438 (-)
G132733 NA other upstream 166654 13284531 ~ 13285461 (-)
G132784 eef1a1l1,eef1a1l2,LOC107742828,LOC100526699,LOC107696583,LOC107589443,LOC107706208,LOC107654700,LOC107696561,LOC102296947,LOC101482897,LOC102205261,LOC108247920,LOC107706209,LOC107589444,LOC107654701,LOC108426655,LOC108256978,LOC107591637,LOC107742829,LOC105892153,LOC108426629 other upstream 376953 13494830 ~ 13502370 (-)
G132785 NA other upstream 389787 13507664 ~ 13508453 (-)
G133132 NA other upstream 1666311 14784188 ~ 14784423 (-)
zgc:114119 LOC107654731,LOC107688423,LOC107706242,LOC107754290,LOC107592983 other upstream 1769651 14887528 ~ 14891918 (-)

Expression


Co-expression Network