chrac1 (chrac1,LOC107580926,LOC107591666,LOC107669723,LOC107722130)


Basic Information

Item Value
gene id chrac1
gene name chrac1,LOC107580926,LOC107591666,LOC107669723,LOC107722130
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12726512 ~ 12727814 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217500.1
TTTGAAAGTCTGTAGATTTACTTCCGTTACGCGGCTGGTGCTAACAGAATAGAACATGTCTGAAAAAAACATGGAGGAAAAAGTTGAGAATGCtacaaacactaaaaatatatcTCTGCCCATGTCGAGGGTGCGATTAATCATGAAAAGTTCTCCCGATGTGTCCTGTATTAACCAGGACGCTCTTTTCTTGACAACAAAAGCAACGGAGCTTTTTGTCCAGCACTTGGCTCTGTCCTCATATAAAAATGGTTCGGGTCAAGAGACAAACACGCTGTCGTACAGGGACCTGGCCAACACAGCAGAGGAGACGGAAACGTTTCAGTTTTTAACCGATATCCTTCCTAAGAAAATCTTGGCCAGGGACTATCTGAAGTCGCTGGAAGACATGGAAAAAGACGATGATGTCTGAGGAAATCACTGTGAACTGATCCTGACCACTTCCTCGCTAAAACTGTGGATTAAACTCGCAGGACATTGTCTCACAAATCAGGACATTTCACCCAAAGAGTTGTACTAATACACCTCTGTTGTTTTAGAGAGGTAATGTACATGTTTTACTTAATGtagtctgtgtgttttaggACCCACTTACACTATGCGTTgtgttaaaatgtcaaaatagcCGCTACACTGAATTCTCAACTGAACCACTGTGAGACCAGGTTATATGGTGTTTTATTACTGCTTGATTGAATCTGTATGTTTAGGGAAGATCCATACATCTGTGCAGTCCATTCCATTCAATGTGAAATCAGACCTTGCTCACGTCTTCAAATTGAAAATGCTTTTCTCAgggtttaaaatgtatgtttcgTGGCCACGCTTTAACATTTTAACCACTGAGGATAAAAATGCCTTTAATTCATACTTGACTCTGGGCTGTAGCTGAAGATTTATATAGCGTACTGTATCGTTTTTAAATGCTTGAACAGTCttaattttgtatttgaataaatactttTGCTGA

Function

symbol description
chrac1 Predicted to enable protein heterodimerization activity. Acts upstream of or within primitive erythrocyte differentiation. Predicted to be part of CHRAC. Predicted to be active in nucleus. Orthologous to human CHRAC1 (chromatin accessibility complex subunit 1).

NR:

description
PREDICTED: chromatin accessibility complex protein 1

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11656 CHRAC1, CHRAC15; chromatin accessibility complex protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217500.1 True 970 mRNA 0.40 3 12726512 12727814

Neighbor

gene id symbol gene type direction distance location
dlx5a dlx5,dlx5a,LOC107670186,LOC107591663,LOC107665662,LOC107736572 coding downstream 20865 12703592 ~ 12705647 (-)
LOC122323727 slc25a13,LOC107665658,LOC107593530,LOC107731765 coding downstream 69355 12619783 ~ 12657157 (-)
pdk4 pdk4,LOC107722149,LOC107669734,LOC107591595 coding downstream 158009 12558911 ~ 12568503 (-)
sgce sgce,LOC107731676,LOC107722147,LOC107665667,LOC107669779 coding downstream 217907 12497228 ~ 12508605 (-)
tfpi2 tfpi2,LOC107722157,LOC107670228,LOC107731825,LOC107667768,LOC107558578 coding downstream 303393 12420878 ~ 12423119 (-)
gnrhr1 LOC107722165,LOC107593587,LOC107670170,LOC107731798,LOC107591668,LOC107665657 coding upstream 51237 12779051 ~ 12786005 (-)
trioa LOC107696598,LOC107706171 coding upstream 135011 12862825 ~ 12942047 (-)
si:ch211-191i18.4 NA coding upstream 298282 13026096 ~ 13027361 (-)
si:ch211-191i18.2 NA coding upstream 306683 13034497 ~ 13044432 (-)
plekho1a plekho1a,LOC107669580,LOC107706150,LOC107593546,LOC107696529,LOC107591669 coding upstream 338694 13066508 ~ 13077397 (-)
G132603 dlx6,LOC107591662,LOC107665660,LOC107665661,LOC107670195,LOC107731755 non-coding downstream 4084 12699922 ~ 12722428 (-)
G132602 NA non-coding downstream 25434 12687803 ~ 12701078 (-)
G132579 NA non-coding downstream 145695 12577995 ~ 12580817 (-)
G132580 NA non-coding downstream 152971 12570941 ~ 12573541 (-)
G132455 NA non-coding downstream 169867 12556258 ~ 12556645 (-)
G132627 NA non-coding upstream 63743 12791557 ~ 12829799 (-)
G132637 NA non-coding upstream 127240 12855054 ~ 12857406 (-)
G132642 NA non-coding upstream 132402 12860216 ~ 12930455 (-)
G132645 NA non-coding upstream 242732 12970546 ~ 12984432 (-)
G132662 NA non-coding upstream 304023 13031837 ~ 13032126 (-)
sem1 NA other downstream 57297 12597774 ~ 12669215 (-)
bet1 bet1,LOC107669829,LOC107722155,LOC107731720 other downstream 288427 12435779 ~ 12438085 (-)
G132292 NA other downstream 893605 11832173 ~ 11832907 (-)
LOC122323871 ctnnal1,LOC107724361,LOC107670281,LOC107653856,LOC107710384 other downstream 970074 11709923 ~ 11756438 (-)
G132219 LOC105418166,LOC101068103,LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 1555599 11170270 ~ 11170913 (-)
cart4 cart4,LOC107706148,LOC107591606,LOC107593588,LOC107731457,LOC107696592,LOC107670162 other upstream 300003 13027817 ~ 13029349 (-)
G132733 NA other upstream 556717 13284531 ~ 13285461 (-)
G132784 eef1a1l1,eef1a1l2,LOC107742828,LOC100526699,LOC107696583,LOC107589443,LOC107706208,LOC107654700,LOC107696561,LOC102296947,LOC101482897,LOC102205261,LOC108247920,LOC107706209,LOC107589444,LOC107654701,LOC108426655,LOC108256978,LOC107591637,LOC107742829,LOC105892153,LOC108426629 other upstream 767016 13494830 ~ 13502370 (-)
G132785 NA other upstream 779850 13507664 ~ 13508453 (-)
G133132 NA other upstream 2056374 14784188 ~ 14784423 (-)

Expression


Co-expression Network