jarid2b (jarid2b,LOC107754814,LOC107694367,LOC107702394,LOC107731546)


Basic Information

Item Value
gene id jarid2b
gene name jarid2b,LOC107754814,LOC107694367,LOC107702394,LOC107731546
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6061549 ~ 6162543 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217546.1
AATATATGTCGAttctaaaatgttctgtaaGAATTAGTCCACAGTGATTAAATGTGAATACAGGCCTACTGTTAAGAACTACACCGCGTGCTTCTTTTCCCCCACGTCGAACACAAACATTTCTAGAGAGCAGATGACTATCTTAACAAGGGACGCGGTGAGATTTCGCAACGCTACTCAAAACTGCCTACAAACAAAAAGCGCCTCTGCAAACTGTCCCGAGGCCCCCGTTGAGTTGGAAACCATTCGACGTCTCTTCCCTTTTCGTCCCGAATCGCCCGTTCTTTCGTTCGCCAACTCGGAGGCGTTGTTCGTTTCGGCGTCCCTTCGAGCAGGGTGGTTTCGCGACGCTCCCTAAGGCCGGAGTCCTTTTAAAGTTACCGCTGAGCGTGCTGTCGGGTGTGATAGGCTGCTTAAAGAAAGAAGCTTCGCCTTGTGTTCAGATGAGCCCGTGGTGCTGCTGGAGAGTTCACTCACCGTCTGCTAGCTCCAGCCAAAACGGACCACGAacccttttcctttttttacgttttatttatttcatgctatcCTCAGATACGCCTTTTCAAAACAAGATGTAACTCAACACCGAACATTTGCATCCTCACTTGAATGAACAGGCGCGTTTTAAAGAGCCGGGATGAACATCACTGATGGAAGTTATTGTGGCGAATGGTTTTAACTATGGTATGCCGATGTGATTGTTTATTTTGCCCTTTACCCTCGGCGGCGGATCCCTGATTTTTGGGATTATCGGTAATTCCGCGACTCTGCTAGGAATCGTCGGCGATCGAACGGGGAATTCTGCACGGCCAGGCAAACTACAGGGGATTTAAATCGCATTGCTCcgggagaagaagagagaaaagcagGAAGAAAATTCATGTGGCGATTCTCTCCttaacaataaatcattttttggaTTGCAGAATGAGCAAGGAAAGACCTAAGAGGAATATCATTCAGAAGAAATACGATGATAATGATGGGATGCCCTGGTCGGAGGAGCGGGTGGTGCGGAAGGTGCTCTATCTCTCGCTGAAGGAGTTCAAGAGCGCTCAGAAACGCCAGCTCTGTGACGATCTCAGCAATGGAGGAAAAGGGCCCAATGCTTCCTTGTCAAACGGGCAGCTGAATGGATGTGGGTCTAAAGGAGGACGTAAAGAGAACGGGTCTTGCTCTCAGAGCACAGATGGAAGCAGCGAGTACTCTGAGGACTGCCCGGCCAAAAAGAGGCCCAGACTGCATGCACAGAGGAAGTTTGCTCAGTCTCAACCCAACTCTCCCAGCACCACGCCGGTGAAGATGGCCGACCCCTCTCTGCCCACGCCGCTCACACATGTCACATTCCTCTCCAGTCGCAAGCCCAAGACAGAAGACTTCCTCACATTCATATGCCTTCGAGgcTCACCGGCATTACCCAGTAACATGGCCTACTTCGGCTGCTCTCAGGACGGGGAGGATCTggaagatgaagaggaaatTGAGGAAGAGAAACCACCCAGTGTGGCTTCTACGTCGTGCCAGTCTACACCCAAGAAGGGCAAACCGCATGGCAAGATTAACGGATTCGTGTTGAACGGCCTTAAGGTACACAAGGACAAAGAGCTGGCTCCCAGATCCAGGGGCAGAGAGTCATCCGTGGGGAGAGAGTGTAACGAGGGCTGTGACGCTGCTGAGATCTCCCACAAGCACACTGCAGCCACGGCAAAGAGCCACAACACCAACGGCCACAACTACAGACGAGCCGCAGAAGAGCTCCGCAAGCAGGTCTCGAAAGTAAATGGACTCACACGGGCATCATCAGTCGGCACGCATACAGCCAGTGCCAAAAAGTCGAAAGACTTCCGTCTGCCGTCCAAAACTGTGAAGTACACAGCCACCGTGACCAAGGGCCACGTCACCTACACCAAAGCAAAACGAGAACTGGTTAAGAAAGCCAAACTCAACCACAGCAAGCACGCTTCTTCTGCTGGCCTCCGTGCTTACAGCAACAACCACCTCCATCATTCTCATCATCCAACCAGCAATGGCCATGGCCGGCCCCAGCTCTCTCACTCAGGAAAAGCCCAAAGTATCAATGCAAAAACCCGCAAACAGGTGCTATTATCGAACGGGGTGCATAAGATGACTAATGGGGGCCGGCCTAATGGCAGGCTTAATGGACGCCACAGTGCCagggaagaggaggaagatggCCGACAAGTGCGGCAGGGACTGCGGAACTCTAAACGCAGGAGTGATGCCATTACGATCCTTGGAGCTGGAGCCGAGAGGGACGAAATTAAAACTAAGCCGCCTGTTACTGAGGTTAAGAAAGCTAAACTGCATACTAGCCCACTGGAAACTCGCAGCAAGAAGGCTCTGGGTCAGTTCAAGTCCCCCAACACGATTGCACACAGTATCACTGAAATGGCCGCTTCCCCGACTCAGAAAATGGGTCCTGCCCCTCCTCCTTCACCCCCTGCTGCTCCTGCCTCCCCATCCATGCCCCAGAACCCCGCTACCCCTGAACCAGCACGTCAGAGGCCCAAACGTGCCTCTGCTGGCAAACTGATGTTCATCAGACAAGCACAGCAGAGGGCCCAAACTAACCCCGCCCTCAACCGGACCACATCCACTACCTCAGCCAGCAAATCCTTCAAACCAGCagaccccacacacacacctccacccCGGCCAGACAGAGACAGGGAGCGGGAGAGGAGAAGGGCAGGGTGCGCGGCCCTGGGGGATGTGCCCTTTTTCAAACCCACCTCCAGGGAGTTTCAGGACCCTTTGGTGTACCTCGACTCAGTTCGCGAGCGGGCCGAGTCGTCTGGACTGTGCAGAGTGTTGCCGCCTCCTGACTGGAGGCCAGAGTGCAAACTCAATGACGATATGCGTTTTGTGACACAGGTTCAGCGCATCCACAAGGTGGGTCGGCGCTGGGGCCCCAATGTTCAGAAACTGGCCTGCATTAAGAAGCACCTCAAATCTCAGGGCATCTCGATGGATGAGCCACCGCTTATAGGTGGCTGTGAAGTAGATCTGGCTCGTTTTTCCGAGCTGGTCTGCGACATGGGTGGAATGCAGCAGGTGATGGACCTGAAAAAATGGAGCCGGTTGGCTGACCTGCTTCGCATTCCCAAATCAGCACAGGACCGTCTGGCCAAGCTCCAGGAGGCCTACCTTCAATACCTGCTCTCCTATGACCTGCTCTCCCCAGAGGAGCACCGGCGACTGGAGCAGGAGGTGCTGGCAGAGAAGGAAGCTCTGGAACGCAAGCGGGGACCCCTGGAGGGCCACTCGGATAATGGCCAGCGGTCTCTGGCTCTTCCCCGTTACGAACCCAAGAATGGGCTCACCGGCCTCCACCACCGCAATGGCTTCCGCAATCACAACAAAGAGCCAGACACCCAGCGGCAGGCCGGCCGCCGCAGACTGTTTGCTCAGGAAAAGAAAGGGGAAAAAGTGGACAATGATGAGGCAGATGTGGAGACAGAAGATGAAGGTGTTCTCAGTGACCAGCACAAATGTATATACAAGgGGAGATCGGTATCTTTGACCACCTTTTACAGGATAGCAAGAAATACTATGATGATGTGCTTCAACAAAGAGCCTGGGGCTGCTGAAGTTGAGCAAGATTATTGGCGGATAGTGGAGCAGAGAGACTGCCACGTagcagtgcattatgggaaagtggacacaaacacacatggaaGCGGCTTCCCTGTGGGCAAGTCTGAACCCTTTTCCAAGCATGGATGGAATCTCACTGTCCTTCCCAATAACTCTGGATCCATTCTGCGCCATCTTGGTGCTGTGCCTGGGGTGACTATTCCCTGGCTGAACATCGGCATGGTCTTTTCTACCTCATGCTGGTCACAAGACCAAAACCGCCTTCCATACATTGATTACTTACACACTGGTGCTGATTGCATTTGGTATTCTATTCCTGCTGAGGAAAAGACAAAGCTTGACAAAGTGGTGCACACACTGCTACAAGCCAACGGCACGCCGGGACTGGAAATGCTGGAGAAGAACGTTATGATTTCTCCAGAGGTGCTTTGTCGTGAGGGGATCAAGGTCCACCGCACGGTCCAGCAGAGCGGGCAGTTTGTGGTGGTCTTCCCCGGGGCGTTCGTGTCCAGGGTGTGCTGCGGCTACAGCGTGTCTGAAACTGTGCACTTTGCCACACCACAGTGGATGAACCTGGGCTACGAGGCTGCTAAGGACCTGAAATACAGGCATATAGCAAAACCCTTCTCTATGGAGAAGCTGCTCTACCAGATCGCCACAGCCGAGGCCAAACGAGAAAACAGACTTGTGCTCAGTACAATCTCTTCTCTTCTCAAAGATCTCAGGAACATAGAGATGAAGCAAAGGCAGGATCTGTATGAAGCAGGGCTGCTCTCCTCCGCACGCTACTGCACTCACGACAACAACCAGTCACCCGCTGACACCAGGAAGAAACCCCGCAAGTGGCTGGCGCTGGAGTCGTCCGAGAGACGCTGCCAAACGTGTCAGCACCTCTGCTACTTATCTATGGTGGTGCAGGAGAATGAAAATGTGGTTTTCTGTCTGGAGTGCGCGCTGCAGTATGTGGAGAAACACAAAAGCTGCCGCGGCCTCAAGATGATGTACCGCTATGATGAGGAGCAGATCAACAGTTTGGTGAATCAGGTCTGTGGTAAAGCCCTGGTGAGAAGCCCGGCGGACGGCTGTAACGGCTCCAGCCCCACCAAACCGCCCGCCAAGCGCGGCCCCCGCAAGAGAGCCGGCGTGGAGCTGTCCCTGACCCACCTGTCCAAAAGTGCCGCCGCCGTCTCATGAGGAGCGCCGCCCAGTCCGTGTCCTCTCCCTCTCTTCGTATCGTTCGTGTCTTTTATCACCCACATAGCAGGGCAGAGTTTTCCGTGTTGAAAGCAGGCTGCCTTTTTTGCACTAGCGCACTAGTTTGTATTCACCAGATGTTTGATAGCATTAAGAGACGCGGTCCCAGGCGTGCGTTTCACTGACGGGTGCGAGTCTGACGTCATCTTCTTCTGTCCGGACCCTCTTCCTCCTCGTCCTCGGCCCCCTCGACTGCACACGCGCTCCTCCCGAACTGTGAACCTTGGGACAAATGGGTGCTCCTCTCCCCGTTTCTCCAGACCCCTTTCCTTTGAATGTTGGTGCTCGGTGGAGCTGCCcgagaatgttttattttcgtTTCGTTTTTTGTTCATCGCATCGTTTCGGCGTTTGCTTTTAGCCAAGCGATTTGTTATATTTCGGCTCTTTTTAGTTTTGGCGTTCCGTTTGGCTTCACGGCGACACCTTTTGGTTTCCGTTTGGTCAGCATGCGGAAGACGCGTCTCGAAAGACGGCGAACACTTGAACAATTTTAGCTCGTTTTAATAtcgatttagttttttattcaaGAGGAAGTACGGTGGGTTTTTAGTGCACGCTGTCCTCTGCGGATTCGGGCCGGTTTCCATGGCAGCGGGTCGGGCTGTACTTGAGGAAGTGGGTGTTGGGGAATGAATTAGCGGGTCCTGTCCCGGCGGTGAGGGGCGTCCCTCCCACGCCGACGCTTACGAGCGATACCTGTGCCTGATGTTTAACGGGGAGATCTTTCTTTATTTCggtgctgttgtttttgttttctttttgttttactgtatatcagtgcaaaaaaaaaaaggtaataagaAAGAAGAGCTGCTCGCTGGCCTTCTTATCCCACAGGACGGAAGAGCCCAGAGGCTTTTTCCGCTTCTAGATGTGCAATCGTGTCAACATTCCATTCTTCCAGACTTATTGATTCATCTGTACcagttaacattaattattatataatattattgtaattattatattttgtttctcCTCTTTTGTTTCCGACGTGCTATCTCAATTTAGAGCCACTATTCAGAGGGTGTAAAATgtgaaagttgttttttttttcttcttcgttGTTTCTTTTCGTTccgtcttttttttctttttgcagaaGTATCATCGACTTAAAGAAACTTAAGAAAATCACCTTTTTGTACATAAcctgtaaatgtctttaatacTTGAGCCTTTGTTGGAGTGACGGAAGGAAAGGATAGGTGGATAGATGGACGATGTCAGATGAAGAAAAGCCTTACATTTCAGTTTCTTCAGCTGCGGGAGGTCGATGCGTACAGGGTCGCTCTGGTAATGTGTATAAATTTTAAGTGCTGCTTACATCACTGAGGACTAAGAGAACGGAGTCGCGATTTGCccctagttttgttttttaggtttacttttttaaagaaaagggaaaatactttcacaaaaaaaaacaaaaaaaaaaaaaaggtttttacattttcattactgaAAATTCAACATTGTAGTAGCTACTCATGTTGCACTGAGCTTGCCAGTGGTGACtgtcaaggaaaaaaaaaaaaaactataatccAGTTTGTTGGTTGTCGTCCTTAACAGAAGACTGAACTGTTTTAGGAGTATTTAATGAAAACCAAGTCAGGTGTTTTCAACAAAACGGCGGTTGTCAAGTTTTTATGGCCTTAGgatgtattttattcagaaattgtGTTGTTTCTGTTCCTTTTTCTACAATATGAGAGATCTGCTCACGGTCAGGCGAGTTAATTTATTAGCTTTTCCTCTCTTGAGGAAAGATTTCATGTTGGTTATATTGCCaggtttattttggtttttcttttggttttttactttttcaatttGTACTTAAGGTTTAATAAAAACTCATGGACAATTCGC

Function

symbol description
jarid2b Predicted to enable chromatin binding activity and histone demethylase activity. Predicted to be involved in several processes, including chromatin remodeling; negative regulation of transcription, DNA-templated; and regulation of histone methylation. Predicted to act upstream of or within cell differentiation and chromatin organization. Predicted to be part of histone methyltransferase complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human JARID2 (jumonji and AT-rich interaction domain containing 2).

NR:

description
PREDICTED: protein Jumonji isoform X2

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0031061 negative regulation of histone methylation biological_process
GO:0048863 stem cell differentiation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0051574 positive regulation of histone H3-K9 methylation biological_process
GO:0035098 ESC/E(Z) complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0032452 histone demethylase activity molecular_function

KEGG:

id description
K11478 JARID2, JMJ; protein Jumonji

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217546.1 True 6753 mRNA 0.50 18 6061549 6162543

Neighbor

gene id symbol gene type direction distance location
LOC122323385 sdhaf3,LOC107702681 coding upstream 178575 5876050 ~ 5882974 (+)
col28a1a col28a1,LOC107754784 coding upstream 322364 5725368 ~ 5739185 (+)
rpa3 rpa3,LOC107754810,LOC107598208,LOC107672835,LOC107731561,LOC107702426,LOC107568286 coding upstream 343868 5716696 ~ 5717681 (+)
LOC122323266 NA coding upstream 447419 5613068 ~ 5614130 (+)
LOC122323836 LOC107598234 coding upstream 490278 5569730 ~ 5571271 (+)
mylipa mylipa,LOC107754815,LOC107694366,LOC107584315,LOC107731572 coding downstream 71482 6234025 ~ 6252339 (+)
npr1a npr1a,npr1,LOC107694365,LOC107677481,LOC107754786,LOC107731544,LOC108435512 coding downstream 103840 6266383 ~ 6344260 (+)
ints3 ints3,LOC107754816,LOC107584314,LOC107731564,LOC107694364,LOC107677482 coding downstream 184246 6346789 ~ 6361192 (+)
gon4la LOC107754817,LOC107694363,LOC107584344 coding downstream 202975 6365518 ~ 6377599 (+)
LOC122323487 LOC107694355,LOC107754822,LOC107595588,LOC107711322 coding downstream 272689 6435232 ~ 6443128 (+)
G130893 NA non-coding upstream 108079 5923032 ~ 5953470 (+)
G130899 NA non-coding upstream 126832 5798511 ~ 5934717 (+)
G130891 asns,LOC107754811,LOC107672863,LOC107731557,LOC107702657 non-coding upstream 128707 5930852 ~ 5932842 (+)
G130890 LOC107731557,LOC107702657,LOC107568288 non-coding upstream 136578 5788566 ~ 5924971 (+)
G130861 NA non-coding upstream 386705 5674295 ~ 5674844 (+)
G130940 NA non-coding downstream 5083 6167626 ~ 6169359 (+)
G130944 NA non-coding downstream 65203 6227746 ~ 6228087 (+)
LOC122324219 NA non-coding downstream 92463 6255006 ~ 6263954 (+)
G130950 NA non-coding downstream 169122 6331665 ~ 6334244 (+)
G131010 NA non-coding downstream 230373 6392916 ~ 6393957 (+)
LOC122323983 tac1,LOC107702667,LOC107731560,LOC107754813,LOC107672864 other upstream 138576 5785130 ~ 5922973 (+)
LOC122323254 sdhaf3,LOC107702681 other upstream 308632 5745801 ~ 5752917 (+)
LOC122324139 LOC107598234,LOC107672810 other upstream 475894 5583505 ~ 5585655 (+)
G130640 txnipa,txnip,LOC108410889,LOC107672857,LOC107738596 other upstream 747371 5223700 ~ 5314178 (+)
LOC122324077 NA other upstream 833323 5225081 ~ 5228226 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other downstream 209292 6371835 ~ 6401298 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other downstream 300540 6463083 ~ 6488760 (+)
G131042 gabbr1b,LOC107595614,LOC107677456,LOC107584305 other downstream 357377 6519920 ~ 6526080 (+)
ppp1r11 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other downstream 529431 6691974 ~ 6696204 (+)
G131183 NA other downstream 671326 6833869 ~ 6836858 (+)

Expression


Co-expression Network