mgat1b (LOC107694344,LOC107754829,LOC107677460,LOC107711329)


Basic Information

Item Value
gene id mgat1b
gene name LOC107694344,LOC107754829,LOC107677460,LOC107711329
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6660812 ~ 6670386 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217553.1
GCGCGAAGGGGGCGGGTCCTACTTAATGAGTCAATCCGGAAGTGGGGAATCGCTCTGCctgtacgcacacacacacacagacacacagagcgGCAGCGGCGTCAAATCAAGCCCTCGGTCAGCGCGTAACTGTAAATACAGCCGTTAAAACAAGCGTCCGGAACCGCGCGCTCTCACTTCGCCAGCCGATATCGCCGCAGACAGCACCGGATGTGAACCGCGGGCACACACGGGGAGAGAGGGAAATGGGCGACAGCTGCAGGAATGGAGAGAGTCGAGTATTGACAGCAGCGCCGGGCGAAGGCGACCGACGGTGATGGAGATGAAGAGCGAAAAGTGAAGCTCTCGTTCTGACGGTCTGCATCTCGTCGGTCACGGCCATCTCGCTGTTTAACCCCGTCCTGTCCGGAGATGATGAAAGCATTTTCCTCCCTGCGGTCCCTTGTGTGGTGTCACTGGACCATGGTTCGCAAGAAAGGATCTCTTATATTGTGTGGAGCATTTCTATTTGTTGCCTGGAACGCCTTGCTGCTGCTCTTCTTATGGGGAAGGCCTCCCATTGGCCGACTTGGTGAGGGAGGCGGAGCTGAACCAGGGGCTGGAGAGGAGTGGGGAGGCGGAAAAGCAAAAGTGGGTGGAGCTAATGGATTGGCTGGCGAAGTGATCAGATTGGCCGAAGAAGTAGAATCAGAACTGGAGACTCAGAAGAAGCTTCTCAAACAGATACAGAGTCACAGGGAACTATGGGAACAGCGGAAAGAACTCGGAAAGAGGGAATCCGAGGACATAAAAAAAGACGAAAAGAACGTTGAGGAGCCTAAGAAACCTCAGCAGATTCCGGCAATACCTATAAGTCAAAAAATTGTAGATGAAGCAAAAATTGTTACAGAAAAACATGAGGTTCTAATAGTTACGCCACCTAAGCTGGTCatgaaggagcaggagaaggaGCAGGAACAGGAACAAGAGGACAAGAAAATGGCAGAAAATGAAGAAGGCCATACTAAACCAAGCCCTCAAATCATTATCCCAATTCTCGTCATTGCCTGTGACAGAGTAACGGTGAAGAGAAGTTTGGATAAACTCATACAGTACCGTCCTTCTGCTGAGCTTCACCCAATCATTGTCAGCCAGGACTGTGGTCATGCAGATACGGCAAGGGTGATTGGCTCCTATGGCAGTCAGATAACCCACATTAGCCAACCGGATCTTGCGGACATTCCAGTGCGACCCGATCACAGGAAGTTCCAGGGTTACTACAAGATCGCCAGGCACTACCGTTGGGCCCTGAACCAAGTGTTCAACGTCTTTGCTTACTCCACAGTGGTCATTGTGGAGGATGACCTGGAGGTGGCCCCAGACTTTTTTGAGTATTTCCGCGCGCTCTACCCCATCTTGCGATCGGATCCTAGTCTGTGGTGCATTTCTGCCTGGAATGATAACGGACGGGATGGGTTGGTCGACCCAGGCAGAGCTGACCTCCTTTACCGGACAGATTTCTTCCCCGGCCTCGGATGGATGCTTTTAAAGGAAGTCTGGGCAGAGCTGGAGCCCAAGTGGCCCAAGGCATTCTGGGACGACTGGATGCGGCACCCAGAGCAGCGGAAGGACCGCTCATGCATTCGTCCTGAGATCTCCAGGACTATAACGTTCGGGCGAAAAGGCGTCAGTTTGGGTCAATTTTTCGACCAGTATCTGCGCTACATAAAACTCAATACTGAATTCGTGCCTTTCACTAATCTGGACTTGTCCTACTTGGTCAGGGAGAAGTACGATGAAATCTTTGAAAAGGAAGTGTATAGCGCCCCCTTGGTGAAGGTGGAGGAACTGCAGCAGGGCGGGAGTCTGAAAGGCTCTGGGCCGTTTCGAGTTCAGTACTCAAGCAGAGACAGCTTTAAAGTGCTGGCCCGCAACTTGGGGGTTATGGATGATTTGAAGTCAGGGGTTCCCCGTGCCGGTTACAGGGGTGTAGTCAGCTTTATTTCCCGCGGACGAAGAATTTATCTGGCTCCCCCTCAGGGCTGGATTAAATATGACACCAGCTGGAGCTGAGGAGGATGAGCTTTGGACCACAATAGACCAGAAAGAGAAAACTCACAACTATTATTAAAAGTACAGGAGGAGAGAAACGCCCTCTCAAACCAAAGAAAACAGAGGCAGGGTGTGAAAGTTTGAGGACAGGTTAACACTAAGATGTGAGTATAAAATAACTGCTGTTTTGCTATGGAGGAACACCCAGGAATGCTGGGAACAGCACAAAAGTTGGTGCATCGTATTTGCGCAGCAATCATGCAACAATCTTCTCTCAGAGAAAACAGAGTTACGC
>XM_043217554.1
TCTTTGCATGGGTACAGTACTTCCCTCCCCTTTCCTCTCCCCTCCCCTTTGGCTCATCCGATTCTTGCTGATCAGCTCCTTGTGAACAGTTGGGGGAGAGACGTGGAAACACAGTCTTCTCCGTGTCCAGCATTTTCCTCCCTGCGGTCCCTTGTGTGGTGTCACTGGACCATGGTTCGCAAGAAAGGATCTCTTATATTGTGTGGAGCATTTCTATTTGTTGCCTGGAACGCCTTGCTGCTGCTCTTCTTATGGGGAAGGCCTCCCATTGGCCGACTTGGTGAGGGAGGCGGAGCTGAACCAGGGGCTGGAGAGGAGTGGGGAGGCGGAAAAGCAAAAGTGGGTGGAGCTAATGGATTGGCTGGCGAAGTGATCAGATTGGCCGAAGAAGTAGAATCAGAACTGGAGACTCAGAAGAAGCTTCTCAAACAGATACAGAGTCACAGGGAACTATGGGAACAGCGGAAAGAACTCGGAAAGAGGGAATCCGAGGACATAAAAAAAGACGAAAAGAACGTTGAGGAGCCTAAGAAACCTCAGCAGATTCCGGCAATACCTATAAGTCAAAAAATTGTAGATGAAGCAAAAATTGTTACAGAAAAACATGAGGTTCTAATAGTTACGCCACCTAAGCTGGTCatgaaggagcaggagaaggaGCAGGAACAGGAACAAGAGGACAAGAAAATGGCAGAAAATGAAGAAGGCCATACTAAACCAAGCCCTCAAATCATTATCCCAATTCTCGTCATTGCCTGTGACAGAGTAACGGTGAAGAGAAGTTTGGATAAACTCATACAGTACCGTCCTTCTGCTGAGCTTCACCCAATCATTGTCAGCCAGGACTGTGGTCATGCAGATACGGCAAGGGTGATTGGCTCCTATGGCAGTCAGATAACCCACATTAGCCAACCGGATCTTGCGGACATTCCAGTGCGACCCGATCACAGGAAGTTCCAGGGTTACTACAAGATCGCCAGGCACTACCGTTGGGCCCTGAACCAAGTGTTCAACGTCTTTGCTTACTCCACAGTGGTCATTGTGGAGGATGACCTGGAGGTGGCCCCAGACTTTTTTGAGTATTTCCGCGCGCTCTACCCCATCTTGCGATCGGATCCTAGTCTGTGGTGCATTTCTGCCTGGAATGATAACGGACGGGATGGGTTGGTCGACCCAGGCAGAGCTGACCTCCTTTACCGGACAGATTTCTTCCCCGGCCTCGGATGGATGCTTTTAAAGGAAGTCTGGGCAGAGCTGGAGCCCAAGTGGCCCAAGGCATTCTGGGACGACTGGATGCGGCACCCAGAGCAGCGGAAGGACCGCTCATGCATTCGTCCTGAGATCTCCAGGACTATAACGTTCGGGCGAAAAGGCGTCAGTTTGGGTCAATTTTTCGACCAGTATCTGCGCTACATAAAACTCAATACTGAATTCGTGCCTTTCACTAATCTGGACTTGTCCTACTTGGTCAGGGAGAAGTACGATGAAATCTTTGAAAAGGAAGTGTATAGCGCCCCCTTGGTGAAGGTGGAGGAACTGCAGCAGGGCGGGAGTCTGAAAGGCTCTGGGCCGTTTCGAGTTCAGTACTCAAGCAGAGACAGCTTTAAAGTGCTGGCCCGCAACTTGGGGGTTATGGATGATTTGAAGTCAGGGGTTCCCCGTGCCGGTTACAGGGGTGTAGTCAGCTTTATTTCCCGCGGACGAAGAATTTATCTGGCTCCCCCTCAGGGCTGGATTAAATATGACACCAGCTGGAGCTGAGGAGGATGAGCTTTGGACCACAATAGACCAGAAAGAGAAAACTCACAACTATTATTAAAAGTACAGGAGGAGAGAAACGCCCTCTCAAACCAAAGAAAACAGAGGCAGGGTGTGAAAGTTTGAGGACAGGTTAACACTAAGATGTGAGTATAAAATAACTGCTGTTTTGCTATGGAGGAACACCCAGGAATGCTGGGAACAGCACAAAAGTTGGTGCATCGTATTTGCGCAGCAATCATGCAACAATCTTCTCTCAGAGAAAACAGAGTTACGC
>XM_043217555.1
TGTGGAAGTGTTAGCCACCGTTACGCGAAAGTGCTTGTGTCGAAAGCCACCGTGCAAATGCGCGTGCATCCTTCTCGGCGTGACCCTGGCACGAGTCGGGGCTCCGGGCGGGTTTAGTGCGGTGCGTGATCTCTTTCCGTGGATTAAAGGGGAAAGTCGGTCCAGGTGAACGGGTCGCGAAGCTTTAACATCTCGTTCGGTCGGTTCTGGACCTTCTGCCGCTGTTGTGATGACAGACCGAAGCCGTGGGACTGGTCAAGCGAGTACTAGTTAAATCATGATGCCACGTCATCTTACCCTATAACTAAAATCACTACTTTACCTCAGACAAACACACGAGGATCAGTCGAGCCATTTTCCTCCCTGCGGTCCCTTGTGTGGTGTCACTGGACCATGGTTCGCAAGAAAGGATCTCTTATATTGTGTGGAGCATTTCTATTTGTTGCCTGGAACGCCTTGCTGCTGCTCTTCTTATGGGGAAGGCCTCCCATTGGCCGACTTGGTGAGGGAGGCGGAGCTGAACCAGGGGCTGGAGAGGAGTGGGGAGGCGGAAAAGCAAAAGTGGGTGGAGCTAATGGATTGGCTGGCGAAGTGATCAGATTGGCCGAAGAAGTAGAATCAGAACTGGAGACTCAGAAGAAGCTTCTCAAACAGATACAGAGTCACAGGGAACTATGGGAACAGCGGAAAGAACTCGGAAAGAGGGAATCCGAGGACATAAAAAAAGACGAAAAGAACGTTGAGGAGCCTAAGAAACCTCAGCAGATTCCGGCAATACCTATAAGTCAAAAAATTGTAGATGAAGCAAAAATTGTTACAGAAAAACATGAGGTTCTAATAGTTACGCCACCTAAGCTGGTCatgaaggagcaggagaaggaGCAGGAACAGGAACAAGAGGACAAGAAAATGGCAGAAAATGAAGAAGGCCATACTAAACCAAGCCCTCAAATCATTATCCCAATTCTCGTCATTGCCTGTGACAGAGTAACGGTGAAGAGAAGTTTGGATAAACTCATACAGTACCGTCCTTCTGCTGAGCTTCACCCAATCATTGTCAGCCAGGACTGTGGTCATGCAGATACGGCAAGGGTGATTGGCTCCTATGGCAGTCAGATAACCCACATTAGCCAACCGGATCTTGCGGACATTCCAGTGCGACCCGATCACAGGAAGTTCCAGGGTTACTACAAGATCGCCAGGCACTACCGTTGGGCCCTGAACCAAGTGTTCAACGTCTTTGCTTACTCCACAGTGGTCATTGTGGAGGATGACCTGGAGGTGGCCCCAGACTTTTTTGAGTATTTCCGCGCGCTCTACCCCATCTTGCGATCGGATCCTAGTCTGTGGTGCATTTCTGCCTGGAATGATAACGGACGGGATGGGTTGGTCGACCCAGGCAGAGCTGACCTCCTTTACCGGACAGATTTCTTCCCCGGCCTCGGATGGATGCTTTTAAAGGAAGTCTGGGCAGAGCTGGAGCCCAAGTGGCCCAAGGCATTCTGGGACGACTGGATGCGGCACCCAGAGCAGCGGAAGGACCGCTCATGCATTCGTCCTGAGATCTCCAGGACTATAACGTTCGGGCGAAAAGGCGTCAGTTTGGGTCAATTTTTCGACCAGTATCTGCGCTACATAAAACTCAATACTGAATTCGTGCCTTTCACTAATCTGGACTTGTCCTACTTGGTCAGGGAGAAGTACGATGAAATCTTTGAAAAGGAAGTGTATAGCGCCCCCTTGGTGAAGGTGGAGGAACTGCAGCAGGGCGGGAGTCTGAAAGGCTCTGGGCCGTTTCGAGTTCAGTACTCAAGCAGAGACAGCTTTAAAGTGCTGGCCCGCAACTTGGGGGTTATGGATGATTTGAAGTCAGGGGTTCCCCGTGCCGGTTACAGGGGTGTAGTCAGCTTTATTTCCCGCGGACGAAGAATTTATCTGGCTCCCCCTCAGGGCTGGATTAAATATGACACCAGCTGGAGCTGAGGAGGATGAGCTTTGGACCACAATAGACCAGAAAGAGAAAACTCACAACTATTATTAAAAGTACAGGAGGAGAGAAACGCCCTCTCAAACCAAAGAAAACAGAGGCAGGGTGTGAAAGTTTGAGGACAGGTTAACACTAAGATGTGAGTATAAAATAACTGCTGTTTTGCTATGGAGGAACACCCAGGAATGCTGGGAACAGCACAAAAGTTGGTGCATCGTATTTGCGCAGCAATCATGCAACAATCTTCTCTCAGAGAAAACAGAGTTACGC
>XM_043217556.1
GAATGACGAGCAGTCTTATGACCTTGTATTGACTTGTGTGCGGCTCTGTGTCTGTCACAAACAATGAATGGACTTTGTTATTgcaaactttttctttctttcttttttttttttcactagcTAAGCGGTAGTTCGGACTCGTGAGAAAGGAAGACGGCTTGGTTTTAGCGGTACACTTCCTGTGGAAAGATTTAGCTTCGGTGCTTTCAGCATTTTCCTCCCTGCGGTCCCTTGTGTGGTGTCACTGGACCATGGTTCGCAAGAAAGGATCTCTTATATTGTGTGGAGCATTTCTATTTGTTGCCTGGAACGCCTTGCTGCTGCTCTTCTTATGGGGAAGGCCTCCCATTGGCCGACTTGGTGAGGGAGGCGGAGCTGAACCAGGGGCTGGAGAGGAGTGGGGAGGCGGAAAAGCAAAAGTGGGTGGAGCTAATGGATTGGCTGGCGAAGTGATCAGATTGGCCGAAGAAGTAGAATCAGAACTGGAGACTCAGAAGAAGCTTCTCAAACAGATACAGAGTCACAGGGAACTATGGGAACAGCGGAAAGAACTCGGAAAGAGGGAATCCGAGGACATAAAAAAAGACGAAAAGAACGTTGAGGAGCCTAAGAAACCTCAGCAGATTCCGGCAATACCTATAAGTCAAAAAATTGTAGATGAAGCAAAAATTGTTACAGAAAAACATGAGGTTCTAATAGTTACGCCACCTAAGCTGGTCatgaaggagcaggagaaggaGCAGGAACAGGAACAAGAGGACAAGAAAATGGCAGAAAATGAAGAAGGCCATACTAAACCAAGCCCTCAAATCATTATCCCAATTCTCGTCATTGCCTGTGACAGAGTAACGGTGAAGAGAAGTTTGGATAAACTCATACAGTACCGTCCTTCTGCTGAGCTTCACCCAATCATTGTCAGCCAGGACTGTGGTCATGCAGATACGGCAAGGGTGATTGGCTCCTATGGCAGTCAGATAACCCACATTAGCCAACCGGATCTTGCGGACATTCCAGTGCGACCCGATCACAGGAAGTTCCAGGGTTACTACAAGATCGCCAGGCACTACCGTTGGGCCCTGAACCAAGTGTTCAACGTCTTTGCTTACTCCACAGTGGTCATTGTGGAGGATGACCTGGAGGTGGCCCCAGACTTTTTTGAGTATTTCCGCGCGCTCTACCCCATCTTGCGATCGGATCCTAGTCTGTGGTGCATTTCTGCCTGGAATGATAACGGACGGGATGGGTTGGTCGACCCAGGCAGAGCTGACCTCCTTTACCGGACAGATTTCTTCCCCGGCCTCGGATGGATGCTTTTAAAGGAAGTCTGGGCAGAGCTGGAGCCCAAGTGGCCCAAGGCATTCTGGGACGACTGGATGCGGCACCCAGAGCAGCGGAAGGACCGCTCATGCATTCGTCCTGAGATCTCCAGGACTATAACGTTCGGGCGAAAAGGCGTCAGTTTGGGTCAATTTTTCGACCAGTATCTGCGCTACATAAAACTCAATACTGAATTCGTGCCTTTCACTAATCTGGACTTGTCCTACTTGGTCAGGGAGAAGTACGATGAAATCTTTGAAAAGGAAGTGTATAGCGCCCCCTTGGTGAAGGTGGAGGAACTGCAGCAGGGCGGGAGTCTGAAAGGCTCTGGGCCGTTTCGAGTTCAGTACTCAAGCAGAGACAGCTTTAAAGTGCTGGCCCGCAACTTGGGGGTTATGGATGATTTGAAGTCAGGGGTTCCCCGTGCCGGTTACAGGGGTGTAGTCAGCTTTATTTCCCGCGGACGAAGAATTTATCTGGCTCCCCCTCAGGGCTGGATTAAATATGACACCAGCTGGAGCTGAGGAGGATGAGCTTTGGACCACAATAGACCAGAAAGAGAAAACTCACAACTATTATTAAAAGTACAGGAGGAGAGAAACGCCCTCTCAAACCAAAGAAAACAGAGGCAGGGTGTGAAAGTTTGAGGACAGGTTAACACTAAGATGTGAGTATAAAATAACTGCTGTTTTGCTATGGAGGAACACCCAGGAATGCTGGGAACAGCACAAAAGTTGGTGCATCGTATTTGCGCAGCAATCATGCAACAATCTTCTCTCAGAGAAAACAGAGTTACGC

Function

NR:

description
hypothetical protein cypCar_00012377

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00726 MGAT1; alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217553.1 True 2326 mRNA 0.51 3 6660812 6670386
XM_043217554.1 False 2035 mRNA 0.50 3 6660812 6668595
XM_043217555.1 False 2257 mRNA 0.50 3 6660812 6669931
XM_043217556.1 False 2115 mRNA 0.49 3 6660812 6667787

Neighbor

gene id symbol gene type direction distance location
gtf2h4 gtf2h4,LOC107694324,LOC107584301,LOC107595596,LOC107677462 coding downstream 12570 6640009 ~ 6648242 (-)
gabbr1b gabbr1b,gabbr1,LOC107677456,LOC107584305,LOC107595614 coding downstream 35758 6519866 ~ 6625054 (-)
sacm1la sacm1la,sacm1l,LOC107694349,LOC107677458,LOC107584306,LOC107711326,LOC107754789,LOC108273174 coding downstream 152382 6494491 ~ 6508430 (-)
LOC122323303 LOC107584307,LOC107694350,LOC107711327,LOC107595591 coding downstream 166616 6485917 ~ 6494196 (-)
LOC122323305 LOC107754826,LOC107584364,LOC107694352,LOC107595620 coding downstream 176713 6478516 ~ 6484099 (-)
vars2 vars2,LOC107584340 coding upstream 2153 6672539 ~ 6696368 (-)
c19h6orf47 LOC107711334,LOC107677470,LOC107584299,LOC107595602,LOC107754833,LOC107694340 coding upstream 26516 6696902 ~ 6702200 (-)
si:ch211-152p11.4 LOC107754837,LOC107694339,LOC107584295,LOC107677469,LOC107711337,LOC107595601 coding upstream 46353 6716739 ~ 6725694 (-)
LOC122323845 LOC107584339 coding upstream 91689 6762075 ~ 6765872 (-)
adcy2b adcy2b,adcy2,LOC107694336,LOC107691497,LOC107595616,LOC107711297 coding upstream 99485 6769871 ~ 6821321 (-)
G131114 NA non-coding downstream 220730 6438205 ~ 6440082 (-)
G130999 NA non-coding downstream 305337 6354956 ~ 6355475 (-)
G130982 NA non-coding downstream 367546 6248351 ~ 6293266 (-)
G130978 NA non-coding downstream 424535 6234044 ~ 6236277 (-)
G130973 NA non-coding downstream 462451 6198125 ~ 6198361 (-)
G131153 NA non-coding upstream 23506 6693892 ~ 6704443 (-)
LOC122323439 NA non-coding upstream 32097 6702483 ~ 6708065 (-)
LOC122324260 NA non-coding upstream 32937 6703323 ~ 6703389 (-)
LOC122324261 NA non-coding upstream 33485 6703871 ~ 6703937 (-)
G131165 NA non-coding upstream 84028 6754414 ~ 6755435 (-)
polr1h znrd1,LOC107584303,LOC107754832,LOC107677479,LOC107694346,LOC107595594 other downstream 11423 6648390 ~ 6649389 (-)
sh3bp5lb sh3bp5lb,LOC107711328,LOC107677461,LOC107694325,LOC107754828,LOC107584304,LOC108435520 other downstream 21592 6627598 ~ 6639220 (-)
G131006 LOC107754818,LOC107731580 other downstream 297640 6362347 ~ 6363172 (-)
LOC122324254 NA other downstream 1255176 5404516 ~ 5405636 (-)
G130744 sema4ab,LOC107702572,LOC107672813,LOC107598230,LOC107731578,LOC107705066 other downstream 1400648 5141505 ~ 5260164 (-)
srd5a1 srd5a1,LOC107691541,LOC107711310,LOC107595623,LOC107694335 other upstream 179983 6850369 ~ 6858660 (-)
LOC122323893 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other upstream 686235 7356621 ~ 7360143 (-)
LOC122324169 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 other upstream 724794 7395180 ~ 7397946 (-)
LOC122323248 LOC107687071 other upstream 775372 7445758 ~ 7451916 (-)
G131373 NA other upstream 931747 7602133 ~ 7605143 (-)

Expression


Co-expression Network