ddx39b (ddx39b,LOC107584302,LOC107754831,LOC107694345,LOC107595593,LOC103042292,LOC108272881)


Basic Information

Item Value
gene id ddx39b
gene name ddx39b,LOC107584302,LOC107754831,LOC107694345,LOC107595593,LOC103042292,LOC108272881
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6649299 ~ 6659826 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217558.1
TGGGTCCTTCATCGAAACAGTAGATTCGTCGCGGATTGATGACGCCATCGCCAGCCTATCTAGCAGGTGCAGTGAAATTCAACTGCTTCATACAGTATTTCGAGGATGACGGAGAACGACGTTGAGAACGAGCTGTTGGACTATGAGGAGGATGAGGTTGATGCGGGTGGTGTCGGGGACACAGCCCTTGGACACAACGATGGCGGGATATCCATCAGAAAAGAAGGGGTCAAAGGGTCGTACGTGTCCATCCACTCCTCGGGATTCAGGGATTTCCTCCTCAAACCAGAACTGCTGAGAGCTATAGTGGACTGCGGCTTTGAACATCCATCTGAAGTTCAGCATGAATGCATTCCTCAGGCGATCCTGGGGATGGATGTATTATGTCAGGCCAAATCTGGAATGGGGAAGACCGCCGTCTTTGTGCTGGCCACCCTTCAGCAGCTGGAGCCAGTGACCGGGCAGGTTTCAGTGTTGGTGATGTGTCACACCCGAGAGCTGGCCTTCCAGATCAGCAAAGAGTACGAGCGCTTCTCCAAATACATGCCCAGCGTCAAGGTGGCAGTGTTCTTTGGTGGTTTATCTATAAAGAAGGATGAGGAGGTTCTGAAGAGAGAGAGCCCTCACGTGGTGGTGGGGACTCCTGGACGTATTCTAGCTCTGTCTCGCAACAAGAGTCTTAACCTACGCCACATCAAGCACTTCATCCTGGACGAATGCGACAAGATGCTGGAGCAGCTTGACATGCGGCGTGATGTCCAGGAGATCTTTCGCATGACCCCTCACGAGAAGCAGGTCATGATGTTCAGTGCCACCCTGAGCAAAGAGATTCGTCCCGTCTGCAGAAAGTTCATGCAAGATCCGATGGAAATTTTTGTGGACGACGAGACCAAGCTGACGCTTCACGGCCTCCAGCAGTACTACGTCAAGCTGAAGGACAACGAGAAGAACAGGAAGCTCTTTGACCTCCTGGATGTGTTGGAGTTCAATCAGGTGGTGATCTTCGTCAAGTCCGTGCAGCGTTGTATTGCTCTGGCTCAGTTGCTGGTGGAGCAAAATTTCCCTGCCATCGCCATTCATAGAGCAATGCCTCAAGACGAAAGATTAGCTCGATATCAGCAGTTCAAGGATTTCCAGAGACGGATCCTGGTGGCCACAAACCTGTTCGGCCGAGGTATGGACATCGAAAGAGTCAACATCGCCTTCAACTACGACATGCCTGAAGATTCAGACACGTACCTGCACAGGGTTGCTAGAGCCGGCAGGTTTGGAACGAAAGGTCTGGCCATCACTTTTGTGTCAGATGAGACTGACGCCCGCACGTTGAACGATGTTCAGGACAGGTTTGAGGTGAACATCAGCGAACTTCCAGAGGAGATTGACATCTCTTCATATATTGAACAAACGCGATAAAGACGACAGAACGCAAAAGGCAGCAGTTTCTTCGGAGGATGCATGGCATTGTAGCAACTGGTAGCAACAGAGAGTTTGTCACATAGACTGTTAATGGTGTTAGTGAACAGCTCATATCGCAGTGTTATCCTATAATGTAGTGGATTTCCTAATACCTCCTCAGTGGTTCAGTTTGACTTTGCttgttgaaagtaaaaaaacaacattattttcaatgttaacATTTTTCCTCCCAATATGAATAATTTGCTTGTGTTTTGAATTTTGGTTATTTACAAACGGAGAGGCATAATTTTGGTTTTCTGTTGTGAGAGGAGGCGTTTTCATCACTCTATTGTAACGGACCATACATTTGATTTGCATTGATGTTATATTGTTTGAAAGTTATTCAATATATTagcagtatatgctgaatgctTGTTACCAGTGAAGTAGGCATCAACGAAATGTGTTCAGTGTACGTTCAGACAAATGGTCACTTTGTTTAAACTAATTAATGCTTGTTAAACCAAATAAAGTACGTTTGtttgatttacaaaaacactTGAGCATTTTCACACGTTTGTAAGACTTTTAAATGCTACCTAAACGgttcaaattcaaaatgtaacATCCCCTGTCCCCAGTTTCGCAGACTGTACTGATGACAAACATTACGCTGAAAAGAACAGCTCACTAGATCTCACCAACTGTGCACATGACGGATtggaacaaagaaaataaaggaCGTCTATGACCTTCAGAATTCATTTACACTCCAAAGGTGTCACAGAAGTGCTTCTGAAGTGgcatttatattaatgctgCTTTGAGatggcatgaatgcatttacgcCACTATTTCGATTGTATATTGATATTAGGAAGTGATGTGCGTCAGAGCAGAAATAATTTAGTCTGGCTTTTATGCATTTCTACAGTACACTGAATTTTGGCCTATTCAAGGCCTGTTTGCGCCAAGAACGATAACTAGCATCCAGTAACTATATTAGCATCCAAATCAGCAGACAATATATATATCCGTTTATTCGATGCACTGCACACTCATCTGCTTCTTTAAATTCTCGAGCTCATTAGCCTATAGCAAGGTTGATTCCGATTGGTcgtcaatgtttttattcatcatcTAGAATAAAAAGtctgtgcctttatcgttatagCTGCGCTATTCTTTAATACTGAGAACAATTTTTATCTTATAGTTATCGTCCTTGGTGGGAACAGGCTTTCACAACTACCTTTCAGATCCGAAAGATTTCTTGTACATGTTCTTAAAGTTAATAGCAATCAATTTGCTAACGTGATACATCTTAGTTTTTGTGCAATTTAACAGACATTGGAGTTGGGCATCCATTAAATGAACTCATTGCTGCATCGGGAGATTCTAGTATAGACAGCTTTGTTTCCCTATAAGACAACTTGCCAGACTGAGCTTTTGTTGTTTGGAAAGCGATAGAGACCAGCTGCTTATTCGGACTGGTTTTCtgtaaaagtgcaaaaaaaaaaaaaaaaaaaaaatgctaaaggGAGCTCTTCAAGTCACAAAAAGCATGCTGGATACATTCTGAACCACttaatttcagcttttagtCTTTTCCCTGATCTGATGTGGCAATGTGATCAACCAATTAATCAATCTTGCTGGAATGAGATGTTCTTGCGTGATTCACCGCTGCCCTATTCCCAGAAAAACTGcctaaaagaaacacaaaatgaacGCGCAATTAATCTAATCAGTGACACGCATCCTTTGGGCTTTTTGAAAAGTTGCTGTTGGTTGTACAAGAACAGGAAAGAACGTAGTAAAGTCAACCGCAGAGAGCCATGAGACAGGAAGTCAACAGGACACGAGAGGAGTGAGAAAGGAAATCTGGAGAGACAGAGATGTCAAAGGTGTCACATTGGCGCCTGGATCAGTGCTGATGTTGGGGGTTTGGACAAATGATCCCTGGAAGGAAGTCACCAGATAGGATTTCAGCTTCAACAACCAACATGACACAGAAAGAACATGTTTACAAACCTCAAAACGAGTGactttaaaagagaaaattgAACATTTAGGACTTAAAAAGCTTAATGCCAACTggatatttaaatgaacaaaaaaagagagcaaaaaaacagcatatatatTGCCAAATATCAAAATAGTCTGTTTTATTCTCAATGTATTAAAGTTATAAACATGTCA
>XM_043217559.1
agaGTTCTTGTCGATATTCTGAGACGTCTCTTCTCAGGGCAGTTCTCGCAGTTGCACATGTTGGGTCCTTCATCGAAACAGTAGATTCGTCGCGGATTGATGACGCCATCGCCAGCCTATCTAGCAGGATGACGGAGAACGACGTTGAGAACGAGCTGTTGGACTATGAGGAGGATGAGGTTGATGCGGGTGGTGTCGGGGACACAGCCCTTGGACACAACGATGGCGGGATATCCATCAGAAAAGAAGGGGTCAAAGGGTCGTACGTGTCCATCCACTCCTCGGGATTCAGGGATTTCCTCCTCAAACCAGAACTGCTGAGAGCTATAGTGGACTGCGGCTTTGAACATCCATCTGAAGTTCAGCATGAATGCATTCCTCAGGCGATCCTGGGGATGGATGTATTATGTCAGGCCAAATCTGGAATGGGGAAGACCGCCGTCTTTGTGCTGGCCACCCTTCAGCAGCTGGAGCCAGTGACCGGGCAGGTTTCAGTGTTGGTGATGTGTCACACCCGAGAGCTGGCCTTCCAGATCAGCAAAGAGTACGAGCGCTTCTCCAAATACATGCCCAGCGTCAAGGTGGCAGTGTTCTTTGGTGGTTTATCTATAAAGAAGGATGAGGAGGTTCTGAAGAGAGAGAGCCCTCACGTGGTGGTGGGGACTCCTGGACGTATTCTAGCTCTGTCTCGCAACAAGAGTCTTAACCTACGCCACATCAAGCACTTCATCCTGGACGAATGCGACAAGATGCTGGAGCAGCTTGACATGCGGCGTGATGTCCAGGAGATCTTTCGCATGACCCCTCACGAGAAGCAGGTCATGATGTTCAGTGCCACCCTGAGCAAAGAGATTCGTCCCGTCTGCAGAAAGTTCATGCAAGATCCGATGGAAATTTTTGTGGACGACGAGACCAAGCTGACGCTTCACGGCCTCCAGCAGTACTACGTCAAGCTGAAGGACAACGAGAAGAACAGGAAGCTCTTTGACCTCCTGGATGTGTTGGAGTTCAATCAGGTGGTGATCTTCGTCAAGTCCGTGCAGCGTTGTATTGCTCTGGCTCAGTTGCTGGTGGAGCAAAATTTCCCTGCCATCGCCATTCATAGAGCAATGCCTCAAGACGAAAGATTAGCTCGATATCAGCAGTTCAAGGATTTCCAGAGACGGATCCTGGTGGCCACAAACCTGTTCGGCCGAGGTATGGACATCGAAAGAGTCAACATCGCCTTCAACTACGACATGCCTGAAGATTCAGACACGTACCTGCACAGGGTTGCTAGAGCCGGCAGGTTTGGAACGAAAGGTCTGGCCATCACTTTTGTGTCAGATGAGACTGACGCCCGCACGTTGAACGATGTTCAGGACAGGTTTGAGGTGAACATCAGCGAACTTCCAGAGGAGATTGACATCTCTTCATATATTGAACAAACGCGATAAAGACGACAGAACGCAAAAGGCAGCAGTTTCTTCGGAGGATGCATGGCATTGTAGCAACTGGTAGCAACAGAGAGTTTGTCACATAGACTGTTAATGGTGTTAGTGAACAGCTCATATCGCAGTGTTATCCTATAATGTAGTGGATTTCCTAATACCTCCTCAGTGGTTCAGTTTGACTTTGCttgttgaaagtaaaaaaacaacattattttcaatgttaacATTTTTCCTCCCAATATGAATAATTTGCTTGTGTTTTGAATTTTGGTTATTTACAAACGGAGAGGCATAATTTTGGTTTTCTGTTGTGAGAGGAGGCGTTTTCATCACTCTATTGTAACGGACCATACATTTGATTTGCATTGATGTTATATTGTTTGAAAGTTATTCAATATATTagcagtatatgctgaatgctTGTTACCAGTGAAGTAGGCATCAACGAAATGTGTTCAGTGTACGTTCAGACAAATGGTCACTTTGTTTAAACTAATTAATGCTTGTTAAACCAAATAAAGTACGTTTGtttgatttacaaaaacactTGAGCATTTTCACACGTTTGTAAGACTTTTAAATGCTACCTAAACGgttcaaattcaaaatgtaacATCCCCTGTCCCCAGTTTCGCAGACTGTACTGATGACAAACATTACGCTGAAAAGAACAGCTCACTAGATCTCACCAACTGTGCACATGACGGATtggaacaaagaaaataaaggaCGTCTATGACCTTCAGAATTCATTTACACTCCAAAGGTGTCACAGAAGTGCTTCTGAAGTGgcatttatattaatgctgCTTTGAGatggcatgaatgcatttacgcCACTATTTCGATTGTATATTGATATTAGGAAGTGATGTGCGTCAGAGCAGAAATAATTTAGTCTGGCTTTTATGCATTTCTACAGTACACTGAATTTTGGCCTATTCAAGGCCTGTTTGCGCCAAGAACGATAACTAGCATCCAGTAACTATATTAGCATCCAAATCAGCAGACAATATATATATCCGTTTATTCGATGCACTGCACACTCATCTGCTTCTTTAAATTCTCGAGCTCATTAGCCTATAGCAAGGTTGATTCCGATTGGTcgtcaatgtttttattcatcatcTAGAATAAAAAGtctgtgcctttatcgttatagCTGCGCTATTCTTTAATACTGAGAACAATTTTTATCTTATAGTTATCGTCCTTGGTGGGAACAGGCTTTCACAACTACCTTTCAGATCCGAAAGATTTCTTGTACATGTTCTTAAAGTTAATAGCAATCAATTTGCTAACGTGATACATCTTAGTTTTTGTGCAATTTAACAGACATTGGAGTTGGGCATCCATTAAATGAACTCATTGCTGCATCGGGAGATTCTAGTATAGACAGCTTTGTTTCCCTATAAGACAACTTGCCAGACTGAGCTTTTGTTGTTTGGAAAGCGATAGAGACCAGCTGCTTATTCGGACTGGTTTTCtgtaaaagtgcaaaaaaaaaaaaaaaaaaaaaatgctaaaggGAGCTCTTCAAGTCACAAAAAGCATGCTGGATACATTCTGAACCACttaatttcagcttttagtCTTTTCCCTGATCTGATGTGGCAATGTGATCAACCAATTAATCAATCTTGCTGGAATGAGATGTTCTTGCGTGATTCACCGCTGCCCTATTCCCAGAAAAACTGcctaaaagaaacacaaaatgaacGCGCAATTAATCTAATCAGTGACACGCATCCTTTGGGCTTTTTGAAAAGTTGCTGTTGGTTGTACAAGAACAGGAAAGAACGTAGTAAAGTCAACCGCAGAGAGCCATGAGACAGGAAGTCAACAGGACACGAGAGGAGTGAGAAAGGAAATCTGGAGAGACAGAGATGTCAAAGGTGTCACATTGGCGCCTGGATCAGTGCTGATGTTGGGGGTTTGGACAAATGATCCCTGGAAGGAAGTCACCAGATAGGATTTCAGCTTCAACAACCAACATGACACAGAAAGAACATGTTTACAAACCTCAAAACGAGTGactttaaaagagaaaattgAACATTTAGGACTTAAAAAGCTTAATGCCAACTggatatttaaatgaacaaaaaaagagagcaaaaaaacagcatatatatTGCCAAATATCAAAATAGTCTGTTTTATTCTCAATGTATTAAAGTTATAAACATGTCA

Function

symbol description
ddx39b Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in mRNA export from nucleus and mRNA splicing, via spliceosome. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human DDX39B (DExD-box helicase 39B).

NR:

description
spliceosome RNA helicase DDX39B

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12812 DDX39B, UAP56, SUB2; ATP-dependent RNA helicase UAP56/SUB2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217558.1 False 3603 mRNA 0.43 11 6649360 6659826
XM_043217559.1 True 3626 mRNA 0.43 11 6649299 6659826

Neighbor

gene id symbol gene type direction distance location
tnfa LOC107694347 coding upstream 131937 6515100 ~ 6517362 (+)
nelfe nelfe,LOC107754803,LOC107584366,LOC107694353,LOC107677468,LOC107595590,LOC107711324 coding upstream 172149 6473609 ~ 6477150 (+)
LOC122323487 LOC107694355,LOC107754822,LOC107595588,LOC107711322 coding upstream 206171 6435232 ~ 6443128 (+)
gon4la LOC107754817,LOC107694363,LOC107584344 coding upstream 271700 6365518 ~ 6377599 (+)
ints3 ints3,LOC107754816,LOC107584314,LOC107731564,LOC107694364,LOC107677482 coding upstream 288107 6346789 ~ 6361192 (+)
atat1 atat1,LOC107584296,LOC107694337,LOC107754836,LOC107711335,LOC107677465,LOC107595600 coding downstream 45014 6704840 ~ 6716985 (+)
c19h5orf49 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 coding downstream 107815 6767641 ~ 6769745 (+)
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338,LOC107595605 coding downstream 199243 6859069 ~ 6877006 (+)
irx4b irx4,LOC107754842,LOC107584360,LOC107691545,LOC107595627 coding downstream 373757 7033583 ~ 7038126 (+)
mrpl36 mrpl36 coding downstream 383613 7043439 ~ 7044961 (+)
G131093 LOC107694325,LOC107711328,LOC107754828,LOC107584304,LOC107677461,LOC107595615 non-coding upstream 10070 6638481 ~ 6639229 (+)
G131016 LOC107677454,LOC107595587,LOC107584310,LOC107694359,LOC107754821 non-coding upstream 239558 6405385 ~ 6409741 (+)
G131010 NA non-coding upstream 255342 6392916 ~ 6393957 (+)
G130950 NA non-coding upstream 315055 6331665 ~ 6334244 (+)
LOC122324219 NA non-coding upstream 385345 6255006 ~ 6263954 (+)
G131241 NA non-coding downstream 296743 6956569 ~ 6956786 (+)
G131245 NA non-coding downstream 316704 6976530 ~ 6976854 (+)
G131249 NA non-coding downstream 322124 6981950 ~ 6982175 (+)
G131252 NA non-coding downstream 354063 7013889 ~ 7014418 (+)
G131256 NA non-coding downstream 372435 7032261 ~ 7032591 (+)
G131042 gabbr1b,LOC107595614,LOC107677456,LOC107584305 other upstream 123219 6519920 ~ 6526080 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other upstream 160539 6463083 ~ 6488760 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other upstream 248001 6371835 ~ 6401298 (+)
LOC122323983 tac1,LOC107702667,LOC107731560,LOC107754813,LOC107672864 other upstream 726326 5785130 ~ 5922973 (+)
LOC122323254 sdhaf3,LOC107702681 other upstream 896382 5745801 ~ 5752917 (+)
ppp1r11 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other downstream 32148 6691974 ~ 6696204 (+)
G131183 NA other downstream 174043 6833869 ~ 6836858 (+)
med10 med10,LOC107691542,LOC107595625,LOC107584362 other downstream 240809 6900635 ~ 6902398 (+)
lpcat1 lpcat1,LOC107584290,LOC107694330,LOC107754844,LOC107691501 other downstream 386787 7046613 ~ 7066858 (+)
LOC122323953 sox4a,LOC107584287,LOC107694328,LOC107754846,LOC107711341,LOC107691508 other downstream 574645 7234471 ~ 7257652 (+)

Expression


Co-expression Network