XLOC_006759 (rrbp1a)


Basic Information

Item Value
gene id XLOC_006759
gene name rrbp1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33611703 ~ 33639050 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013011
GAAAGTGCCACGACTCCACACAGACATCGGCTGACTCCTCAAGCTGgggataagattttttttttgtttttttgctggcGTGGTAAGGCAGTTGGATTCGAGATATTCTCCTCTCTATCAACTCTTCCTGAAGTGATTCATCAAACGGAAATCTGCCGCGAGAAAAGTAAGGACACTTGCAGTCATGGACATCTATGATCCTCAAACTCTTGGAATTGTGGTGTTTGGTGGCTTCATGGTGTTCTCAGCCATTGGGATTGCTTTGGTCTCAACATTTTCCATGAAAGAGACGTCATATGAAGAGGCTTTAGCCAAACAGCGCAAGGAGCAAGGGAAGACCCAATCCAGCCAAAAATCAGACAAGAAGAAAAAGGACAAGGTAGCTGAGAAGAAAAATCGTAGTAAGAAAAAGGAAGATAAACCTAATGGGAAACTCCTGGAATCAGAGTCCACTGCTGAGGTTTCTGAAGTAGCAAATGAGCCTAGTCCTCCCATTCCTTTAGCCCCAGAACAAGTTGCTGTGCCAGCACCCAAACAAGAGGCTTCAATTCAGAAATCTGTCCAACCCACCTCTTCTCAGAAGACCACTTCACCTGCCCTGGCTCAGAAATCAGTCCCAGCTGTCCAAGCTCAGAAGTCAGCTCCACCTGCCCCGGCCCAAAAGGCTGCTCCACCTGCCCCAGCCCAAAAGTCTGCTCCACCTGCTTCGGCCCAAAAATCTGCTCCAGCACCTCCCACTCAAAAAACCTCTCCAGCATCTCCAAACCAGAAATCCTCTCCAGCGCCTCCCACCCAAAAAACATCTCCAAATCCTTCTGGCAAAAAATCTGCTTCACCTCCTCCTGCCCAGAAACCTGCTTCACCTGCCCCAGCCTCAAAGTCAGCTCCAGCTGCCCCTGCCCAGAAGTCCACTACAGTTGCTCCATCCCAAAAGTCTGCTTCAGAAGCTCCAGCCCAGAAGGCCACTCCACCTGCCCCAGCCCAGAAAGCTGCTACAACTGCCCCAGCCCAGAAAGCTGCTCCACCTGCCCAAGCTCAGAAAGCCACGTCATCTTCCTCATCCCAAAAACCCACTCCACCTGCTCCAGTCCAAAAATCTGCTCAGCCGGCCCCTACAGAAAAATCTGCCAAAGCCCAAAAAGCTGCTTCAACTGCCCCAGCACAGAAATCATCTCCACCTGCCCCACCCCAAAAACCTGCTTCAAATCCTCAGCCCCAGAAAGGCACTCAAAAAAGTGCAAGAATTAGAAGAGACTGCAGAGCGCTTGAGAGCAGAGAGCCAAGGCAACCAACAGCTGCAGGAGCAAGTGAAGCTGCTGGAGGCTCAGTTGGAGGAACAGCTGCAGTCAGCTTCCACTGACAGTCAGAGTCAATCTGAAGAGATGGCACACTTGAAGCAGGCTTTAGCTGATACAGAAAGCCAGTTGAATTCGGCCCAGAAGGAGGCACAGACACAGAGAGAGGAACTTTTACAGGTCAAGCAGCAACTCAACGACGTGACAAAACGAGCTCAGGGAGTGGCGGAGAACGGGCAGCCTGAGGCAGAGGAGTGTCAGGTCCAGGATCAGCTTGAACAGACATTAGAAAAACTGCAGGGTGAACAGGCTCTAAACCAGCAGCTCTCTGCAGAAGTGGAGCAGGCTCAGGAAACCCTCAAAATTCATCTCCAGAGCCATCTAGAACAGATGAAATCAGCTGAAGACACTGCAGCCATGGGAGATGTTGTTCAGCTGAAGGAGTGTCTTGAGAAAGAGCGAAAGATGACCAAAGATTTAGGCCAGGCAGCCACTAAACTTCAGCAGCTGCTGAGAAACAGTCAGGACCAACTTGCCAAAGAGAAGGAGAAAGTCAGAAGCCTGCACGATCAGTTGCAAAACAAGGTGAACAAGCTTTCATAACAATAAAAGTTTGTAGGTGGTACAGCTGTGTGCTTATGAATTGATGTGCTTTTGTTTTCAGGAAGGAGATGGAGAGCTGAAGCAAGGCACTTCTGTTTGAGGTGGAAAGCAAAACATTTAGCCAAAAATTGCCTTACAATGACCAAAATGAAGCATtccgatgttttttttttattattattattttttgtcgtACTGTAGTCATGGGAGAAATTGTATGAAGACCAATGGAGAAACCTAACTTGTGCAAATGTTTTTATGGAGATGCGCTGGAACCATTTTCACTTTACATTCCACCTAAAACCTTCTGGCTATGTCAGAAACAATGCCTTATATATATCCTTCGTGTTCCTGCATTTCTCCTGATGTCAGTGTTAAAAGGGAAACCGTATGTACGTTATGCGTACATCAACTAGTGCAATTAATTACTTGGAAGTAAATGAGTATGGATAATTGTATGGTACATGGATTCAGCATTTGGAATGGCCTCTCTGTAGCTGGCTTCAACACCACTGTATAAgtttgataataaataataaacagcaacATAGTTA
>TCONS_00013012
GGCCACTGACCGGCGTAATGCCAGCGCGAGAAAGTGCCACGACTCCACACAGACATCGGCTGACTCCTCAAGCTGgggataagattttttttttgtttttttgctggcGTGGTAAGGCAGTTGGATTCGAGATATTCTCCTCTCTATCAACTCTTCCTGAAGTGATTCATCAAACGGAAATCTGCCGCGAGAAAAGTAAGGACACTTGCAGTCATGGACATCTATGATCCTCAAACTCTTGGAATTGTGGTGTTTGGTGGCTTCATGGTGTTCTCAGCCATTGGGATTGCTTTGGTCTCAACATTTTCCATGAAAGAGACGTCATATGAAGAGGCTTTAGCCAAACAGCGCAAGGAGCAAGGGAAGACCCAATCCAGCCAAAAATCAGACAAGAAGAAAAAGGACAAGGTAGCTGAGAAGAAAAATCGTAGTAAGAAAAAGGAAGATAAACCTAATGGGAAACTCCTGGAATCAGAGTCCACTGCTGAGGTTTCTGAAGTAGCAAATGAGCCTAGTCCTCCCATTCCTTTAGCCCCAGAACAAGTTGCTGTGCCAGCACCCAAACAAGAGGCTTCAATTCAGAAATCTGTCCAACCCACCTCTTCTCAGAAGACCACTTCACCTGCCCTGGCTCAGAAATCAGTCCCAGCTGTCCAAGCTCAGAAGTCAGCTCCACCTGCCCCGGCCCAAAAGGCTGCTCCACCTGCCCCAGCCCAAAAGTCTGCTCCACCTGCTTCGGCCCAAAAATCTGCTCCAGCACCTCCCACTCAAAAAACCTCTCCAGCATCTCCAAACCAGAAATCCTCTCCAGCGCCTCCCACCCAAAAAACATCTCCAAATCCTTCTGGCAAAAAATCTGCTTCACCTCCTCCTGCCCAGAAACCTGCTTCACCTGCCCCAGCCTCAAAGTCAGCTCCAGCTGCCCCTGCCCAGAAGTCCACTACAGTTGCTCCATCCCAAAAGTCTGCTTCAGAAGCTCCAGCCCAGAAGGCCACTCCACCTGCCCCAGCCCAGAAAGCTGCTACAACTGCCCCAGCCCAGAAAGCTGCTCCACCTGCCCAAGCTCAGAAAGCCACGTCATCTTCCTCATCCCAAAAACCCACTCCACCTGCTCCAGTCCAAAAATCTGCTCAGCCGGCCCCTACAGAAAAATCTGCCAAAGCCCAAAAAGCTGCTTCAACTGCCCCAGCACAGAAATCATCTCCACCTGCCCCACCCCAAAAACCTGCTTCAAATCCTCAGCCCCAGAAAGGCACTCCACTCGCCGCATCCCAGAAATCAGAAACACCCACAGAAAAATCTGTCAAAGCACAAAAAGCTGCTCCACCTGCCCCAGCTCAGAAATCCTCTCCACCTGACAGAAAACCCAGCCCATCTGCCCCGGCTTCTTCACAAAATTCTACTTCAGGTATTACCCCTGCTCCACCCTGTCCTACCGTTGAAGATGCCCCACCTGCTCCATCTCCTAAGGGTAAGAGAAAGAAGAAAAGCAAAGCAGAGTCTGCTTCTGCTGAGGTTCAGCCCAAATCAGTTGCTCCATTGGAGGTGGTGACTAAAAAAGTTCCCGTCATGGCAGTGCCTCCGGTGGGCACTCAGAAAGCTGCAGCAGTGACTGCTGTGCCAGTGAAGGCAGAAGAGTCTAAACAGGATGCTCCACCCAAGAAGAAATCAGGATCCAAGAAAAAGGCTGAGCCAGCGGTGGCTGCAGACCCTGCAGACAGTCCACTGTATCTGCCCTACAAAGCCCTGCTTTCCACAGTGAGGAGTATGGTGTTCAGTGAAGGAGAAGCTCAGCAGCTTATTCAGATTCTGTCTGATAAGGCTGGTATTATTCAGGACACATGGCAAAAGGCCACACAGAAGGGAGATCCGGTAGTTTTGCTGAAGAAACAGCTGGAGGAACGAGACAAGCAGCTGGCAGCTGAGCAGGAGGATGCAGCAGCTGCTAAAGGACGACTAAGAGATTTGAATAAAGAGCTGTCTGTGGAGAAGTCTAAGGTGGCGTCAATAGAGACCAGGCTAAGCTCTCAGTTGAGCAAGCGAGAGCAGGACATCATCGCACTGCAAGCACGCATGCAGGCCAGTTACCAAGACCACCTAGCCGAGTCTCAGCAGCTCAATGCTAAACTTTTGGCTCTCCAGGACCAGCTGGAGAAAGGCCCTAATGCTCAGCTGGCCCGTCTACAGCAGGAGAACTCCATTCTCAGAGATGCGCTTAACCAAGCTACCAGTCAGACCGAGAGCAAACAAAATGCTGAATTGGCCAAACTGCGTCAGGACTGCGTTCGGCTGAATAAAGAACTGGCGGAGAAGAACGATGCATTGCAGGCTGACGAGCAACTAAGGAAAAATCTAGAAACCAAAGCCGCCAGCGTTGAAAAACAACTAAACCAGATGCAGGCGAGCAGGGCGAATGCTGAACAAGCTCTGCAGAAGCGTCTGGAGGAAGTGAGTGAGGAGCTCAGACAGACCCAGAGCAACAGAAACAACCTTCAGGCACAACTTGAACAAGCTCAGAAAGATGCTGCTGCTCTTGCAGAGGCTAAAGCTCGTGTGGCCAGTGTGGAGGTGGAAATGAAAGAGCGGACTGGACATTTGGAGAGTCTGCAGAGCCAGCTGAAACAGAcgcagacagagagagagcagCAGCTGAAAGAACAAAATGACATATCAGAGACTGTGACAGCTGAACTGGAGCAGGCAAGAAAGAGcctGAAGGAGAAGGAAATTGCAGTTTCAACACTTGAGGAAGAGCTGACTCAACTCAAAAACACCATCTCCAATCAGGTGAATCAGGTGGATAGCACAACAGATGTGCAGCATTTACAGCAAAGCATAAAAGAAAAGGATACCCAAATAGCAGCTCTTCAGGGAGAACTACAACAGGCTAAAGAGAAAAGTTCAGACCTAAACAAACTTGAAAACCAAGAAATGCTGGAACAATTACAAAAGAGTTTGAAAGAAAAGGAGTCTCGTGAGAAGTTGTTTGAAGAACAGATAAGGCAATGTAAGGAACAGTGTAGCACTAAACTGGCAGACAGCACAGCCCAACTAGATTCACTACATAAAAGAATATCTGAAAAAGAGAGCTTGATGACAACACTACAACAGGAAGTACAGCAGCTCAAGGAACTAAACCAGTCACAAAGCAAGAGTTTTGAGAGTTTGGAGGATATGCTGAAGTCTTTCCAGGGCGAAACTAAAGAAGTTCTTCACTCTCTTTTCCCACACATCAATATAGAGACAGCAAAGaccaaATGGCTGCAGGACTTTGCTGTAAAAGCACAAGAGCTTTTAAATCAGAAGCAACAAAGCCAAGAATCTCAGCAAAGCACAGAGATAGTGGAGATGATGGGTAAGCTACAGGCAGCCCAGGAGAGTCAATGCACATTACAGTCTGAGTGTGAACAGTACAGGATCGTTCTGGCGGAAACGGAGGGGATGCTGAAAACACTTCAGAAGAGTGTAGAGGAGGAGGAGAGTGTGTGGAGGACAAAGATTTCAGAATCTGAGGACAAACTGAGGATGGCACTCAAAAAAGTGCAAGAATTAGAAGAGACTGCAGAGCGCTTGAGAGCAGAGAGCCAAGGCAACCAACAGCTGCAGGAGCAAGTGAAGCTGCTGGAGGCTCAGTTGGAGGAACAGCTGCAGTCAGCTTCCACTGACAGTCAGAGTCAATCTGAAGAGATGGCACACTTGAAGCAGGCTTTAGCTGATACAGAAAGCCAGTTGAATTCGGCCCAGAAGGAGGCACAGACACAGAGAGAGGAACTTTTACAGGTCAAGCAGCAACTCAACGACGTGACAAAACGAGCTCAGGGAGTGGCGGAGAACGGGCAGCCTGAGGCAGAGGAGTGTCAGGTCCAGGATCAGCTTGAACAGACATTAGAAAAACTGCAGGGTGAACAGGCTCTAAACCAGCAGCTCTCTGCAGAAGTGGAGCAGGCTCAGGAAACCCTCAAAATTCATCTCCAGAGCCATCTAGAACAGATGAAATCAGCTGAAGACACTGCAGCCATGGGAGATGTTGTTCAGCTGAAGGAGTGTCTTGAGAAAGAGCGAAAGATGACCAAAGATTTAGGCCAGGCAGCCACTAAACTTCAGCAGCTGCTGAGAAACAGTCAGGACCAACTTGCCAAAGAGAAGGAGAAAGTCAGAAGCCTGCACGATCAGTTGCAAAACAAGGAAGGAGATGGAGAGCTGAAGCAAGGCACTTCTGTTTGAGGTGGAAAGCAAAACATTTAGCCAAAAATTGCCTTACAATGACCAAAATGAAGCATtccgatgttttttttttattattattattttttgtcgtACTGTAGTCATGGGAGAAATTGTATGAAGACCAATGGAGAAACCTAACTTGTGCAAATGTTTTTATGGAGATGCGCTGGAACCATTTTCACTTTACATTCCACCTAAAACCTTCTGGCTATGTCAGAAACAATGCCTTATATATATCCTTCGTGTTCCTGCATTTCTCCTGATGTCAGTGTTAAAAGGGAAACCGTATGTACGTTATGCGTACATCAACTAGTGCAATTAATTACTTGGAAGTAAATGAGTATGGATAATTGTATGGTACATGGATTCAGCATTTGGAATGGCCTCTCTGTAGCTGGCTTCAACACCACTGTATAAgtttgataataaataataaacagcaacATA
>TCONS_00013013
GAGATGATGGGTAAGCTACAGGCAGCCCAGGAGAGTCAATGCACATTACAGTCTGAGTGTGAACAGTACAGGATCGTTCTGGCGGAAACGGAGGGGATGCTGAAAACACTTCAGAAGAGTGTAGAGGAGGAGGAGAGTGTGTGGAGGACAAAGATTTCAGAATCTGAGGACAAACTGAGGATGGCACTCAAAAAAGTGCAAGAATTAGAAGAGACTGCAGAGCGCTTGAGAGCAGAGAGCCAAGGCAACCAACAGCTGCAGGAGCAAGTGAAGCTGCTGGAGGCTCAGTTGGAGGAACAGCTGCAGTCAGCTTCCACTGACAGTCAGAGTCAATCTGAAGAGATGGCACACTTGAAGCAGGCTTTAGCTGATACAGAAAGCCAGTTGAATTCGGCCCAGAAGGAGGCACAGACACAGAGAGAGGAACTTTTACAGGTTAGTTGGTTTTACTCAGAGGCCAGTGCAATTGTGTTTATCCATAATCCTGTGCAGAAG
>TCONS_00013014
GGATAGCACAACAGATGTGCAGCATTTACAGCAAAGCATAAAAGAAAAGGATACCCAAATAGCAGCTCTTCAGGGAGAACTACAACAGGCTAAAGAGAAAAGTTCAGACCTAAACAAACTTGAAAACCAAGAAATGCTGGAACAATTACAAAAGAGGTACGCGTCATTTGTAATCCACACAAGATTTCACATATATAATCTGTTATTAAAATGATTCCTGTTTCTGTAGTTTGAAAGAAAAGGAGTCTCGTGAGAAGTTGTTTGAAGAACAGATAAGGCAATGTAAGGAACAGTGTAGCACTAAACTGGCAGACAGCACAGCCCAACTAGATTCACTACATAAAAGAATATCTGAAAAAGAGAGCTTGATGACAACACTACAACAGGAAGTACAGCAGCTCAAGGAACTAAACCAGTCACAAAGCAAGAGTTTTGAGAGTTTGGAGGATATGCTGAAGTCTTTCCAGGGCGAAACTAAAGAAGTTCTTCACTCTCTTTTCCCACACATCAATATAGAGACAGCAAAG

Function

symbol description
rrbp1a Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in several structures, including anterior axial hypoblast; axial mesoderm; axis; cardiovascular system; and hatching gland. Orthologous to human RRBP1 (ribosome binding protein 1).

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9795 Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in several structures, including anterior axial hypoblast; axial mesoderm; axis; cardiovascular system; and hatching gland. Orthologous to human RRBP1 (ribosome binding protein 1).

Ensembl:

ensembl_id ENSDARG00000013763

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013011 False 2452 nonsense_mediated_decay 0.47 9 33611703 33639021
TCONS_00013012 False 4674 mRNA 0.48 29 33611707 33639050
TCONS_00013013 False 495 lncRNA 0.49 5 33617011 33619922
TCONS_00013014 True 527 lncRNA 0.39 6 33621270 33622673

Neighbor

gene id symbol gene type direction distance location
XLOC_006757 NA coding downstream 148059 33452438 ~ 33463644 (-)
XLOC_006758 NA coding downstream 152385 33457523 ~ 33459318 (-)
XLOC_006756 btbd6a coding downstream 212968 33394116 ~ 33398735 (-)
XLOC_006755 zgc:172120 coding downstream 249512 33342455 ~ 33362191 (-)
XLOC_006754 si:dkey-71p21.13 coding downstream 290162 33320063 ~ 33321541 (-)
XLOC_006760 snx5 coding upstream 6363 33645413 ~ 33654931 (-)
XLOC_006761 si:dkey-76k16.6 coding upstream 19821 33658871 ~ 33662523 (-)
XLOC_006762 si:dkey-76k16.5 coding upstream 26255 33665305 ~ 33667922 (-)
XLOC_006763 zgc:163030 coding upstream 30886 33669936 ~ 33671694 (-)
XLOC_006764 cst3 coding upstream 36506 33675556 ~ 33683913 (-)
XLOC_006471 BX537274.2 misc downstream 23346798 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 32785478 825904 ~ 826225 (-)
XLOC_006752 NA non-coding downstream 310533 33261131 ~ 33301170 (-)
XLOC_006741 NA non-coding downstream 615207 32946711 ~ 32996496 (-)
XLOC_006738 CU019663.1 non-coding downstream 804062 32793864 ~ 32807641 (-)
XLOC_006768 BX649403.1 non-coding upstream 999579 34638629 ~ 34638746 (-)
XLOC_006769 BX649403.2 non-coding upstream 1005100 34644150 ~ 34644281 (-)
XLOC_006773 CR932983.2 non-coding upstream 1543944 35182994 ~ 35194759 (-)
XLOC_006774 NA non-coding upstream 1566247 35205297 ~ 35289437 (-)
XLOC_006775 CU138575.1 non-coding upstream 1731519 35370569 ~ 35370684 (-)

Expression


Co-expression Network