CI01000001_06121398_06124748 (TNNC1.L, TNNC1B, TNNC1, TNNC1A)


Basic Information

Item Value
gene id CI01000001_06121398_06124748
gene name TNNC1.L, TNNC1B, TNNC1, TNNC1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6121398 ~ 6124952 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_06121398_06124748.mRNA
ATGGATGACCCTGTATTACTGTCCAAACAAACAGTGGGTAAGAGTGAGACAGTATCTTGTAATTTTACGCTATCTGGCAAAACCACTTTGCCAGACTGGTGCTCTTCGTACAAATGTTTGTCCATAGTGGAGAACTTGACAGAAGAACAGAAAAATGAGTTTCGCGCTGCGTTTGACATCTTCGTGCAGGATGCTGAGGATGGCTGCATCAGCACTAAGGAGTTGGGGAAGGTGATGAGGATGCTGGGCCAGAACCCCACTCAAGAAGAGCTGCAGGAAATGGTAGATGAAGTAGATGAGGATGGAAGCGGGACAGTAGACTTTGATGAGTTCTTGGTGATGATGGTGCGCTGTATGAAAGAGGAGAGCAAAGGAAAATCAGAAGAGGAGCTGGCTGAGGTCTTCCGCATGTTTGATAAGAATGGAGATGGTTACATTGATTTAGATGAGCTGAAGAACATGCTGGAGTCGACAGGTGAGGCCATCACTGAGGACGACATTGAGGAACTCATGAAGGACGGAGACAAGAACAACGACGGCAAGATCGATTACGACGGGTGTCGAGTAAAAATCCCGCCTGACGGTCGGATTCAAAAGCCATTCCCTGACCCTGACCCAAAACAGTATCTCTGACGTCACCACACGGACATTCAATTCGGAAGCATGGAAAATTATCTACATTTCATATATTTCTGAAACTTGTTGAAATAGGTCAATGGTGTCATGTACCGCTGCCAAGAATAGTAATGTTATTTGTGTTCAAGTAAAAAACATTTTCTGTACACAAGCCGCACGTTTTGTTCTTTATTTCTTGCACAAATCTACTCAAAAAATCAA

Function

symbol description
tnnc1a Predicted to enable actin filament binding activity; calcium ion binding activity; and calcium-dependent protein binding activity. Acts upstream of or within cardiac muscle contraction; cardiac ventricle development; and response to activity. Predicted to be part of troponin complex. Is expressed in heart primordium; mesoderm; muscle; and pericardial region. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1Z; hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 13. Orthologous to human TNNC1 (troponin C1, slow skeletal and cardiac type).
tnnc1b Predicted to enable actin filament binding activity; calcium ion binding activity; and calcium-dependent protein binding activity. Acts upstream of or within cardiac muscle contraction. Predicted to be part of troponin complex. Is expressed in adaxial cell; heart; musculature system; solid lens vesicle; and somite. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1Z; hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 13. Orthologous to human TNNC1 (troponin C1, slow skeletal and cardiac type).
tnnc1 Enables several functions, including calcium-dependent protein binding activity; cytoskeletal protein binding activity; and protein homodimerization activity. Involved in cardiac muscle contraction; regulation of muscle contraction; and ventricular cardiac muscle tissue morphogenesis. Part of cardiac Troponin complex. Implicated in dilated cardiomyopathy 1Z; hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 13.

NR:

description
Troponin C type 1 (slow)

GO:

id name namespace
GO:0015629 actin cytoskeleton cellular_component

KEGG:

id description
K05865 TNNC1; troponin C, slow skeletal and cardiac muscles

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_06121398_06124748.mRNA True 837 mRNA 0.44 6 6121398 6124952

Neighbor

gene id symbol gene type direction distance location
CI01000001_06040916_06041645 NA coding upstream 78788 6040916 ~ 6042610 (+)
CI01000001_05960289_05963221 NA coding upstream 158055 5958349 ~ 5963343 (+)
CI01000001_05942155_05943721 NA coding upstream 177379 5942155 ~ 5944019 (+)
CI01000001_05933655_05938581 FLNA coding upstream 182157 5933655 ~ 5939241 (+)
CI01000001_05902661_05905496 NA coding upstream 215612 5902370 ~ 5905786 (+)
CI01000001_06297032_06300530 TNNC2, TNNC2.L coding downstream 172080 6297032 ~ 6300660 (+)
CI01000001_06303405_06305351 TNNC2 coding downstream 178453 6303405 ~ 6305351 (+)
CI01000001_06309664_06321614 SLC35C2 coding downstream 184409 6309361 ~ 6322088 (+)
CI01000001_06325915_06358454 SLC35C2, COL20A1 coding downstream 200122 6325074 ~ 6358674 (+)
CI01000001_06363645_06370085 ADNP coding downstream 238693 6363645 ~ 6370101 (+)
G16141 NA non-coding upstream 37954 6082686 ~ 6083444 (+)
G16134 NA non-coding upstream 52530 6068608 ~ 6068868 (+)
G16131 NA non-coding upstream 64050 6057139 ~ 6057348 (+)
G16112 NA non-coding upstream 112016 6008239 ~ 6009382 (+)
G16090 NA non-coding upstream 235357 5885790 ~ 5886041 (+)
G16163 NA non-coding downstream 13010 6137962 ~ 6138220 (+)
G16171 NA non-coding downstream 41740 6166692 ~ 6170565 (+)
G16172 NA non-coding downstream 51671 6176623 ~ 6177132 (+)
G16188 NA non-coding downstream 82680 6207632 ~ 6208354 (+)
G16189 NA non-coding downstream 83600 6208552 ~ 6208780 (+)
G15995 NA other upstream 406447 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 831442 5279837 ~ 5287698 (+)
G15794 NA other upstream 1056694 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 2499947 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 4450394 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 1407620 7531541 ~ 7540586 (+)
G17234 NA other downstream 1907172 8032124 ~ 8032483 (+)
G17353 NA other downstream 3091070 9216022 ~ 9228859 (+)
G17354 NA other downstream 3109511 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 3293376 9435836 ~ 9436373 (+)

Expression


Co-expression Network