LOC122323611


Basic Information

Item Value
gene id LOC122323611
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 3150077 ~ 3163642 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217578.1
AAAATCCAATTGTTTACTATAACACTTATTATTGTGGCTTAGtgtgggttttatttttattattattttgttaaagatGGGAGAGATCTTCCTGGGTGCTCCATTCAAGTCAAGTTTATTGATGTAGCGCTTTTAACCATacatattgtttcaaagcacTTAACATCAAATACaagaatagagtgtcagtaatgtataattacCAGATTTAACACTCcattttcagttaaatgaaTTTCATTATTGATTTCAGGGACAGCGTtgtccagctcagttcagttaAAATAGTGTCTGTGCAAACAAATTGAAGACAAtagctagaaattaagtgtgcCCAGCTAAACGAGGAGGAGGCCACAACGCCAAGAAACCAAAACTACAAGTATGGACAGTACACAGACATCTGTCGACGACAATGATGATTATGAATTAATCAGTtcatcagattcagattcagaaaGCCTAATAAGAGCCTGGTCTGGCATGGATTTCCGGTCTCTGCCACGTTCCTTCAATTATAGCAACAGATCATTGccgaagaaaaaaacacaatcccCAGAGCCCAGCTTTGTGTCTATGAAGAGTGACTGGTCTATGGATCCTCCACCTCTTATAAGTCATAAAAAGAAATCATCAGTTATAACAGAGCCCAGCTTTGCGTCTATGAAGAGTGACTGGTCAATGGATCCTCCACCTCTTATAAGTCATAAGAAATCATTACACTTCCGAAAAAGAAGATTAACAAGAAAGTTGTTACCCAGTACAGTGGATCAGCCAAAACTTGTGAGTCATCGACGTGAacataaaatgatcaaatcacATCTAAGAAAGAAATTTGAGCATCTGTACGAGGGAACAGCAAATCGGGGAAACCCAACACTGCTGAATgagatctacacagagctctacatcacagagagtgagagtggAGAGATCAGTAATGAACATGAAGTGAGACAGATTGAGACACAATCTAGGAGAACAGCAACAGAGGACACACCGATCAAATGCAGTGAGATCTTCAGATCTTTACCTGGACAAGACAAAGACATCAGAACTGTGCTGACAAAGggagtcgctggcattggaaaaacagtctctgtgcagaagttcatcctggactgggctGAAGGGAAAGAGAATCAGGACCACATTGATTTTGTGTTTCCTCTTCACCTTTGTGAGCTGAACATACTACATGACAAGAAATTCAGTCTAATTCAACTGATTGATTTGCTCTTTCCAAAATTACTGAAGCCAGAGACCCTTGAGCAGTCTCAGATCCTCTTTATTTGGGATGGACTTGGTGAACTTAGATTTCCTCTTAAGTTTAAACATATTAAGACATGCACTGACCCAATGACACCGGTCTCTGTAGGCTGCCTGCTGGTCAATCTTCTCAAAGGGAACCTTGTTCCTCATGCCCAGATCTTGGTCACTTCAAGGCTGAAAGATGCAGGTCTGATTCCTCCAGAACATGTACAGAAGATGTTTGAACTACATGGGTTTGATGACTTAGAGTGGGAAGAGCACATCAGAAGTAAAGTGCGTGATCAAACCATTGCTGAAAGAGCAACTGTTCACCTGAAATCATCCAGAGCCCTGTACATCATGCGCTCCTTGCCATTCTTCTGTCAGATGGCTTCCACTGTTTTAGAAGAGCTTTTTAGTAACAGTTGCACCACAGATCCTCCTCTCACCCTGACAGAGATGTTCACACATTTTCTCCTGATTCAAACGAAAAGACATGTAGAAAAGTCTGCTAAATCAAGCACTGAGGAGATCCTGAAGCTGGGTAAGCTGGCTTGGCACATGCTGGAAAAGGACACGTTGATCTTTATTGAGACGGACCAGAGAGAAACCAATACGGATCCTCTTCTTCCTGTCAATCTCTCTGATGACTGGCCCATGTTTTTCAGAGAACAAAACCTTATGGGTTTAGGTAGAATGTACCGCTTCACGCATCCCAGTGTCCAAGAGTTCCTGGCAGCTTTGTATGTTGCTGTGCACTATGAGCCCAGCAAGGGAAATGTAATGTCTTTTACACTTgcagaaaaagcacaaaagtTGTTCAAAAAAGTACCATTTGATATGCACAGAAGAGCAGTGGACAGAGCATTAAAGAGCAAAACTGGTCAACTAGACatgtttcttctctttctcttgggAATATCTGCGGGTCCAAGCAACAAGCAACTATCcagcttttttcaaaatacatcaCTTCATGTAAGGACAGAGGATGTAGTCAAATATATTATTCAGAAAATCAAGGCAAATCCATTATTTGAGATTTCAGGTAATCTCTCTCGATGTTTGGAGGAGCTTGACGTTTCCCTGCCTGTGGTTCACAAACAAGGCCGGGTTGAATTTCAAGTAGATGAGGATGTGCACATCACTCCTTCAGAGTGGTCACGTGTAGCAACCTCTCTGCTGACCTCTGAGGATTCATCACTGACATTTGACGTCAGAAAATACGCTAATGCAGATGAAGCCATTACGAGACTGCTGCCCGTCATCAAGATCTCCAGAGTCCTCagACTGGATGAAGCCACAGATCTGAGCTGGGCGCTGATCGCCTCAACCTTGAGATCACCAGCCAATCGTATTCGAGAGATTGAAATTGAGAAACAGGCAAAAAGTGATATAAACCTGAGTCTATTATCCATTGGTATGAAAAGCCCTAACTGCAAAGTGGAGATACTCAGGACACCGTATTTTGGTCATTGTAAAGATTCTGATCATCTGCTCTCCGGGATTTTATTGAACCCGACGCATTTGAGAGAACTGAACCTGAAGAGCTCATTCTTCACGAGTGACCAGACAGTGGAGAACATCTCTCAAATCTTAATGAACCCAGACTGTCATCTCCAGAAACTTgcTCTACAAGAAATGGAAACCTTAAACAGTTGTAAGGTCTTGGCCGAAGCTCTCTGTAGCAGTTCTTGTCGTCTgcgagagctggacctgagcaGATGCTATCGGAAATGTGACGATTGGGGTTTACAGCTTCTGTCCAAGGCGTTCAGACACCCCAACTTCAAAGTAACAGTTCTGAGGTTAGAATTCCATTCTATTGGTCAAGAAAAAATCTCAACATTATTCTCTGCTTTTCAAAAGAACCcttcacacctgagagagcttgAACTACGTTTCTTAATATCACCGACTCTTGATCTTCAGGAGCTTTTCTCTTTGCTGGTGAATTCTTGCTTCAAACTAGAGACGCTGCGTATAGTTCAACTACGATTTGGTACATTGCATTGGTCATTACAGGGCTGTTTTTTAAGGAGCTCAGTtgaagTAGAGGCTGATTCTCTTGAAACTCTGGCTTCAGCTCTTGGATCTTGCAGCCTCAAATCTCTGGATCTCAGCATGTGTGGCCTGACAGATTCTTCTGTGGAGCTGCTCTCTACTGGACTGAGCAAACCTGGCTGTAAACTGGAGATACTCAGGGTGACGCACTGCAGCATCACGGAAGCAGGAGCTGCTTGTTTGGCGAAAGCTCTCTCTTCAAACCCATCACACATGCGGGAAATAGACTTGAGCATCAATCCTGTTAAAGGCCCGGGATTGGACCAGCTCAGATCGGTTTTGGAAGATCCAGCAACCCGACTAGAGAGATTAATCGTGGATGGCCTAGAGGAGCAACGGGACATGGAAACTCTACGCCAACacgcGTGCAATCTGACTTGGGATCCCAACACCTCTTCTTCAAGAGTGCATGTGTCAGAGAAAGAGGAGGCTCTTGCGGTGTATCAGAGAAACCCAGAACCCGTTCCACGCCATCCAGAGAGGTTTGAAGTCCCAGGTCAAATCATGAGTAAGGAAGGTCTTAGCGGCCGTCATTTCTTCCAGCTGGAGTGGTTTGGCAGGTGGGCCACTATAGGAATGGCTTATAAAGACATAAGAAGGAAAGGAAGTTCAGCAGCCTGTAGCATTGGACTTAATAATAATTCCTGGGGCATTTTTGTGAGCAACCCCTTTCCTCTCTGTAAAGCTCTTCATGGAGGAGTAGAGATGCAGCTCCCTAACTGCTCACCCTGGAGAGTTGGGGTCTATCTGGACTGGGCGGCAGGAACTCTCTCCTTTTACAACACCACCACATGTGACAAGACTGAACTCATTCACACCTTCCGTGCTAAGTTCACTCAGCCTCTCTTTCTTCTGGTCAGTATAAGTGCTGGAGCTAAGATCTTACCAGACGTGCCTCCTCCTGTCTGTGTCCATGACCATGATCCCTCGGATATGTTTAGGGGCTACAAGGACTGTAAAGGATGTAACGGATCAAAGGCTTGCTAGATAATCCAGCGTGCTCTCCTTGAGTAGATGAGCTGATGGTAGTGGTATCGTAATAGTCATAGTGCTCGatattttgaaattgagatgTATATATCATCTGTacgctgaataaataagctttgcattgatgtatggtttgttaggttaggctattactacaaatagacctgttttgtggtccagggccacagagagagagagagagagagagaacaggagaTCCACCAGAGGGAGCCATTTGCTTGAAAAactgatgttaaaaaaacaatctgTCATCAGTTACTCACCCCTCATGTTCATTTTTGTAGTGAATTATACTTTTAagatcaaaatatcttttttggaacaacatttttcCATTGAAGTACAGCGAGATGGCTTTCAGGACAGTGATGTACAGTAAAATCAGGAatttagtgcatttattttacactgttCTACTGGATAAGTAGTAGTGTTAAAAACTACATCCTGAATCATTTTTACTCATCAAATGTGCCTTTTTGCAAAGATGCAAGGCTCTAAGATCACAAGACCTTGCAATTTTTTGgtaaaaagttatataaaacCCCTCAACCTTTACTGCAATTCAGTactttgtataaataaatgtaatgaccAACGTTGTCTGTGTGTAATAAAGTGCTCATCTAAGCGCT

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko05163 Human cytomegalovirus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217578.1 True 4961 mRNA 0.43 15 3150077 3163642

Neighbor

gene id symbol gene type direction distance location
edn2 NA coding upstream 228058 2919368 ~ 2922019 (+)
hivep3a hivep3a,LOC107708727,LOC107687396,LOC107689544,LOC107732924,LOC107595896,LOC107569862,LOC107732908 coding upstream 235368 2894544 ~ 2914709 (+)
ptprua ptprua,LOC107732911,LOC108272369 coding upstream 585521 2380621 ~ 2564556 (+)
gmeb1 gmeb1,LOC107556889,LOC107595901,LOC107708700 coding upstream 808954 2331733 ~ 2341123 (+)
LOC122324256 NA coding upstream 819801 2330141 ~ 2330276 (+)
tbxta ta,LOC107700831,LOC107689566,LOC108411273,LOC104926085 coding downstream 322860 3486502 ~ 3491224 (+)
nr0b2b NA coding downstream 340467 3504109 ~ 3508711 (+)
paqr7a LOC107567589,LOC107754930,LOC107689535 coding downstream 403372 3567014 ~ 3570984 (+)
trnau1apa LOC107754918,LOC107689564,LOC107567591 coding downstream 414336 3577978 ~ 3582390 (+)
stx12 stx12,LOC107700764,LOC107712603,LOC107689533 coding downstream 419452 3583094 ~ 3590653 (+)
G130082 LOC103461248,LOC107835431,LOC106945151 non-coding upstream 306 3149134 ~ 3149771 (+)
G130079 NA non-coding upstream 46490 3102944 ~ 3103587 (+)
LOC122323349 NA non-coding upstream 104193 2986542 ~ 3045884 (+)
G130022 NA non-coding upstream 215630 2930427 ~ 2934447 (+)
G130020 NA non-coding upstream 222573 2927288 ~ 2927504 (+)
LOC122324184 NA non-coding downstream 189377 3353019 ~ 3368417 (+)
G130141 NA non-coding downstream 276071 3439713 ~ 3440187 (+)
G130150 NA non-coding downstream 301597 3465239 ~ 3541394 (+)
G130138 NA non-coding downstream 333057 3496699 ~ 3498554 (+)
G130168 NA non-coding downstream 352818 3516460 ~ 3518398 (+)
G130077 NA other upstream 56363 3093067 ~ 3093714 (+)
phactr4a phactr4a,LOC107550657,LOC107687470,LOC107595895,LOC107689543 other upstream 171661 2959593 ~ 2978416 (+)
serinc2 serinc2,LOC107732928,LOC107689546,LOC107687316,LOC107708726,LOC108272915,LOC103358775 other upstream 256476 2889623 ~ 2893601 (+)
LOC122323290 NA other upstream 262449 2885413 ~ 2887628 (+)
G129993 NA other upstream 363729 2785925 ~ 2786348 (+)
sh3bgrl3 sh3bgrl3,LOC107700758,LOC107689536,LOC106570239,LOC105933927,LOC103368842 other downstream 408620 3572262 ~ 3576193 (+)
G130208 LOC107714468,LOC107559403,LOC107569308 other downstream 596225 3759867 ~ 3760985 (+)
G130372 mc5ra,LOC107746932,LOC107552309,LOC107675655,LOC107754914,LOC107566557 other downstream 1081126 4244768 ~ 4259085 (+)
ptpn2b ptpn2b,LOC107738314,LOC107552315,LOC107672871,LOC107748370,LOC107666587,LOC108438851 other downstream 1230943 4394585 ~ 4406579 (+)
znf706 znf706,LOC107672881,LOC103394271,LOC107748367,LOC107552318,LOC107698658 other downstream 1296233 4459875 ~ 4464904 (+)

Expression


Co-expression Network