s100u (s100u,LOC107716592,LOC107670009,LOC107578875)


Basic Information

Item Value
gene id s100u
gene name s100u,LOC107716592,LOC107670009,LOC107578875
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18341358 ~ 18349024 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217625.1
tcacggaAGAGATTCGGCAGCGGTTCGAGTctgacaagttttttttttcttttgaggtaggaaagaaaagggaaaggaaaaaaaagagaggtttAACTGCAGCTACTGCGAACTGTCAACCCGCGCTGTCCCCATTTTAGGAGTGAAAGCAAAGATGGAGGCAGCAATTACAACCGTGGTGAGCGTGTTCCTGAAGTCATCCAAGGGCAAGGAAAACCTCGGCGGGAAGGAGTTCCAGAGCCTCGTGAAGAGCCAGCTGAAAAACATTCTGACGGGCTCCGAGGACAATGAGGCAGTAAAAAACATGCGTCAACAGCTTGACAACAATCAGGATGGGAAGGTCAGCTTCCAGGAGTAtatgaatctgattggctatcTTGCACAGGCTGTCAGCGAACAGCGTTCTTTGGAAAATGAAACACAACCGGAGAGTTCAACCCAGGAGACGCAGGCCGAAGCGGCAGCCAATGCACAGGCAGAGCCGCCGAAGGCAGAGCCGCTGAAAGCAGAGCCGCCGAAGGCAGAGCCGCCGAAAGCAGAGCCGCCGAAGGCAGAGCCGCCGAAGGCAGAGCCACAGGCGGCAAAAGAGGTGGAGAAAGAAGACAAGCCAGTGACCGAGGAGGCAGCGGCCGAAGAGCACAAGccagaggaagagaaaaaaacagatgtgGAACAGGAAGGGGTGAAGGTTGAAGAGAAGAATAAAACAGAGGAAGCGTCGTAGGAGCTCGAGGAAGTGGAGATTGTCGCATCTCAAATgcttctttgtttgttttgttttgtcactttcattattgtgatattttaatacatatatatgacaCCTGGCCAATACaccacaattttcttttttaccgCAAAGAGCCGTAGCCCTCTcgttacagtttttttttacaatggctaGGAAATGTTTCTCAATGCCTTTCAAAACTCTTCACATTGTACTCCTTAGCAACATTCAGCTTTGCACAGCAGTACATTTCACATCCAAAATGCACTAATAACAGCAAAACACTTCATGTCATAACTCTAGTTAGGTTTGTCACCCAATAAACACCATTTATAATGAAACCACGATTATAACACCAGATTAAAACTGCCTCAAAACTGTTGGAAAAGTGGCATGTAAAATGTACCATTACCTAGGGTTTAAACCATTACcatggtttaaaatgacattaaccAGGTTAATAGCAGTGTGAAAAGAACTTTTGTCTATCATAAAAGACCAAGAGATGTAGCATGTAAGTTTTCTCATCTAAAATCAATTTTACAAACAAGAACGATGCCTCTGCTGTTTAGATTTCACTGCAGTAGGCTACATGTTACGTGGCTCACGTTTACATTTGATTACAGTATAAAATGATGACCTACTTTTTGTAGATGAATGAAAGACTAACGCCTGTTCAGATATTTAACTACTTTAAAGTTTTTGATAGTATctaattttgtacattttggaACATATTTAATTCTGTAGAAGTGTAGCAAATTGACGTCTTTCTATTTTGTATTATGTTAAGTTTTGAACGCGTTTAAAAATGTGCcggcattaaatgcattttgtgccAAAGCAGCGGAAAATGATCCTGCAGTTTAGTCCATATAGACTGCTAATTACAATGTgaagagtttttaaaaagtgacctATTGAGAAATGTCAACAGGTCCTagcaattgtaaaaaaaaaaaaaaaaaaaaaactgtaatactaaTTTCTCTTTGTATGCACATCAGTTCATGCCTGTGATTTATTATgtactaatattttataatagaaaTTGGCAATAGCCGCAAATGTGACAAATGGCCAAAGAGGTGCAATAACTAATCACTACGTCCTTTCGTTTGAGCCAGATTTGTTGTAAGGGTACTGCAACCACTGTGTCCCCTCCAATATCTTTACAAATCATCCACGAATGAAGAACAGACACGGTTTTTATAgcataaatgttgaaaaagacGCATCATTTTTAAGTGTCCATtatgtttactttttgtttgtgcCACCTTCTAAGGACAGGGTTACTTAGTCGACTCCGGTGCTAGTCGTAAATGTACTATGTATTTTCCAGTGTTGCAGAAGCACATAAAGAGCAAGCTTTCACCTCTCTTTTGTTTGATGAAATGTCATTCTGCCGGAATTTAACCATACTGCATCACCATTTAAATGTGGGACTTGCATTTGTGGCGCACATGGGAACACTATGCAGTCCACGTACTTTGTTGTTCACATTTCTGGGCCTCGTTTGCATGAGAATAAACAAATTTGCTTTTGAA

Function

symbol description
s100u Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in cytoplasm. Is expressed in gill and gut. Orthologous to human S100A16 (S100 calcium binding protein A16).

NR:

description
PREDICTED: coiled-coil domain-containing protein 8-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217625.1 True 2280 mRNA 0.41 3 18341358 18349024

Neighbor

gene id symbol gene type direction distance location
s100s s100s,LOC108272970,LOC103039105,LOC108433762,LOC107559723,LOC107716593,LOC107670010 coding downstream 1846 18335056 ~ 18339512 (-)
pygo2 LOC107716595,LOC107589423,LOC107729895,LOC107670005,LOC107693316 coding downstream 13088 18322811 ~ 18328270 (-)
cgnb LOC107729898,LOC107693317,LOC107589422,LOC107670001,LOC107716597 coding downstream 19639 18303738 ~ 18321719 (-)
tuft1b LOC107693318,LOC107729883,LOC107589508,LOC107732690 coding downstream 60242 18269171 ~ 18281116 (-)
ubap2l ubap2l,LOC107589420,LOC107669979,LOC107599491 coding downstream 74110 18245489 ~ 18267248 (-)
s100a11 LOC107589424,LOC107729880,LOC107693277,LOC107669999,LOC107559722 coding upstream 1593 18350617 ~ 18352464 (-)
pbxip1a LOC107589426,LOC107729890,LOC107693313,LOC107716591 coding upstream 3960 18352984 ~ 18372251 (-)
prcc LOC107753464,LOC107693312,LOC107589427,LOC107670020,LOC107716568,LOC107577543 coding upstream 26992 18376016 ~ 18380566 (-)
mrpl24 mrpl24,LOC107669969,LOC107559719,LOC107693309,LOC107580210 coding upstream 32427 18381451 ~ 18383179 (-)
mindy1 fam63a,LOC107559718,LOC107669987,LOC107693308,LOC107589430,LOC106569905 coding upstream 44982 18394006 ~ 18403746 (-)
G134332 NA non-coding downstream 37701 18290057 ~ 18303657 (-)
G134334 NA non-coding downstream 72298 18268305 ~ 18269060 (-)
G134319 NA non-coding downstream 323096 18017969 ~ 18018262 (-)
G134317 NA non-coding downstream 374819 17965575 ~ 17966539 (-)
G134309 trim46b,LOC107678799,LOC107599500,LOC108241966 non-coding downstream 393524 17938947 ~ 17947834 (-)
G134365 LOC107726654 non-coding upstream 68002 18417026 ~ 18417853 (-)
G134411 oxr1b non-coding upstream 108141 18457165 ~ 18460899 (-)
LOC122324145 NA non-coding upstream 174176 18523200 ~ 18532017 (-)
G134426 NA non-coding upstream 184149 18533173 ~ 18533500 (-)
G134428 NA non-coding upstream 223044 18572068 ~ 18586326 (-)
cks1b cks1b,LOC107753514,LOC107589507,LOC107599584,LOC108433716,LOC103394526 other downstream 99745 18225609 ~ 18241613 (-)
si:dkey-266f7.5 NA other downstream 153329 18169523 ~ 18188029 (-)
G134318 NA other downstream 329959 18010882 ~ 18011399 (-)
s100a10a s100a10a,LOC107599503,LOC107693282,LOC107589481,LOC107589504,LOC103356278 other downstream 405922 17929689 ~ 17935436 (-)
LOC122324164 LOC107589398,LOC107693356,LOC107724088,LOC107589397,LOC107599520,LOC107665487,LOC107724089 other downstream 725081 17613446 ~ 17616277 (-)
LOC122324083 LOC107589493,LOC107693246,LOC107734014 other upstream 338325 18687349 ~ 18691249 (-)
smim13 si:dkey-206d17.5,LOC107669968,LOC107559689,LOC107551766,LOC107734024,LOC106589022 other upstream 527590 18876614 ~ 18933228 (-)
khdrbs3 khdrbs3,LOC107554584,LOC107566726,LOC107687064 other upstream 1193758 19542782 ~ 19652807 (-)
LOC122324012 NA other upstream 1321763 19670787 ~ 19688386 (-)
G134895 NA other upstream 2032996 20382020 ~ 20382727 (-)

Expression


Co-expression Network