s100a11 (LOC107589424,LOC107729880,LOC107693277,LOC107669999,LOC107559722)


Basic Information

Item Value
gene id s100a11
gene name LOC107589424,LOC107729880,LOC107693277,LOC107669999,LOC107559722
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18350617 ~ 18352464 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217630.1
tttttttgttttccgcTGAGTTTGACCGTCGATGAAGAGAATATAAGGTGAGATGTGGTCATTTACACACCACTCCAGTCAGAACATCATTCCTTGCCTCAGTCACTTAACTGTCCCGCTCCCGAAGTCATGGAATCTGCCATTAATGTACTCATCTCCGAGTTTAAGACTTACGCAGGGAAAGACGGCTCTGTGCACACTCTGAGCAAAGAGGAGTTTCAGAGCCTGGTCACATCCCAGCTACCAAACTTGGTAAAGAATGCCTCTGACCCAGCCACCATTGATCAGCTCATGAAGTCGCTGGACGAGAATAACGACGGAGAGCTGACGTTCCTGGAGTTCTGGCAGCTGATTGGCAGCGTGGCGAACCAACATGGTGGATTTAGCCAATAAAGAGACCTGAAGTATTAGTTCACTTGAAGAAAATCActttcatttgactttttttatgtaattaaaacattgcaCAGTTAAAGATTGTCCGAAGCAGGTGACGGCAAATAAAAGAAAGTGCTGTTTTATTCTCGA

Function

NR:

description
PREDICTED: protein S100-A13-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217630.1 True 528 mRNA 0.44 3 18350617 18352464

Neighbor

gene id symbol gene type direction distance location
s100u s100u,LOC107716592,LOC107670009,LOC107578875 coding downstream 1593 18341358 ~ 18349024 (-)
s100s s100s,LOC108272970,LOC103039105,LOC108433762,LOC107559723,LOC107716593,LOC107670010 coding downstream 11105 18335056 ~ 18339512 (-)
pygo2 LOC107716595,LOC107589423,LOC107729895,LOC107670005,LOC107693316 coding downstream 22347 18322811 ~ 18328270 (-)
cgnb LOC107729898,LOC107693317,LOC107589422,LOC107670001,LOC107716597 coding downstream 28898 18303738 ~ 18321719 (-)
tuft1b LOC107693318,LOC107729883,LOC107589508,LOC107732690 coding downstream 69501 18269171 ~ 18281116 (-)
pbxip1a LOC107589426,LOC107729890,LOC107693313,LOC107716591 coding upstream 520 18352984 ~ 18372251 (-)
prcc LOC107753464,LOC107693312,LOC107589427,LOC107670020,LOC107716568,LOC107577543 coding upstream 23552 18376016 ~ 18380566 (-)
mrpl24 mrpl24,LOC107669969,LOC107559719,LOC107693309,LOC107580210 coding upstream 28987 18381451 ~ 18383179 (-)
mindy1 fam63a,LOC107559718,LOC107669987,LOC107693308,LOC107589430,LOC106569905 coding upstream 41542 18394006 ~ 18403746 (-)
sf3b4 sf3b4,LOC107669988,LOC107716574 coding upstream 61760 18414224 ~ 18416303 (-)
G134332 NA non-coding downstream 46960 18290057 ~ 18303657 (-)
G134334 NA non-coding downstream 81557 18268305 ~ 18269060 (-)
G134319 NA non-coding downstream 332355 18017969 ~ 18018262 (-)
G134317 NA non-coding downstream 384078 17965575 ~ 17966539 (-)
G134309 trim46b,LOC107678799,LOC107599500,LOC108241966 non-coding downstream 402783 17938947 ~ 17947834 (-)
G134365 LOC107726654 non-coding upstream 64562 18417026 ~ 18417853 (-)
G134411 oxr1b non-coding upstream 104701 18457165 ~ 18460899 (-)
LOC122324145 NA non-coding upstream 170736 18523200 ~ 18532017 (-)
G134426 NA non-coding upstream 180709 18533173 ~ 18533500 (-)
G134428 NA non-coding upstream 219604 18572068 ~ 18586326 (-)
cks1b cks1b,LOC107753514,LOC107589507,LOC107599584,LOC108433716,LOC103394526 other downstream 109004 18225609 ~ 18241613 (-)
si:dkey-266f7.5 NA other downstream 162588 18169523 ~ 18188029 (-)
G134318 NA other downstream 339218 18010882 ~ 18011399 (-)
s100a10a s100a10a,LOC107599503,LOC107693282,LOC107589481,LOC107589504,LOC103356278 other downstream 415181 17929689 ~ 17935436 (-)
LOC122324164 LOC107589398,LOC107693356,LOC107724088,LOC107589397,LOC107599520,LOC107665487,LOC107724089 other downstream 734340 17613446 ~ 17616277 (-)
LOC122324083 LOC107589493,LOC107693246,LOC107734014 other upstream 334885 18687349 ~ 18691249 (-)
smim13 si:dkey-206d17.5,LOC107669968,LOC107559689,LOC107551766,LOC107734024,LOC106589022 other upstream 524150 18876614 ~ 18933228 (-)
khdrbs3 khdrbs3,LOC107554584,LOC107566726,LOC107687064 other upstream 1190318 19542782 ~ 19652807 (-)
LOC122324012 NA other upstream 1318323 19670787 ~ 19688386 (-)
G134895 NA other upstream 2029556 20382020 ~ 20382727 (-)

Expression


Co-expression Network