psmg2 (psmg2,LOC107738327,LOC107748372,LOC107672829,LOC107550101)


Basic Information

Item Value
gene id psmg2
gene name psmg2,LOC107738327,LOC107748372,LOC107672829,LOC107550101
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 4408733 ~ 4410934 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217673.1
GCAACGTCAGGTCCTTTTTCCCCAAAGCGAAGGaaattgaaagtaaaaatcACTACAGAGCCACGGCTATTCATCTACATTTACTTTGTAAATCCGACATAAACCgtcttaaaaatgttcattccGTCGGGGGAGGATGTTCCTTCGTTTAAAGGCTTTACTCTGATAATGCCCGCTGTGTCCGTTGGAAACGTGGGGCAGCTCGCCGCGGATCTTCTCATCTCCACTCTGAATATGCCCCGAGTGGGGTACTTCCACACGCACTGCCTCACGCCCATGGTGGGAAACAACCCGTACGCCACCTCGGCCGAGGACGCGGCGCAGCTCAGCACCGGCGCCGAGGtgtaCTCTCACAGGGACCTAAAGCTGGCCGTGCTGCAGATCAGGACACCCATCATTCAGACAAAGGTCAAGTCCTTCCGCAAGCTGATGGTTTCCTGGATCAAGAGCAGCGGGTTCCTCAGGAGCGTGCTGCTGTCCAGCAGTCACTCGTATCACAGAGACGACCAGCAGCTTCACGGCGCTCCTCTGCGGTACCTGCTGACCCCGGCTCTGCAGAAGCAGGAGGCTCCGAGGGTGGAGGAGCTGGGCTGGACGGAGATGGAGAGGATCAGCGCGTTTCCCGGGATCTCTGACTCAGAGCAGCGCCTCTACATTCCCGGAGGAGGAGTGACCAAAGCCCTTTACACGGACTGCTGCACAGAGGGCATCTCCATGGCAGTAATGCTGATCTTCTGCTCCGAAGGAGACAACATCCCCGACGCGTTTGCTCTTGTCAACCATCTCAACGACTGGCTTCATCTGCTGGAAAAACCTACACAGGGGTCGGTGCAGTGGCGAGTTCCTCCGTCATGGAGGCTGCTGTTTGGCAGCGGTATCCCACCTCTTCTCTTCTGAACCAGAGAGATCCCCGATGGACTGACGATTGAGCGGCtgaatacacattttgcttgtAAATAAGTGAGATAGCACCGAAATAAAATAAGCTGTAGTATTATTTTTGCCAAAAAATG

Function

symbol description
psmg2 Predicted to be involved in chaperone-mediated protein complex assembly and proteasome assembly. Predicted to be active in cytosol and nucleus. Orthologous to human PSMG2 (proteasome assembly chaperone 2).

NR:

description
proteasome assembly chaperone 2 isoform X1

GO:

id name namespace
GO:0043248 proteasome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11876 PSMG2, PAC2; proteasome assembly chaperone 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217673.1 True 1013 mRNA 0.54 7 4408733 4410934

Neighbor

gene id symbol gene type direction distance location
seh1l seh1l,LOC107668717,LOC107746927,LOC107748371,LOC107666589 coding downstream 21118 4378514 ~ 4387615 (-)
ldlrad4a ldlrad4a,LOC107668709,LOC107675658,LOC107566561,LOC107746928 coding downstream 32373 4303415 ~ 4376360 (-)
rnmt rnmt,LOC107668718,LOC107754922,LOC107566559 coding downstream 111976 4285292 ~ 4296757 (-)
mc5ra mc5ra,LOC107746932,LOC107552309,LOC107675655,LOC107754914,LOC107566557 coding downstream 141595 4244693 ~ 4267138 (-)
cthrc1a cthrc1a,cthrc1,LOC107746934,LOC107668704,LOC107675657,LOC107754923,LOC108438867,LOC108257304 coding downstream 191020 4211439 ~ 4217713 (-)
grhl2b grhl2b,grhl2,LOC107738316,LOC107672862,LOC107748368,LOC107698657,LOC107552317,LOC107550099 coding upstream 21209 4432143 ~ 4450461 (-)
spag1a spag1a,LOC107738319,LOC107672845,LOC107748364,LOC107698654,LOC107550092 coding upstream 118590 4529524 ~ 4537983 (-)
adck5 adck5 coding upstream 162514 4573448 ~ 4580921 (-)
LOC122323748 pqlc1,LOC107698648,LOC107672885 coding upstream 296388 4707322 ~ 4735660 (-)
LOC122323359 si:dkey-222b8.4,LOC107672841,LOC107698638,LOC107563916,LOC107745050 coding upstream 398180 4809114 ~ 4820027 (-)
G130494 NA non-coding downstream 339 4408194 ~ 4408394 (-)
LOC122323668 NA non-coding downstream 2833 4404017 ~ 4405900 (-)
G130465 NA non-coding downstream 108407 4298509 ~ 4300326 (-)
G130463 NA non-coding downstream 120863 4287488 ~ 4287870 (-)
G130459 NA non-coding downstream 141309 4267179 ~ 4267424 (-)
G130482 NA non-coding upstream 58825 4469759 ~ 4484396 (-)
G130476 pabpc1b,LOC107698655,LOC107748365,LOC107550093,LOC107738317 non-coding upstream 79326 4490260 ~ 4491487 (-)
G130690 NA non-coding upstream 327871 4738805 ~ 4744555 (-)
G130702 NA non-coding upstream 361886 4772820 ~ 4903960 (-)
G130708 NA non-coding upstream 380916 4791850 ~ 4922621 (-)
tmem222b tmem222b,LOC105903612,LOC107550652,LOC107754919,LOC107567586,LOC107700749 other downstream 856908 3537441 ~ 3551825 (-)
kdf1b LOC107700730,LOC107712602,LOC107550653,LOC107754920,LOC107567594,LOC107689538 other downstream 894054 3508834 ~ 3514679 (-)
zdhhc18b zdhhc18b,LOC107700701,LOC107737765,LOC107689541,LOC108413341,LOC107550656,LOC107570996 other downstream 1028806 3363481 ~ 3379927 (-)
LOC122323345 fam46bb,LOC107712594,LOC107700817,LOC107737782,LOC108413340,LOC103370123 other downstream 1084905 3313389 ~ 3323828 (-)
G130083 LOC103461248,LOC102786159 other downstream 1258944 3149154 ~ 3149789 (-)
polr2k NA other upstream 129045 4539979 ~ 4541629 (-)
G130696 NA other upstream 332638 4743572 ~ 4941832 (-)
LOC122323502 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other upstream 676310 5087244 ~ 5222883 (-)
G130744 sema4ab,LOC107702572,LOC107672813,LOC107598230,LOC107731578,LOC107705066 other upstream 730571 5141505 ~ 5260164 (-)
G130763 NA other upstream 834419 5245353 ~ 5252189 (-)

Expression


Co-expression Network