nr1d2b (nr1d2b,LOC107565234,LOC107700655,LOC107719847,LOC107569910,LOC107743928)


Basic Information

Item Value
gene id nr1d2b
gene name nr1d2b,LOC107565234,LOC107700655,LOC107719847,LOC107569910,LOC107743928
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 1970767 ~ 1978340 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217707.1
CTCTGCGTTAAACCTGCGCTGATACACATCTCTTCCGTCGACTTACTAAGCTATCATAGTCTTTAATAGACGCCAAACCCTTCCGATTCAGACTCTTTAGCCGGTGCGGTTTTTGGACGAATCTAGTTATTTCAACTAACACCGGCGTATGTattcattactgtttttataaacGCCtgagattttgtttttttcagctttttttttttccaagcaacGCGGCGTTAATTGTTTGAGATTATCTGGTAGGTTAGTTAGAAATGTTCCTCAGGTAGTGTCTTGTTGTACTCGGTTCACAGGATCACACAGCGACTAGATAGTTGCTGGAAACTGAGTAAAAacggcacaaacacacaggtgaCTGCGGCTCCAAGCTGTCGGAGGACATGGATTTCACAAAGGCTGGTGGAGTTATAGCCTACATTAGCTCCGCGAGCTCGGCCTCCAGTCCAGAGTCGTGCCACAGCGACTCCTCCAACAGCAGCTATCAGTCCTGCTCTCCACCCCACGCGGGGCAGGGCCAACAGGGCGAGGCTCTTGCTGTGGCCCCTCAGTCCCGCCCACCGCGGCACAGCGGAGGAAAAGCACGCTCGCCCCCCACAGCCAAAAGTGGCATTACAAAGATTAACGGGCTGGTGCTGCTATGTAAAGTGTGTGGAGATGTGGCGTCAGGATTTCACTATGGCGTTCACGCCTGTGAGGGATGCAAGGGTTTCTTCAGGAGGAGCATTCAGCAGAACATTCAGTATAAGAAGTGCCTTAAGAATGAAAGCTGTCCCATCATGCGCATCAACAGGAACCGATGCCAGCAGTGCCGTTTTAAGAAGTGTCTGCTCGTGGGCATGTCCAGAGACGCTGTGCGTTTCGGCCGGATTCCCAAACGAGAGAAGCAGCGCATGCTGCTCGAGATGCAGAATGCCATGAACAACATGATGAACAACAGCCACGGCAACCAGCCGCTGAGCAGCCAGCCATCAGCCAGCGATGCAGCTTCAGACGACAGCAGCTCCGGCCCTTCCTCCCGTTCCCCCTCCACCTCCCCCCGGAGCCACAACTCTGAACCCAGCCCCGACCCAGAGCCTCTGAGCACCATGGACACCAGCTCCAGCTCGGACTCCTCCAGCTCCACTGACAGCGGCGAGGAGGAGGTCATCGGCACAGTCACTAGAGCACACCAGGAGACCTTCATGTACAATCAGGAGCAGGCCAACTTGCCTTCAGAGGCCCCCAACAACTACAGCCACTGCTCAGAGAAACCTCAGGAGGTCTGGAACCAGCAGAGCAATGCATTCTCAGAGAGTGGACAGAAGACCCCATCAGGCTGTGCTCCGCAGGGGCCTGAAGGCTTGGGCTGTCCTGTCAGACTGCCCAACAGCAACTCCGCGGGGCCATCCATGCAGAACCTCTGTCTGAGAGCTCATAATGACAATGAAATTCGTGTCAACGGCAGCTGTAGTGTCCCAATATTTTCAAGGATTAACAGGATGCACCTGGTTTGCCCCATGAACACATCGCCATATGTGGATCCTCAGAAGTCGGGTCACAGTATTTGGGAAGAGTTCTCCATGAGCTTCACCCCAGCTGTCAGAGAGGTGGTGGAATTTGCAAAACGCATCCCAGGATTCAAAGAGCTGTCCCAGCACGACCAGGTCAGCCTGCTGAAGGCCGGCACCTTTGAGGTGCTGGTGGTGCGCTTTACATCCCTGTTCGACGTGAAGGAGCGCACGGTTACATTTCTGAGCGGCAGGAAGTACAGCGTGGAGGCGCTTCGCTCGATGGGCGCTGGAGATCTTCTCAACTCAATGTTTGACTTCACAGAGAAGCTACAAGCGCTGAACCTCAGCGAGGAGGAGATGAGCCTCTTCACGGCTGTAGTGCTGGTGTCTGCAGATCGCTCTGGTCTCGAGAACGTCAACTCGGTTGAGGCCCTTCAGGAAACTCTGATACGAGCTCTGCGCAGCTTGATCACCAAGAACCACCCCAATGAGATCGCCATCTTCACTAAACTGCTCCTTAAACTGCCGGACCTGCGCTCGCTCAACAACATGCACTCTGAGCAGCTCTTGGCCTTCAAGGTCCACCCCTGACCACCCACCAACCCCGTAACTGTGGACCACACCCCCCATCCATCTCCAAAGCCTCCCGTTTAGACCGTGGGGAACTGTTGTTACTCGGtgcccccctttttttttttttttttttttgacacttcTCCCCCTGACTTTCAAAGCATTGCTGGTTAAAAATGGAGGTAGAGGGGGGGCAGATACTTAAGAAGTCATTGTACTGTAAAACGCCTCTGCTCGTGCTAACGCACACGACTCGCTGACACAAACTGGAGGGGTTTCGTTGTAGATGCTTACAAGAGTTTGTATGATTACGCGGTTTGTGTGTGCGCAGAGGCATCTTGAATTGAGTTTTTGGATTTATAAATCTGCCTGTGCAATAAGTGACGCGTTCACTGGTTTTGTGATTTGTTCCTTGTTGGTCTTTTAGTACTTTCAGAGAAGAGGAAGTAAGGTGTTTTGTGGGCCGTATGAATGCTGTGTGTTGCTAAGGGGAGATTATGAAGGGATATtcccacaaacaaacaagaaaataagTGCACAGAGCACGGTTTAGCATCCATTCTAattaaaagagaagaaaaactaagaaaTGTAAGAATGTGGAACAAGCTGCTAATCTGAGCTTTTTTGGCAGAAAGACACAGGAATGTTTAATTGATAGAtctatttttgtagtttttttttggcttctaaCCTGTAATTAAATGCAGAGGAAGCCACTCTTAGGCTGCGTTCCAAAACACGCTAATGCAGCCCGTGGCACGCTGATGTTGTTGTATTCAGCGGACATTGACAAACTGTCTTTTTACTGTCAGTTTTCTCTTCCAGGTCAACTACTGCAATGATGGAGCAACAGCTTGAAGGGAGTCTTGATGAGCAATTTGAAATTAGTTGACTGTTGACACATTTATAGCTCTCTACCTGACTAGTGGTGCATTTGGATTATTAGCACAAACACAGAAAGTCGACTGTTGCCCGCTTGAGTGTTTGTTAACTACGAGATCGAATCAGACCGCAGGCTTGGCCAAGCGTTTGCATTCTAGCATAGGGTATGTTTCTGAGTTTAGATCTGCGTAGTGGTACATCTCTGTATATTTCCTGATTCGTAGGGCTTTTAGTAATGACACAGTTTTTGATGATGCTAAATGACAAAAGAGGAGTAGAACGTAACTCGTTTTATCACTGTAAGACATGTGCACGCTTCTCCTCTGTACAGATGGGACTCAAAGCCATCCTCAGCGATGTCATAATATAGGCCACACCCTAACTGACACCTGACACCTTCACGCATCTGTATGGGTGATCATTTCAGGCTGAATATTTATgacgatttttttttcctcttcaaataattgtaattctgttcattttccttttcaaaatgatggtttttttttgcttttggctAAGTCTGTTCAGTGAAAGTTCTTGTAGAATAATTGTATATCTGTGTGATCAGCTGCAGTAAGCAAATAGTGTGCATACTCGAGCGCCACTGGAccagacaggaagaggaaacGGGAAACGACCCAAAACTCCACCAAGTAACACCGGCAATGCCTCTCATCACCATGCCAGCTCTGGGCATCTGAACTCTTCTCGGGTCGGTTTTGATATCAAAGCTGCGGTCGGTGAATAGTCAAGAAAAGAAGTATCTTTTGTTTGGTGTTGGTGTTTCTCTCTCATTGTTTGGCCTGTGGCTCACTCAGTGTCATTGTTGTGTTGCCATAATCCAGTCTGTCAGTCTTCTTCTGTGAAAGCATTGTATGATAGCTAGatttctatatatctatatataaatatataatataaatacatataaaataagaaaataaacagataaatgctAAACTCA
>XM_043217708.1
CTGCGTTAAACCTGCGCTGATACACATCTCTTCCGTCGACTTACTAAGCTATCATAGTCTTTAATAGACGCCAAACCCTTCCGATTCAGACTCTTTAGCCGGTGCGGTTTTTGGACGAATCTAGTTATTTCAACTAACACCGGCGATCACACAGCGACTAGATAGTTGCTGGAAACTGAGTAAAAacggcacaaacacacaggtgaCTGCGGCTCCAAGCTGTCGGAGGACATGGATTTCACAAAGGCTGGTGGAGTTATAGCCTACATTAGCTCCGCGAGCTCGGCCTCCAGTCCAGAGTCGTGCCACAGCGACTCCTCCAACAGCAGCTATCAGTCCTGCTCTCCACCCCACGCGGGGCAGGGCCAACAGGGCGAGGCTCTTGCTGTGGCCCCTCAGTCCCGCCCACCGCGGCACAGCGGAGGAAAAGCACGCTCGCCCCCCACAGCCAAAAGTGGCATTACAAAGATTAACGGGCTGGTGCTGCTATGTAAAGTGTGTGGAGATGTGGCGTCAGGATTTCACTATGGCGTTCACGCCTGTGAGGGATGCAAGGGTTTCTTCAGGAGGAGCATTCAGCAGAACATTCAGTATAAGAAGTGCCTTAAGAATGAAAGCTGTCCCATCATGCGCATCAACAGGAACCGATGCCAGCAGTGCCGTTTTAAGAAGTGTCTGCTCGTGGGCATGTCCAGAGACGCTGTGCGTTTCGGCCGGATTCCCAAACGAGAGAAGCAGCGCATGCTGCTCGAGATGCAGAATGCCATGAACAACATGATGAACAACAGCCACGGCAACCAGCCGCTGAGCAGCCAGCCATCAGCCAGCGATGCAGCTTCAGACGACAGCAGCTCCGGCCCTTCCTCCCGTTCCCCCTCCACCTCCCCCCGGAGCCACAACTCTGAACCCAGCCCCGACCCAGAGCCTCTGAGCACCATGGACACCAGCTCCAGCTCGGACTCCTCCAGCTCCACTGACAGCGGCGAGGAGGAGGTCATCGGCACAGTCACTAGAGCACACCAGGAGACCTTCATGTACAATCAGGAGCAGGCCAACTTGCCTTCAGAGGCCCCCAACAACTACAGCCACTGCTCAGAGAAACCTCAGGAGGTCTGGAACCAGCAGAGCAATGCATTCTCAGAGAGTGGACAGAAGACCCCATCAGGCTGTGCTCCGCAGGGGCCTGAAGGCTTGGGCTGTCCTGTCAGACTGCCCAACAGCAACTCCGCGGGGCCATCCATGCAGAACCTCTGTCTGAGAGCTCATAATGACAATGAAATTCGTGTCAACGGCAGCTGTAGTGTCCCAATATTTTCAAGGATTAACAGGATGCACCTGGTTTGCCCCATGAACACATCGCCATATGTGGATCCTCAGAAGTCGGGTCACAGTATTTGGGAAGAGTTCTCCATGAGCTTCACCCCAGCTGTCAGAGAGGTGGTGGAATTTGCAAAACGCATCCCAGGATTCAAAGAGCTGTCCCAGCACGACCAGGTCAGCCTGCTGAAGGCCGGCACCTTTGAGGTGCTGGTGGTGCGCTTTACATCCCTGTTCGACGTGAAGGAGCGCACGGTTACATTTCTGAGCGGCAGGAAGTACAGCGTGGAGGCGCTTCGCTCGATGGGCGCTGGAGATCTTCTCAACTCAATGTTTGACTTCACAGAGAAGCTACAAGCGCTGAACCTCAGCGAGGAGGAGATGAGCCTCTTCACGGCTGTAGTGCTGGTGTCTGCAGATCGCTCTGGTCTCGAGAACGTCAACTCGGTTGAGGCCCTTCAGGAAACTCTGATACGAGCTCTGCGCAGCTTGATCACCAAGAACCACCCCAATGAGATCGCCATCTTCACTAAACTGCTCCTTAAACTGCCGGACCTGCGCTCGCTCAACAACATGCACTCTGAGCAGCTCTTGGCCTTCAAGGTCCACCCCTGACCACCCACCAACCCCGTAACTGTGGACCACACCCCCCATCCATCTCCAAAGCCTCCCGTTTAGACCGTGGGGAACTGTTGTTACTCGGtgcccccctttttttttttttttttttttgacacttcTCCCCCTGACTTTCAAAGCATTGCTGGTTAAAAATGGAGGTAGAGGGGGGGCAGATACTTAAGAAGTCATTGTACTGTAAAACGCCTCTGCTCGTGCTAACGCACACGACTCGCTGACACAAACTGGAGGGGTTTCGTTGTAGATGCTTACAAGAGTTTGTATGATTACGCGGTTTGTGTGTGCGCAGAGGCATCTTGAATTGAGTTTTTGGATTTATAAATCTGCCTGTGCAATAAGTGACGCGTTCACTGGTTTTGTGATTTGTTCCTTGTTGGTCTTTTAGTACTTTCAGAGAAGAGGAAGTAAGGTGTTTTGTGGGCCGTATGAATGCTGTGTGTTGCTAAGGGGAGATTATGAAGGGATATtcccacaaacaaacaagaaaataagTGCACAGAGCACGGTTTAGCATCCATTCTAattaaaagagaagaaaaactaagaaaTGTAAGAATGTGGAACAAGCTGCTAATCTGAGCTTTTTTGGCAGAAAGACACAGGAATGTTTAATTGATAGAtctatttttgtagtttttttttggcttctaaCCTGTAATTAAATGCAGAGGAAGCCACTCTTAGGCTGCGTTCCAAAACACGCTAATGCAGCCCGTGGCACGCTGATGTTGTTGTATTCAGCGGACATTGACAAACTGTCTTTTTACTGTCAGTTTTCTCTTCCAGGTCAACTACTGCAATGATGGAGCAACAGCTTGAAGGGAGTCTTGATGAGCAATTTGAAATTAGTTGACTGTTGACACATTTATAGCTCTCTACCTGACTAGTGGTGCATTTGGATTATTAGCACAAACACAGAAAGTCGACTGTTGCCCGCTTGAGTGTTTGTTAACTACGAGATCGAATCAGACCGCAGGCTTGGCCAAGCGTTTGCATTCTAGCATAGGGTATGTTTCTGAGTTTAGATCTGCGTAGTGGTACATCTCTGTATATTTCCTGATTCGTAGGGCTTTTAGTAATGACACAGTTTTTGATGATGCTAAATGACAAAAGAGGAGTAGAACGTAACTCGTTTTATCACTGTAAGACATGTGCACGCTTCTCCTCTGTACAGATGGGACTCAAAGCCATCCTCAGCGATGTCATAATATAGGCCACACCCTAACTGACACCTGACACCTTCACGCATCTGTATGGGTGATCATTTCAGGCTGAATATTTATgacgatttttttttcctcttcaaataattgtaattctgttcattttccttttcaaaatgatggtttttttttgcttttggctAAGTCTGTTCAGTGAAAGTTCTTGTAGAATAATTGTATATCTGTGTGATCAGCTGCAGTAAGCAAATAGTGTGCATACTCGAGCGCCACTGGAccagacaggaagaggaaacGGGAAACGACCCAAAACTCCACCAAGTAACACCGGCAATGCCTCTCATCACCATGCCAGCTCTGGGCATCTGAACTCTTCTCGGGTCGGTTTTGATATCAAAGCTGCGGTCGGTGAATAGTCAAGAAAAGAAGTATCTTTTGTTTGGTGTTGGTGTTTCTCTCTCATTGTTTGGCCTGTGGCTCACTCAGTGTCATTGTTGTGTTGCCATAATCCAGTCTGTCAGTCTTCTTCTGTGAAAGCATTGTATGATAGCTAGatttctatatatctatatataaatatataatataaatacatataaaataagaaaataaacagataaatgctAAACTCA

Function

symbol description
nr1d2b Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation; hormone-mediated signaling pathway; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in nervous system; optic vesicle; and pharyngeal arch. Orthologous to human NR1D2 (nuclear receptor subfamily 1 group D member 2).

NR:

description
nuclear receptor subfamily 1 group D member 2-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217707.1 True 3924 mRNA 0.48 8 1970767 1978340
XM_043217708.1 False 3769 mRNA 0.48 9 1970767 1978338

Neighbor

gene id symbol gene type direction distance location
LOC122324230 rarb,LOC107700643,LOC107719850,LOC107717720,LOC107563215,LOC107565243,LOC107103632 coding downstream 106770 1704996 ~ 1863997 (-)
LOC122323559 LOC107700650,LOC107719859,LOC107563207,LOC107717718,LOC107565241 coding downstream 313743 1645568 ~ 1657024 (-)
LOC122323557 LOC107717726,LOC107700649,LOC107565231,LOC107670692,LOC107563213,LOC107719860 coding downstream 344125 1621101 ~ 1626642 (-)
LOC122323396 NA coding downstream 467034 1502295 ~ 1503733 (-)
dlgap3 dlgap3,LOC107664711,LOC107563279,LOC107698989,LOC107712634,LOC107722119 coding downstream 721944 1116971 ~ 1248823 (-)
rpl15 rpl15 coding upstream 5461 1983801 ~ 1987189 (-)
ube2e1 ube2e1,LOC107655879,LOC107565235,LOC107743927,LOC105903698,LOC107700659 coding upstream 12839 1991179 ~ 2005034 (-)
LOC122324005 NA coding upstream 81774 2060114 ~ 2061725 (-)
cited4a LOC107689549,LOC107556893,LOC107595899,LOC107732920,LOC107675931 coding upstream 275498 2253838 ~ 2258434 (-)
stmn1a LOC103471979,LOC105933928,LOC102781761,LOC107098265,LOC104924882,LOC103142368,LOC100709328 coding upstream 755396 2733736 ~ 2736130 (-)
LOC122324231 NA non-coding downstream 166672 1795736 ~ 1804095 (-)
G129793 NA non-coding downstream 297991 1669624 ~ 1672776 (-)
G129772 LOC107565238,LOC107717719,LOC107563205,LOC107700642 non-coding downstream 355802 1613941 ~ 1614965 (-)
G129770 LOC107700642,LOC107717719,LOC107565238,LOC107563205 non-coding downstream 358528 1608103 ~ 1612239 (-)
G129750 NA non-coding downstream 385348 1584071 ~ 1585419 (-)
LOC122324022 NA non-coding upstream 28234 2006574 ~ 2012208 (-)
G129876 NA non-coding upstream 47897 2026237 ~ 2027202 (-)
G129887 NA non-coding upstream 103894 2082234 ~ 2082742 (-)
G129889 NA non-coding upstream 124363 2102703 ~ 2103104 (-)
LOC122323752 NA non-coding upstream 144346 2122686 ~ 2129112 (-)
G129738 NA other downstream 471361 1498688 ~ 1499406 (-)
pef1 pef1,LOC107664714,LOC107726139,LOC107698987,LOC107712637 other downstream 683561 1281539 ~ 1287206 (-)
smim12 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other downstream 690258 1278912 ~ 1280509 (-)
LOC122323272 NA other downstream 875864 1072151 ~ 1094903 (-)
thsd7aa NA other downstream 918643 1017155 ~ 1052124 (-)
LOC122323398 pkib,LOC107098269 other upstream 761664 2740004 ~ 2751570 (-)
G130000 NA other upstream 847004 2825344 ~ 2832956 (-)
G130041 LOC107687396,LOC107708727,LOC107595896 other upstream 930149 2908489 ~ 2911603 (-)
G130083 LOC103461248,LOC102786159 other upstream 1170814 3149154 ~ 3149789 (-)
LOC122323345 fam46bb,LOC107712594,LOC107700817,LOC107737782,LOC108413340,LOC103370123 other upstream 1335049 3313389 ~ 3323828 (-)

Expression


Co-expression Network