mylipa (mylipa,LOC107754815,LOC107694366,LOC107584315,LOC107731572)


Basic Information

Item Value
gene id mylipa
gene name mylipa,LOC107754815,LOC107694366,LOC107584315,LOC107731572
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6234025 ~ 6252339 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217804.1
CGGTCACAGAGAAGCAGAAGGCTAGAGGAAAGTGAGCGAGGGCTGATGTAGGGTGCTTAGAGAGGACAACAGTGAGAGctgtttgtagtatttttttttgttcaggaAGGGTAGACCAAAGACAAAACACCTCTCCAAAATGCTCTGCCACGTAACTCGACCGGACGCGGTGGTGATGGAGATAGAAGTGGACGCCAAGGCGAACGGAGAGGACTGTCTGAACAAGGTGTGTCGGAAGTTGGGAATTATTGAGGTGGATTACTTTGGGCTGCAGTTTTCTGGCAGTAAGGGAGAAAACCTGTGGCTGAACCTGAGGAACAGAATCTCTCAGCAGATGGACAATCTCACGCCCTGCAGACTACGGCTCAGAGTGAAGTTCTTCGTGGAGCCTCACCTTATTCTGCAGGAGCAGACGAGACACCTGTTTTTTATGCATGTGAAAGAGGATCTGCATCGTGGACATCTGCGGATGTGCTCTGAACAGGCCGAGGAGCTCAGCGCCCTCCTGGCCCAGGCCGAGTTCGGCGACTATAACCAGAACACAGCCAAGTACTGGTACACTGAGCTCTGTTCCACCGAGCCCAACCAGGCCACCATCAACAGTATCATAGCCAAGCACAAGGCTCTGGAGGGTCTGAGCCAGGCGTCAGTGGAGTACCAGGCTCTGCAGCTGGTGTCGTCTCTGGAGCATTATGGGGTGGAGTGGCACTGGGTGCGGGACGCTGAAGGACAGAGGTTGGCTATCGGTGTGGGACCAGACGGTATCGCTATCTGCCGAGAGGACTTCAGCCTGGTTAACAGGATATCTTATCCCATAATACAAATTGCCACGCAATCAGGGAAGAGCGTGTACTTGACTGTCACCAAGGAAACCAGCGACAGTGTGGTCCTGCTGTTCAAGTTAATCAGCAATAGAGCAGCCAGCGGTCTGTATCGGGCCATCACAGAAACACATGCCTTTTACAGGTGCGACACCGTAACGAACGCCGTCATGATGCAATACAGCCGGGATTTCAAGGGTCACCTGGCTTCGCTTTTCCTCAACGAGAACATCAACCTGGGCAAGAAGTACGTCTTCGACATCCGCCGGACCTCCAAGGAGGTGTACGACTACGCCAGGCGGGCGCTGTACAACGCCGGGCTCGTGGACATGATGTCGAGGCCGGGGGAGCGCAGCCCGTCGTCCCGCTCGCCGTCCCGCGAGCAGGAGGGGGCCCTGGACTGCGGGGGCTGCCAGCAGAGCCGGCTGCTCCAGGAGAAGCTGCAGAAGCTGCGGGAGGCGCTGCTGTGCATGCTGTGCTGCGAGGAGGAGATCGACGCCGCGTTCTGCCCCTGCGGTCACATGGTGTGCTGCCAGAGCTGTGCCGAACAGCTGCAGTCATGCCCGGTGTGCCGGTCAGAGGTGGAACACGTCCAGCACGTCTACCTGCCGACCTGCACCAGCCTGCTGAACCTGACGATCGGCGGCGACACCAGCCCCGAACCCATCCACCGAGGCATGGCCCACACCTGCACTACCAACGACTACAGCACCACCGAGAAGATCTACCAAAACTAAGCTCGCCTGCCGCTCTTCCACAGGACTTGAGTTCCGTTTCAGACTCCAAGAGTCTGCTTGGGTTGCTCCTCGTGTGAAAGAAAGGAGCGTCTTTTGATGTTTGTGAATGTTTGTCTCTTAAATTAATTGTATCAGTTGATctgataaatgtatttttttttttgctctacaCTCAACAGCATGCAGAACGTcggtttgttttagtttttttttgcccatAACCTGCACATCTGTATGCCGTGAGGAAACGTTAgctaatttaatttctatttttacgCTTTGTTTTTAATACGCATCgtccacttttttttcttttgcagtggatttgagtttgttttaggttttgtttttgaggttttCATAGTTTCCATGCCAATGAAGAGGTATTAATGGCGGGGGGCACAGACCCTCGCAGCACTTTGAGCGGAGAGGAAGTCGTCAAACTACTGATCCTCCATTCGTATGTAGATTAACCGCCACTCCAAACCCGACCGGCAAACGCTCCTTAGGGCCCGGAGGTTTATGCCTTCGACGCTTTTATTTTCGCGGTCACGGTCGACCGGTGACTTGCTTTGAATTTAAAGGGTACTGAACGATCTCTCGGTGCAATGCTAACCATTTTGAAGAGATTCTGAcctttttatgctttagttttttttttggaagatgtGGGACGTTTTCGGTAGGAAGgctcaaaaaaaaagatctaatcGACACTGTCACTTTACCAAGGAGTTTCTTAAGTGTATTGTTCCTAGGGGTTTGCCTTAATGTAGCAGCAACACGGTGTGTTTGATATGCATTCTTTCTTTGCACAGACTATTATGGAGAGATGAAGAGGACTATTTTCTTTACTGCTGATATCTGATGTGGAACAGTCGCAGCAGGagatattttttcaatttatacaAGTAggatttgtttctgtttgtttgaagCAAAAACTATGCTCTGTAAATATAGAAGTAACTCTCAgtcttttatatttctttgaaCGAGAGGTAttaataaagctgttttttaaacTAA

Function

symbol description
mylipa Predicted to enable ubiquitin-protein transferase activity. Involved in negative regulation of Wnt signaling pathway. Acts upstream of or within gastrulation. Located in cytoplasm. Is expressed in several structures, including axis; midbrain; neural plate; polster; and retina. Orthologous to human MYLIP (myosin regulatory light chain interacting protein).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MYLIP

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0016567 protein ubiquitination biological_process
GO:0007369 gastrulation biological_process
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005515 protein binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K10637 MYLIP, MIR; E3 ubiquitin-protein ligase MYLIP

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217804.1 True 2587 mRNA 0.50 7 6234025 6252339

Neighbor

gene id symbol gene type direction distance location
jarid2b jarid2b,LOC107754814,LOC107694367,LOC107702394,LOC107731546 coding upstream 71482 6061549 ~ 6162543 (+)
LOC122323385 sdhaf3,LOC107702681 coding upstream 351051 5876050 ~ 5882974 (+)
col28a1a col28a1,LOC107754784 coding upstream 494840 5725368 ~ 5739185 (+)
rpa3 rpa3,LOC107754810,LOC107598208,LOC107672835,LOC107731561,LOC107702426,LOC107568286 coding upstream 516344 5716696 ~ 5717681 (+)
LOC122323266 NA coding upstream 619895 5613068 ~ 5614130 (+)
npr1a npr1a,npr1,LOC107694365,LOC107677481,LOC107754786,LOC107731544,LOC108435512 coding downstream 14044 6266383 ~ 6344260 (+)
ints3 ints3,LOC107754816,LOC107584314,LOC107731564,LOC107694364,LOC107677482 coding downstream 94450 6346789 ~ 6361192 (+)
gon4la LOC107754817,LOC107694363,LOC107584344 coding downstream 113179 6365518 ~ 6377599 (+)
LOC122323487 LOC107694355,LOC107754822,LOC107595588,LOC107711322 coding downstream 182893 6435232 ~ 6443128 (+)
nelfe nelfe,LOC107754803,LOC107584366,LOC107694353,LOC107677468,LOC107595590,LOC107711324 coding downstream 221270 6473609 ~ 6477150 (+)
G130944 NA non-coding upstream 5938 6227746 ~ 6228087 (+)
G130940 NA non-coding upstream 64666 6167626 ~ 6169359 (+)
G130893 NA non-coding upstream 280555 5923032 ~ 5953470 (+)
G130899 NA non-coding upstream 299308 5798511 ~ 5934717 (+)
G130891 asns,LOC107754811,LOC107672863,LOC107731557,LOC107702657 non-coding upstream 301183 5930852 ~ 5932842 (+)
LOC122324219 NA non-coding downstream 2667 6255006 ~ 6263954 (+)
G130950 NA non-coding downstream 79326 6331665 ~ 6334244 (+)
G131010 NA non-coding downstream 140577 6392916 ~ 6393957 (+)
G131016 LOC107677454,LOC107595587,LOC107584310,LOC107694359,LOC107754821 non-coding downstream 153046 6405385 ~ 6409741 (+)
G131093 LOC107694325,LOC107711328,LOC107754828,LOC107584304,LOC107677461,LOC107595615 non-coding downstream 386142 6638481 ~ 6639229 (+)
LOC122323983 tac1,LOC107702667,LOC107731560,LOC107754813,LOC107672864 other upstream 311052 5785130 ~ 5922973 (+)
LOC122323254 sdhaf3,LOC107702681 other upstream 481108 5745801 ~ 5752917 (+)
LOC122324139 LOC107598234,LOC107672810 other upstream 648370 5583505 ~ 5585655 (+)
G130640 txnipa,txnip,LOC108410889,LOC107672857,LOC107738596 other upstream 919847 5223700 ~ 5314178 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other downstream 119496 6371835 ~ 6401298 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other downstream 210744 6463083 ~ 6488760 (+)
G131042 gabbr1b,LOC107595614,LOC107677456,LOC107584305 other downstream 267581 6519920 ~ 6526080 (+)
ppp1r11 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other downstream 439635 6691974 ~ 6696204 (+)
G131183 NA other downstream 581530 6833869 ~ 6836858 (+)

Expression


Co-expression Network