matn1 (matn1,LOC107697056,LOC107742840,LOC107696557,LOC107706195,LOC107593568,LOC107591630)


Basic Information

Item Value
gene id matn1
gene name matn1,LOC107697056,LOC107742840,LOC107696557,LOC107706195,LOC107593568,LOC107591630
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 13350200 ~ 13358487 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217834.1
ATCCTTGTAACAACTGCTTCATATAACTGCATAAAATCCAAATACATAAATCTTCAGAGCACGctcaaaatatatgtaaattatttaaaaatatttttttatatatggtTTCATATATTTTAGCTTCCATTTAATTAGGTAAATAgctacatatatttttttaattaattacaaagagctcaagattttgtttttttccaggagACTTGAGCATGCTAGTGTGGTGCAGATggtataagaaaaaaaaaacccactttaaTGTTCTTGTCAAAGTCACTGGCACACTTTACATGGCTTTTTCCGGCAGGTTGTGGATGGATAGAAGCAGCAGAAACAGTATGTGTTCAGAAACCTTAATTGCTGTGTTAtgcaatacataaaacaaacacgcacacctcatttacatacacaaacaGCAGACTACTGGGGAATTATTTTCTAAGTGGTCCTGTGCACTTCCCAAGAagatttaaagggttactcacctctgtgtcattccaaactcatTTGAGAGAAAAAAGCTGATATTTAAGCTGATTTCTTCAATGCTCTGAAAGTGGACGGTAACCACCATTGTCTAACCCAAAATTACTAAACGCATACAAGTCTTTTTTGCAGTTTGTGCAGAGAGTGTCACGTCTTTTGAAATCAAGCATACATAGCTTTTGGTGAGGAACTTGCTTAAGTTTAACATCCTTGCTTAACAGCTGTGGTCactattcattttcattttggacaCTGAAAAAATATCTCATTTCATGCTGCGTAGAAGAATGTCACGCGGGTTTAAAAAGACTTGACGGCGACAGAAAGTAATATTTGGAATCTATTTTGTACTGACAGGTGAAAGTGTGGCCTCCACCTCTAACAGAAATGTCGGTGTGACCAACGTTTATCTCACGCACTACATCTGCCAGTAGGCCTACATCTGCTTGCGTGGATGCTAGACATACTAGACACTGCATGGTGCGTAAAGTagaaaaacacagacgcacacGTACACATAGTCAGAACAGAGCCGTCTGTGTTGGATCAGGAACGGAGGCTTCCCGCATAATTCCTGTGCATAAATtcctgcgtgtgtgtgattaaaTTGAGAGGAAAAGTGCCCAGAAAAGAAAGATTCATCTTAATGTTTATTTGACTTCAACCCCAAGCTAGAGACCCCTCCTAGGGCTCCCAATGAACTCGGTTTCCcttacacaaacatatacacagaTCAAGGTGTGTTTGTCTTTCCTACCCAAACTCTAGGTTTTTCGGAGCAGGTATCCCCCTCCCCCCAAAACAGTCCGTACTCCTCAGGGAGATGGATTTGAGGGCGGCGTCTCGAAAACTTAAGTGTGTAtctgtgaatatgtgtgtgttgataACCTGCACGTTTCTCTGTCTGTGAATCAGTCTGTCTCTGGTTGTCGAGCAGGTCGTTAGGACTCACGCCGCATTACAGTATGACACTGCCGGGGTTTGTGATGCTGCTATGCATCCTGGGAGCTCAAGCCACCGCGGATCTGAGAAATGCTGCTGCTATGGCTGCAGGCTTGTGTAACACCAAGCCCACTGATGTGGTGTTCATCATCGACAGCTCTCGAAGCGTCCGCCCCTCAGAGTTCGAACAGGTCAAGGTCTTCCTGACCAAAGTAATTGACGGTTTGAACGTCGGACCTGACGCCACTCGCGTAGGTGTCGTAAACTACGCCAGCCGAGTGAAGAACGAGGTCTCTCTAAAGTCCCACAAAACCAAAGCAGCGCTGGTCAAGGCTGTGTCCAAGATCGAGCCACTGTCCACCGGCACCATGACCGGGCTCGCCATCCAGTTTGCCATGAACGTGGCCTTCAGTGAAGCCGAGGGAGCGCGCAAATCTCCTGACATCAGCAGGGTGGCTATCATTGTGACCGACGGCAGACCTCAGGACAACATCCGTGACATCGCAGTAAGGGCGCGAGAGGCCGGCATCGAGATATTCGCCATCGGAGTGGGTCGAGTGGACATGACCACGCTCAGACAGATGGCCAGCGAGCCTCTCGAGGATCACGTGGACTACGTGGAGAGCTACAGCCTGATTGAGAAGCTCACCAAGAAGTTCCAGGAGGCCTTCTGTGCGGTTGTGTCGGACCTATGCGCGACAGGCGATCATGACTGTGAGCACATTTGCATCAGCACACCTGGATCTTTCAAGTGTGCCTGCAAAGAGGGATTTACACTCCAGGGCGACGGCCGATCATGCAGCGCTTGCAGTAACGCAGCCACAGATGTGGTCTTCTTGATCGACGGCTCCAAGAGTGTGAGACCAGAGAACTTCGAGCTGGTCAAGAAATGGATCAACCTGATCATCGACAAACTGGACGTGTCAGACACAAACACCCACGTGGGACTGGTGCAATATTCCAGCACAGTCAAGCAGGAGTTCCCTCTGGGACGcttcaacaacaaaaaggcCCTGAAAGAAGCAGTGAAAAGGATGGACTATATGGAGAGGGGAACCATGACTGGCCAGGCCCTCAGTTTCCTGGTGGATAACAGCTTCTCTCCTAGCCAGGGCGCCAGACCCGGAGTGCTAAAGGTCGGTATTGTCTTCACTGATGGCAGGTCCCAAGACTACATCGGAGATGCTGCCAGGAAGGCTAAGGAAAATGGCTTTAAGATGTATGCTGTGGGTGTTGGCAACGCTATTGAGGATGAGCTGAAAGAAATCGCTTCTGAACCTGTTGCTGACCATTACTTCTACACGGCTGACTTCAAAACCATTAACCAAATTGCCAAGAAGCTGCAAATCAATGTTTGTCAAGTGGAAGATCCCTGTGAATGCAATTCTGTTGTCAAGTTCCAGAAAAAAGTGGAGGAGGCACTACAGGCATTAACAAAGAAATTGGAAGCTGTGACGAAAAGGATCACTGCCCTGGAGAACAAGATTGTTTGAGAAGGCACCAACGTCTAATGCTCACACTGCCATTCCTTtcatttcttgtaaaaaaaaacacctcctgtgacctctgacctttatGCTTAAGTTCCTCTCCTCCACTCCAGTTCCTCCTGCTACTCTGCCGTCATCACTATTGTCCACGGGGATGGAGCACTGATTGTGATGATGACCGTGGTTTACCCGACCAAGCTTGCTCTGAATTATGGTCACCATAAAAACCGAAGGTGTCGATTTTCAAACAGCCATCCCCTCTAACAAAACCCTGTGTgcgttgagaaaaaaaatcttcccaTATGGTCTGAGAAGGTCTTCACGTACGACCTGGATAATAAAGTCTTCCCTGTGGGGAGGTGGTGTGTACATTAAATCCAGTAAAGCTTTCATTCTGTCTTTGCTTTTCTTCATTCTACCTTTCTCAAACCAGTTCTCCCAGATTTTGCCccgaaaatattattttatatggaatatatatatataaaatggtaaTTTAATGAGAATTGACTTGAACTAAATGTGTGAATGCTTGATAATTTCCTCAGATAAAACACATGAAGCACACACAAAAGcagacacaacacacacacacacttaactcACAGGTAAATGTTCACTGACTCGGCAAGCGCTAAACATGCCACTTGTGATGATTCAATAAAGTCCcattttgtg

Function

symbol description
matn1 Predicted to enable calcium ion binding activity. Predicted to be an extracellular matrix structural constituent. Acts upstream of or within cartilage development. Predicted to be active in collagen-containing extracellular matrix. Is expressed in several structures, including cartilage element; head; integument; notochord; and pectoral fin. Orthologous to human MATN1 (matrilin 1).

NR:

description
PREDICTED: cartilage matrix protein isoform X1

GO: NA

KEGG:

id description
K19467 MATN; matrilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217834.1 True 3596 mRNA 0.45 8 13350200 13358487

Neighbor

gene id symbol gene type direction distance location
LOC122323745 LOC107742873,LOC107706196,LOC107591673,LOC107593593,LOC107696571,LOC107697046 coding upstream 152 13345591 ~ 13350048 (+)
LOC122323742 LOC107706194,LOC107593565,LOC107696547,LOC107591672,LOC107742864,LOC107697044 coding upstream 4754 13339064 ~ 13345446 (+)
pum1 LOC107706192,LOC107593563,LOC107591628,LOC107742842,LOC107696544,LOC107697057 coding upstream 42772 13291297 ~ 13307428 (+)
LOC122324249 NA coding upstream 45056 13305006 ~ 13305144 (+)
nkain1 nkain1,LOC107593567,LOC107670117,LOC107591671,LOC107696573 coding upstream 60466 13284661 ~ 13289734 (+)
sesn2 sesn2,LOC107697045,LOC107593595,LOC107706154,LOC107696562,LOC107578469 coding downstream 1153 13359640 ~ 13364878 (+)
yrk yrk,fgr,LOC107706197,LOC107593569,LOC107697055,LOC106515751,LOC107696553,LOC107742837,LOC107591631 coding downstream 7465 13365952 ~ 13382526 (+)
ahdc1 ahdc1,LOC107706199,LOC107593570,LOC107697054,LOC107742836,LOC107591632,LOC107696580 coding downstream 25859 13384346 ~ 13405202 (+)
LOC122324138 mettl24,LOC107706133,LOC107593580 coding downstream 48445 13406932 ~ 13411220 (+)
wasf2 wasf2,LOC107593571,LOC107706200,LOC107697052,LOC107696558,LOC107742835,LOC107591634 coding downstream 53102 13411589 ~ 13417958 (+)
G132549 NA non-coding upstream 223583 13125877 ~ 13126617 (+)
G132547 LOC107591615,LOC107696587,LOC107731336,LOC107696584,LOC107552275 non-coding upstream 226234 13118716 ~ 13123966 (+)
G132541 psmb4,LOC107593590,LOC107669568,LOC107706179 non-coding upstream 247275 13101949 ~ 13102925 (+)
G132498 LOC107593576,LOC107731729,LOC107706171,LOC107696598 non-coding upstream 484605 12786644 ~ 12865595 (+)
G132755 klhl43,LOC107706211,LOC107589442,LOC107742826,LOC107696549,LOC107591641 non-coding downstream 153121 13511608 ~ 13512971 (+)
G132754 klhl43,LOC107589442,LOC107706211,LOC107742826,LOC107591641,LOC107696549,LOC108426671 non-coding downstream 154535 13513022 ~ 13513896 (+)
G132773 NA non-coding downstream 196524 13555011 ~ 13556679 (+)
G132774 NA non-coding downstream 202680 13561167 ~ 13561445 (+)
G132884 NA non-coding downstream 488295 13846782 ~ 13848115 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other upstream 13451 13309427 ~ 13336749 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other upstream 324174 13021417 ~ 13026026 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other upstream 925122 12423290 ~ 12425078 (+)
LOC122323774 NA other upstream 1237303 12111279 ~ 12112897 (+)
LOC122323782 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other upstream 1826319 11522229 ~ 11523881 (+)
G133066 ext1c,LOC107654729,LOC107706241,LOC107592050,LOC107754264,LOC107592945,LOC107688378 other downstream 1429057 14787544 ~ 15212430 (+)
LOC122323257 tpmt,tpmt.1,LOC107591974,LOC107688424 other downstream 1476114 14834601 ~ 14837969 (+)
LOC122323518 LOC107654743,LOC107688368,LOC107602377,LOC108413484,LOC107706254,LOC107710329 other downstream 1719967 15078454 ~ 15192566 (+)
LOC122323314 LOC107602378,LOC107591987,LOC107706255,LOC107710332,LOC107688367,LOC107654747 other downstream 1950240 15308727 ~ 15313877 (+)
anxa14 LOC107706258,LOC107654687,LOC107710308,LOC107592054,LOC107688418 other downstream 1997121 15355608 ~ 15361845 (+)

Expression


Co-expression Network