LOC122323745 (LOC107742873,LOC107706196,LOC107591673,LOC107593593,LOC107696571,LOC107697046)


Basic Information

Item Value
gene id LOC122323745
gene name LOC107742873,LOC107706196,LOC107591673,LOC107593593,LOC107696571,LOC107697046
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 13345591 ~ 13350048 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217836.1
GGTTCTCAGAAAGTATACAGGAAGCCGTGACCGCCGCACAGGAACTTACATGTGCATATGTGTTAGTGACAGGGTGGATATGTGACAGTTTCTAAGTGTTTCAGCTTGTTTGTATCATTGTGAAAGAGACGAAGAGAAAGATGTCTGGAACACGCACCCTCTGCTGCCATGTCACCACTGCGACCATCTCATTTGCTGTCTTATATCTGACTGGTAACGTGCTGAAACTGGTGGGCATCATTCTAATGGTTTCACTGGATAAAGAGGCATTTTCTGCCCTCTATCATGAATCAAAGGCTACCAAAGGTCAGCGTGTCTttgACATCAGCACTGATATTCTGATGCTGGTTCTGATGTCCATCTCTGCTGTGCTGGTCCTTTTCTCTAAACGCAAGGGACCGATGTTTGTGCTGCCTTTTGTGCTGATGATGTTTGTGGAGCTGAGTCTGAGTTTTCTGTCCCTGTTTGCTGGAGCCTTGGGTCTGCCGGGGACCCACAACTACAGAGACATGCTGCAAGCTGTAAAAAGTCAGAAGAAAGTCGACAGGTTGAATGAAGAGGAAATCGGCCAGTTTACCATGTGGTACTCGGTTCTCTTTATGCTGGAAATACTGCTGAAGGTGTACGTCCTTCATGTGTCAATGAAGTGTTTCTATGCCCTGAAAGCAGAAAGGATGGCTGTCGTCAATGTTAATACTGGAAAAACTGTTGCAGTGAAGCTGCCATCTTATGATGAGGCTCTCAAGATGAAACCTAAAGACACTCCCCCTTCCTATCATGAGGTTTAAACTGAATGTGTGCGTCAGGCATGGttttatgcaaaatgcaaaaacccCTTTTGGGTGTAAACTGCAAACTTTTAGCTCAAATATGCACACGTATACTAACAGCATGCAGCACAAACAGGCTATGCTTACATctattacaaaataaaggtacaaaatttC
>XM_043217837.1
GGTTCTCAGAAAGTATACAGGAAGCCGTGACCGCCGCACAGGAACTTACATGTGCATATGTGTTAGTGACAGGGTGGATATGTGACAGTTTCTAAGTGTTTCAGCTTGTTTGTATCATTGTGAAAGAGACGAAGAGAAAGATGTCTGGAACACGCACCCTCTGCTGCCATGTCACCACTGCGACCATCTCATTTGCTGTCTTATATCTGACTGGTAACGTGCTGAAACTGGTGGGCATCATTCTAATGGTTTCACTGGATAAAGAGGCATTTTCTGCCCTCTATCATGAATCAAAGGCTACCAAAGttgACATCAGCACTGATATTCTGATGCTGGTTCTGATGTCCATCTCTGCTGTGCTGGTCCTTTTCTCTAAACGCAAGGGACCGATGTTTGTGCTGCCTTTTGTGCTGATGATGTTTGTGGAGCTGAGTCTGAGTTTTCTGTCCCTGTTTGCTGGAGCCTTGGGTCTGCCGGGGACCCACAACTACAGAGACATGCTGCAAGCTGTAAAAAGTCAGAAGAAAGTCGACAGGTTGAATGAAGAGGAAATCGGCCAGTTTACCATGTGGTACTCGGTTCTCTTTATGCTGGAAATACTGCTGAAGGTGTACGTCCTTCATGTGTCAATGAAGTGTTTCTATGCCCTGAAAGCAGAAAGGATGGCTGTCGTCAATGTTAATACTGGAAAAACTGTTGCAGTGAAGCTGCCATCTTATGATGAGGCTCTCAAGATGAAACCTAAAGACACTCCCCCTTCCTATCATGAGGTTTAAACTGAATGTGTGCGTCAGGCATGGttttatgcaaaatgcaaaaacccCTTTTGGGTGTAAACTGCAAACTTTTAGCTCAAATATGCACACGTATACTAACAGCATGCAGCACAAACAGGCTATGCTTACATctattacaaaataaaggtacaaaatttC

Function

NR:

description
PREDICTED: lysosomal-associated transmembrane protein 4B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217836.1 True 947 mRNA 0.44 7 13345591 13350048
XM_043217837.1 False 935 mRNA 0.44 7 13345591 13350048

Neighbor

gene id symbol gene type direction distance location
LOC122323742 LOC107706194,LOC107593565,LOC107696547,LOC107591672,LOC107742864,LOC107697044 coding upstream 145 13339064 ~ 13345446 (+)
pum1 LOC107706192,LOC107593563,LOC107591628,LOC107742842,LOC107696544,LOC107697057 coding upstream 38163 13291297 ~ 13307428 (+)
LOC122324249 NA coding upstream 40447 13305006 ~ 13305144 (+)
nkain1 nkain1,LOC107593567,LOC107670117,LOC107591671,LOC107696573 coding upstream 55857 13284661 ~ 13289734 (+)
snrnp40 snrnp40,LOC107593559,LOC107591625,LOC107696518 coding upstream 61859 13279531 ~ 13283732 (+)
matn1 matn1,LOC107697056,LOC107742840,LOC107696557,LOC107706195,LOC107593568,LOC107591630 coding downstream 152 13350200 ~ 13358487 (+)
sesn2 sesn2,LOC107697045,LOC107593595,LOC107706154,LOC107696562,LOC107578469 coding downstream 9592 13359640 ~ 13364878 (+)
yrk yrk,fgr,LOC107706197,LOC107593569,LOC107697055,LOC106515751,LOC107696553,LOC107742837,LOC107591631 coding downstream 15904 13365952 ~ 13382526 (+)
ahdc1 ahdc1,LOC107706199,LOC107593570,LOC107697054,LOC107742836,LOC107591632,LOC107696580 coding downstream 34298 13384346 ~ 13405202 (+)
LOC122324138 mettl24,LOC107706133,LOC107593580 coding downstream 56884 13406932 ~ 13411220 (+)
G132549 NA non-coding upstream 218974 13125877 ~ 13126617 (+)
G132547 LOC107591615,LOC107696587,LOC107731336,LOC107696584,LOC107552275 non-coding upstream 221625 13118716 ~ 13123966 (+)
G132541 psmb4,LOC107593590,LOC107669568,LOC107706179 non-coding upstream 242666 13101949 ~ 13102925 (+)
G132498 LOC107593576,LOC107731729,LOC107706171,LOC107696598 non-coding upstream 479996 12786644 ~ 12865595 (+)
G132755 klhl43,LOC107706211,LOC107589442,LOC107742826,LOC107696549,LOC107591641 non-coding downstream 161560 13511608 ~ 13512971 (+)
G132754 klhl43,LOC107589442,LOC107706211,LOC107742826,LOC107591641,LOC107696549,LOC108426671 non-coding downstream 162974 13513022 ~ 13513896 (+)
G132773 NA non-coding downstream 204963 13555011 ~ 13556679 (+)
G132774 NA non-coding downstream 211119 13561167 ~ 13561445 (+)
G132884 NA non-coding downstream 496734 13846782 ~ 13848115 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other upstream 8842 13309427 ~ 13336749 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other upstream 319565 13021417 ~ 13026026 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other upstream 920513 12423290 ~ 12425078 (+)
LOC122323774 NA other upstream 1232694 12111279 ~ 12112897 (+)
LOC122323782 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other upstream 1821710 11522229 ~ 11523881 (+)
G133066 ext1c,LOC107654729,LOC107706241,LOC107592050,LOC107754264,LOC107592945,LOC107688378 other downstream 1437496 14787544 ~ 15212430 (+)
LOC122323257 tpmt,tpmt.1,LOC107591974,LOC107688424 other downstream 1484553 14834601 ~ 14837969 (+)
LOC122323518 LOC107654743,LOC107688368,LOC107602377,LOC108413484,LOC107706254,LOC107710329 other downstream 1728406 15078454 ~ 15192566 (+)
LOC122323314 LOC107602378,LOC107591987,LOC107706255,LOC107710332,LOC107688367,LOC107654747 other downstream 1958679 15308727 ~ 15313877 (+)
anxa14 LOC107706258,LOC107654687,LOC107710308,LOC107592054,LOC107688418 other downstream 2005560 15355608 ~ 15361845 (+)

Expression


Co-expression Network