XLOC_000676 (slc44a1a)


Basic Information

Item Value
gene id XLOC_000676
gene name slc44a1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 52632856 ~ 52652163 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001145
AATGAATCTCTTCAAGGCTCTATGCGCAAATGTTTTCGCGgcattttaaagaattaaatacCCATAACACCAAGTTCATGTTTATTCGACATCCCGTGTGGTTGAATGTGATTCAGCCacaatgattaattatttaaaatgtgcaaatCGCCAAATAAATTCGCATGTTTGTCTTTTCCGATCTCAGCTTTAGTTCACAGAAATAGAAATAGCACTCCTGGGTTTGTCATTCAAAGTGAATCATATTAACTGAATCACTTCAAATGAATCGCATTCCAAAGAGCCGAATATGTTTCGCGAATCAAACCTGACCAATTCAATGACATTACTAGTATATGCCACGCGTGTGCGGTGTGCCTGATCTTAAATTAATCTCTCATCAGGTATGAACAATCTGACTTCTTCAACTCTTGACAATGTATGTTACTCTGGGGGGTGACATATTTGCAGACATTTCGATGGTCTCCGGTGTGACAGAGGAAAAGGAGGAGCAGAAACGCGCTGCTCCGCCTTCACATTATCGCGGAGTTCTCAAAGGAGAATTACAGCACCTCAGATCCTGAAAAACACATCCTCATTATCCATTTAGAGACATTAGCGGCTTCAGTCTGATTTATATTCCCGCGCGGCTGCTGAAGAGGACGTGTGTTTGTTTACGACgccatttttaaagtatttatttaccgCGGTGCAACTTTTACACTCATTCCTCCGAAACAGCAGCAGGACAACTGGCGACTCCctaattttgtagttttttttagatgtgtTTGTGATTCTCATCAGCTCAGGAATTATGGGATGCTGCGGCAGCACACAGAAGGAACGCGACTGGAAGCCTTTAGAGCAGAGAAGGTGCACAGATATACCATGGCTGCTGCTCTTCATCCTCTTCAATATCGGCATGCTCTGCATCTGTGGTTTCGCTATCGCGACAGGAGCTGCTACCAGACTCGTATCAGGGTACGACAGCTACGGCAACACCTGCGGTCAGAAAAATGCCCAAATCCCAGGCATCGAACACAGCGGACTGGACCACAGCAACAGAAAGTATGTGTTTTTCCTGGACCCCTGCAAAATTGACATTGCTAAGAGAAAGATTAAATCTGTGGCTTTATGTGTGTCGAAGTGTCCAAAGGTTCAGCTGGACACGTATGAGGACCTCACCAAGTTCGCCACAGTTAACGGATCTGCTTTATGCACCTATGATGTACAGCCGGAGGCTTATTCGTCTAATCCTAATAAAGATGTGAAATGTCCAAAACTTCCTGTTTTTCCGAGTGCGTCTCTGCCGGTGTTTCACCGCTGTATGCCGGTCGACATCTCGTGTTTTGCTACCTTTGCGAAGGCCTTCATCACGTTCGTCAGTGATAACAGTGTGCTCCATCGGGTCATTGCTGGAGTCATGATGGCTAAAGAGATCATCATGGGCCTCTGTCTGCTCGCCCTtgTTCTGTCCCTGATCCTGATGGTGGTGATCCGCTATATATCTGTGCTTCTGGTCTGGATTCTCACAGCAGTGGTGGTGATTGGCTCAGTGGGTGGTTGCGGGATCCTCTGGTGGCTGTATGTGGATCAGGGGAAAGCTCTGAACGCCACAATGCCGGCTCATGATCTGGAGATTGCCCATGACAATCAGCAGGCCCTGCTCATCTACGCCATAGGAGCCACCATCTTTACTGTCCTTTTGCTGCTGCTGATGTTCTTCATGAGGAAGCGTGTGGCTCTCACCATCGCTCTATTCCATGTAGCTGGTAAAGTGTTCACTCATCTGCCTCTGCTGGCGCTGCAGCCCTTCTGGACCTTCCTCACACTCATGCTCTTCTGGGTCTACTGGATCTCTGTGCTGCTCTGCCTCGGCACCGCAGGCAGTCCAGTGAAGAATAATCGGACTGGTCTGGTGGAGTTTAAGATGGACGGTCCGCTGCAGTATATGGTCTGGTATCACGCCGTCGGCCTCATCTGGGTCAGCGAGTTCATCCTGGCCTGTCAGCAGATGACCATCGCTGGAGCTGTGGTCACTTACTACTTCACAAGAGATAAGTCTCAGCTGCCCTTCACACCCATCGTGTCGTCAGTGCTGCGTCTGATGCGCTTTCACCTGGGCACCGTGGCTAAAGGAGCCTTCATCATCACTCTGGTGGAGATCCCTCGCCTCATCCTCACTTACATCCACAGCCAGCTCAAAGGAAAGGAGAACGCGTGTGCTCGCTGCATGCTGAAGGCCTGTATCTGCTGTCTGTGGTGTCTGGAAAAGTGCCTGTCCTACCTGAACATGAATGCTTATACAGCCACGGCCATTAACAGCACTAATTTCTGCACGTCTGCTCGAGATGCTCTCTTCATCCTGGCAGAAAACGCTCTCCGTGTGGCCGCCATCAACAGTGTCGGAGACTTTGTGCTGTTTTTGGGAAagATTTTGATCGTGTCGTGTACGGCGTTTGCGGGCGTCCTCTCTCTGAACTACCAGCGTGAATACAGCGTCTGGGTGCTGCCGCTCATCATCGTGTGTGTGTTCGCCTTCCTGGTGGCTCATTGTTTCCTCTCCGTCTTCGAGATCGTGGTGGACGTCCTGTTCCTCTGCTTCGCCATCGACACCAAGCAGAACGACGGCAGTCCAGGCCGCGAATATTACATGGACAAGAGCCTCATGGAGTTTGTAGAAAACTCCAGGAAAGCTACAGAGAAGTACAGCAAAGCAGAAGGAGACAGTCGGGAGATGAAATCTATGACTGGAGGAACACTGGCCTGA
>TCONS_00001146
TTCACATTATCGCGGAGTTCTCAAAGGAGAATTACAGCACCTCAGATCCTGAAAAACACATCCTCATTATCCATTTAGAGACATTAGCGGCTTCAGTCTGATTTATATTCCCGCGCGGCTGCTGAAGAGGACGTGTGTTTGTTTACGACgccatttttaaagtatttatttaccgCGGTGCAACTTTTACACTCATTCCTCCGAAACAGCAGCAGGACAACTGGCGACTCCctaattttgtagttttttttagatgtgtTTGTGATTCTCATCAGCTCAGGAATTATGGGATGCTGCGGCAGCACACAGAAGGAACGCGACTGGAAGCCTTTAGAGCAGAGAAGGTGCACAGATATACCATGGCTGCTGCTCTTCATCCTCTTCAATATCGGCATGCTCTGCATCTGTGGTTTCGCTATCGCGACAGGAGCTGCTACCAGACTCGTATCAGGGTACGACAGCTACGGCAACACCTGCGGTCAGAAAAATGCCCAAATCCCAGGCATCGAACACAGCGGACTGGACCACAGCAACAGAAAGTATGTGTTTTTCCTGGACCCCTGCAAAATTGACATTGCTAAGAGAAAGATTAAATCTGTGGCTTTATGTGTGTCGAAGTGTCCAAAGGTTCAGCTGGACACGTATGAGGACCTCACCAAGTTCGCCACAGTTAACGGATCTGCTTTATGCACCTATGATGTACAGCCGGAGGCTTATTCGTCTAATCCTAATAAAGATGTGAAATGTCCAAAACTTCCTGTTTTTCCGAGTGCGTCTCTGCCGGTGTTTCACCGCTGTATGCCGGTCGACATCTCGTGTTTTGCTACCTTTGCGAAGGCCTTCATCACGTTCGTCAGTGATAACAGTGTGCTCCATCGGGTCATTGCTGGAGTCATGATGGCTAAAGAGATCATCATGGGCCTCTGTCTGCTCGCCCTtgTTCTGTCCCTGATCCTGATGGTGGTGATCCGCTATATATCTGTGCTTCTGGTCTGGATTCTCACAGCAGTGGTGGTGATTGGCTCAGTGGGTGGTTGCGGGATCCTCTGGTGGCTGTATGTGGATCAGGGGAAAGCTCTGAACGCCACAATGCCGGCTCATGATCTGGAGATTGCCCATGACAATCAGCAGGCCCTGCTCATCTACGCCATAGGAGCCACCATCTTTACTGTCCTTTTGCTGCTGCTGATGTTCTTCATGAGGAAGCGTGTGGCTCTCACCATCGCTCTATTCCATGTAGCTGGTAAAGTGTTCACTCATCTGCCTCTGCTGGCGCTGCAGCCCTTCTGGACCTTCCTCACACTCATGCTCTTCTGGGTCTACTGGATCTCTGTGCTGCTCTGCCTCGGCACCGCAGGCAGTCCAGTGAAGAATAATCGGACTGGTCTGGTGGAGTTTAAGATGGACGGTCCGCTGCAGTATATGGTCTGGTATCACGCCGTCGGCCTCATCTGGGTCAGCGAGTTCATCCTGGCCTGTCAGCAGATGACCATCGCTGGAGCTGTGGTCACTTACTACTTCACAAGAGATAAGTCTCAGCTGCCCTTCACACCCATCGTGTCGTCAGTGCTGCGTCTGATGCGCTTTCACCTGGGCACCGTGGCTAAAGGAGCCTTCATCATCACTCTGGTGGAGATCCCTCGCCTCATCCTCACTTACATCCACAGCCAGCTCAAAGGAAAGGAGAACGCGTGTGCTCGCTGCATGCTGAAGGCCTGTATCTGCTGTCTGTGGTGTCTGGAAAAGTGCCTGTCCTACCTGAACATGAATGCTTATACAGCCACGGCCATTAACAGCACTAATTTCTGCACGTCTGCTCGAGATGCTCTCTTCATCCTGGCAGAAAACGCTCTCCGTGTGGCCGCCATCAACAGTGTCGGAGACTTTGTGCTGTTTTTGGGAAagATTTTGATCGTGTCGTGTACGGCGTTTGCGGGCGTCCTCTCTCTGAACTACCAGCGTGAATACAGCGTCTGGGTGCTGCCGCTCATCATCGTGTGTGTGTTCGCCTTCCTGGTGGCTCATTGTTTCCTCTCCGTCTTCGAGATCGTGGTGGACGTCCTGTTCCTCTGCTTCGCCATCGACACCAAGCAGAACGACGGCAGTCCAGGCCGCGAATATTACATGGACAAGAGCCTCATGGAGTTTGTAGAAAACTCCAGGAAAGCTACAGAGAAGTACAGCAAAGCAGAAGGAGACAGTCGGGAGATGAAATCTATG

Function

symbol description
slc44a1a Predicted to enable transmembrane transporter activity. Acts upstream of or within sensory perception of sound. Predicted to be integral component of membrane. Predicted to be active in membrane. Human ortholog(s) of this gene implicated in high grade glioma. Orthologous to several human genes including SLC44A1 (solute carrier family 44 member 1).

GO:

id name namespace
GO:0007605 sensory perception of sound biological_process
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-204 Predicted to enable transmembrane transporter activity. Acts upstream of or within sensory perception of sound. Predicted to be integral component of membrane. Predicted to be active in membrane. Human ortholog(s) of this gene implicated in high grade glioma. Orthologous to several human genes including SLC44A1 (solute carrier family 44 member 1).

Ensembl:

ensembl_id ENSDARG00000015946

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001145 False 2752 mRNA 0.49 16 52632856 52652163
TCONS_00001146 True 2220 mRNA 0.51 15 52633367 52651686
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Neighbor

gene id symbol gene type direction distance location
XLOC_000675 abca1a coding upstream 4449 52560549 ~ 52628407 (+)
XLOC_000674 tacr3l coding upstream 94339 52518176 ~ 52538517 (+)
XLOC_000673 BX323839.1 coding upstream 122100 52495043 ~ 52510756 (+)
XLOC_000672 cldnd1b coding upstream 145861 52481332 ~ 52486995 (+)
XLOC_000671 glb1 coding upstream 154110 52462068 ~ 52478746 (+)
XLOC_000677 osbp coding downstream 10040 52662203 ~ 52699063 (+)
XLOC_000678 CABZ01021532.1 coding downstream 83321 52735484 ~ 52736125 (+)
XLOC_000679 wu:fc75a09 coding downstream 101922 52754085 ~ 52763447 (+)
XLOC_000680 smarca5 coding downstream 140276 52792439 ~ 52820954 (+)
XLOC_000681 NA coding downstream 155469 52807632 ~ 52807843 (+)
XLOC_000667 NA non-coding upstream 264658 52363402 ~ 52368198 (+)
XLOC_000668 NA non-coding upstream 265279 52365030 ~ 52367577 (+)
XLOC_000666 LO017718.1 non-coding upstream 269749 52353162 ~ 52363107 (+)
XLOC_000665 NA non-coding upstream 285957 52345955 ~ 52346899 (+)
XLOC_000684 NA non-coding downstream 614237 53266400 ~ 53278288 (+)
XLOC_000686 NA non-coding downstream 667996 53320159 ~ 53320674 (+)
XLOC_000687 NA non-coding downstream 668768 53320931 ~ 53321338 (+)
XLOC_000689 AL935166.1 non-coding downstream 712347 53364510 ~ 53368034 (+)

Expression

Expression of XLOC_000676(slc44a1a) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Expression of XLOC_000676(slc44a1a) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network