Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000001_06303405_06305351 |
| gene name | TNNC2 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 6303405 ~ 6305351 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| tnnc2 | Predicted to enable actin filament binding activity; calcium ion binding activity; and calcium-dependent protein binding activity. Acts upstream of or within response to activity. Predicted to be part of troponin complex. Is expressed in fast muscle cell; head muscle; heart tube; skeletal muscle; and skeletal muscle cell. Orthologous to human TNNC2 (troponin C2, fast skeletal type). |
| id | name | namespace |
|---|---|---|
| GO:0006937 | regulation of muscle contraction | biological_process |
| id | description |
|---|---|
| K12042 | TNNC2; troponin C, skeletal muscle |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000001_06303405_06305351.mRNA | True | 673 | mRNA | 0.50 | 5 | 6303405 | 6305351 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_06297032_06300530 | TNNC2, TNNC2.L | coding | upstream | 2745 | 6297032 ~ 6300660 (+) |
| CI01000001_06121398_06124748 | TNNC1.L, TNNC1B, TNNC1, TNNC1A | coding | upstream | 178453 | 6121398 ~ 6124952 (+) |
| CI01000001_06040916_06041645 | NA | coding | upstream | 260795 | 6040916 ~ 6042610 (+) |
| CI01000001_05960289_05963221 | NA | coding | upstream | 340062 | 5958349 ~ 5963343 (+) |
| CI01000001_05942155_05943721 | NA | coding | upstream | 359386 | 5942155 ~ 5944019 (+) |
| CI01000001_06309664_06321614 | SLC35C2 | coding | downstream | 4010 | 6309361 ~ 6322088 (+) |
| CI01000001_06325915_06358454 | SLC35C2, COL20A1 | coding | downstream | 19723 | 6325074 ~ 6358674 (+) |
| CI01000001_06363645_06370085 | ADNP | coding | downstream | 58294 | 6363645 ~ 6370101 (+) |
| CI01000001_06420606_06430104 | CAMKVL | coding | downstream | 115255 | 6420606 ~ 6430133 (+) |
| CI01000001_06442969_06455699 | UBA1 | coding | downstream | 137618 | 6442969 ~ 6455859 (+) |
| G16212 | NA | non-coding | upstream | 20853 | 6282339 ~ 6282552 (+) |
| G16193 | NA | non-coding | upstream | 76260 | 6226859 ~ 6227145 (+) |
| G16189 | NA | non-coding | upstream | 94625 | 6208552 ~ 6208780 (+) |
| G16188 | NA | non-coding | upstream | 95051 | 6207632 ~ 6208354 (+) |
| G16172 | NA | non-coding | upstream | 126273 | 6176623 ~ 6177132 (+) |
| G16247 | NA | non-coding | downstream | 127733 | 6433084 ~ 6433328 (+) |
| G16257 | NA | non-coding | downstream | 209770 | 6515121 ~ 6515398 (+) |
| G16284 | NA | non-coding | downstream | 366831 | 6672182 ~ 6673511 (+) |
| CI01000001_06718133_06747744 | KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 | non-coding | downstream | 418458 | 6717159 ~ 6747744 (+) |
| G16317 | NA | non-coding | downstream | 494817 | 6800168 ~ 6800381 (+) |
| G15995 | NA | other | upstream | 588454 | 5711885 ~ 5714951 (+) |
| CI01000001_05279884_05287123 | NA | other | upstream | 1013449 | 5279837 ~ 5287698 (+) |
| G15794 | NA | other | upstream | 1238701 | 5061218 ~ 5064704 (+) |
| CI01000001_03618075_03620436 | NA | other | upstream | 2681954 | 3618075 ~ 3621451 (+) |
| CI01000001_01668334_01670035 | CAMK2N1B | other | upstream | 4632401 | 1667762 ~ 1671167 (+) |
| CI01000001_07531945_07539781 | NA | other | downstream | 1227221 | 7531541 ~ 7540586 (+) |
| G17234 | NA | other | downstream | 1726773 | 8032124 ~ 8032483 (+) |
| G17353 | NA | other | downstream | 2910671 | 9216022 ~ 9228859 (+) |
| G17354 | NA | other | downstream | 2929112 | 9234463 ~ 9240677 (+) |
| CI01000001_09435836_09436037 | NA | other | downstream | 3112977 | 9435836 ~ 9436373 (+) |
