LOC122323754 (zmym4,LOC107669919,LOC107566774,LOC107655758,LOC107706586)


Basic Information

Item Value
gene id LOC122323754
gene name zmym4,LOC107669919,LOC107566774,LOC107655758,LOC107706586
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12145753 ~ 12163878 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217852.1
CCCATAATGCATTGCAGCACGCCGACGGGGAAGAGCTTTCGCGGGAGTGCGAGGCAACCCGTCCAGCTAGTTAGGTCTGTTTCAGCAACTTTTGCGGTATTTCGATGTTTTATTGCAGAAGTAATCAATCGTGCATCTCGAAGGGGTTGTTTGTCGACCGCGTTTCGAGAGGGACTGTTGAAAGAACACGCCAGCCTTGTTGAGGAGAGCAGTCTGGCCCCACACAGTCTACAGAGACAGTTTCACCGCTGGGCTCTACGTCTGTCGCAGGTGTCCCTATGTCTAGTGACGATTCAACTGAACAACTTCCAGGAGATGCAGCTGGTTCAGAAGTGAAACCAGATGCAGTGGAGTCATGTCTGCTGGATGCCACCGATGCTGGTGAAAATGAACCGAGCCTTCAAAACAGCTTTACGGAAAGCCAACAGACGAAACAGGGGGTAGAGAAGTTTCCAAAGGAGATGGAGGAAGATCCAGATGTGAGACAACAGCCGGATATGGACCAAGAAAACGGACCAGAAAAGAGCAGCGTAACTGGCCAGAGCGAAGAAGAAAACTCAAAGCAGAAGAACGCTGGAGAGGCAGAGAAGAATGAAGTGAGGAACATCGCAGTAGATGCGGCGCAGTGTTCAGAAGAGCTTGTGATCGCTAAAGTAGAAGACTTCACTAATGAAATGGCAATAGATGTGGACTCAGCTCAGGATCTTGATGGGAAGATGGAGGTAGATGGATCAGATGATGCAGgaAAATCTTTGCCCAAAccaataaaaagagagaaagcggAACCGTCTGCTGTGCAAACACGGTCGATGTTAAAAACTGAGATGAGAACTCAAGCGGCCCAGCTCTCTGATGCCCTACCAGTGAAGGTGAAGGATGAGCCGATGGATGAGGAATATGAGAAAGCGTCTGTGTCGCTGCGCCCAGAGAGAAACATCAAAGATGAGCCTGACACAGCTGAGTTCAACCAGACATCTGATTCGATCAAGATCAGTGCAGTTTTCTCTGTGGGAGGAAATGCCACATCCATTGTTCCAGAAGCTGCTCCTTCAAAGGTGGCACCGGTCCCTACACTATCCCTTCGTTCTCTGGCCCCCGCCAATCCAATTGGTGTGGTCTGCACAGGGTGTAACAAAGTCCTCTTAAAGGGACAGACGGCCTTCCAGCGCAAAGGCTGTCCTAAACTCTACTGCTCACCTCAGTGTCTCTGTAGCACCTCTAATGTGGTGGTCAAGTTACCTCAGAAGAAACAGTGTCACCACTGCCAAAAGGACATTGTTGACCTGAAGGATGTGATCAATGCCCCAGTGGACTTGTCAGGGACACTGAAGGAGTTCTGCAGTCAAAAATGCCTCAGTGCTTTAAGCTTCAAATGCACTGTGTGTCATAAGACGGGAACGACTTACACTCACGAAGTGAACTCATTGGGCTCCATCCAAAAGCTGTGCAGCAACAGCTGCTTCAACCAGTTCCGCTCCTCTAATAAGCTGAACATGAACAGCTGTGTGAACTGTCGGGGACATTGCTATGGCACAGACAGTCAGTGTCCGTCTCTGCAGATAGAGGGCCATGTTATGAAGTTCTGCAAACAAAACTGCCTCGTGGCCTTCAAAAAGAAAAGTTTGAAACCTGTCGCCTGCAAAATTTGTAATACCATGCGCCCAGTTGCAGAAATGGTGGACAGTTCAAGCACAAGTGGTGTCAAGGAACTTTTCTGTTCAGCATCCTGTGTCACAGCGAATAAAGTTCAGACTGTCAGTTCTTCAGGTGCTCCAGTGGAATGCAACAGCTGCAAGCTTAAACTAGCACCTCAGTACCATCTAGCCATGTCTGACGGAACCATCCAAAACTTCTGCTCCTTTTCATGTGTAGTATCATATCAGgAGTCCTTCAGTAAGATAAAACCTTTTGTGCCAATAAATGCTGTAACCTCTACAAGTAACAACACACCTACCCCAAAACATGCTGCCCCCAAACCTGTGCCCTCAGAGTCCAGCTCGTCAGCGAAGAACAGTACTTCAAGTGGTCCAACACAGACGGTCACCAAGATCCCGTGCTCTCAGTGTCTGAACTCGTTCTTCCACAGACCAGAGCTGCTGGAGTTCAAGAGGAAAATGTACGCTTTCTGTGATAATAGTTGTGTTGAGGAGTTCAAACAAATCAACAATGTGATGGCTCGCTGTGAATACTGTAAGATTGATAAGGTTGTCAAGGAGGTCAAAAGGATAAACAAGATTGACCGCAGTTTCTGCAGTGAGGGATGCAAGTTACTGTATAAACATGACCTGGTGAAGCGCTGGGGGAAGAAACACTGTCGcaactgtttttactgtagcgGGTCCTCTCAGGCCCTAGTGACTGAAGTTATTGATAGCATAGAGCAGGAGTTCTGTGGGAACATATGCTTATCACAACACACCTTACTGATGCGCAAGGAAATAAAGTGCTCCATGTGCAGGCAGGCCAAGAAGATGACGGAGACTGTGAAATGGCTCGGTGAGATCAAGCATTTCTGCAGCTTGCAATGCTTGATGTTTTTTTGCAGTCTGCAGGGAACCACTGGGGCTGTCAGATCTGCAAACAAGACTTTTTCCACACAAGGGACAAGCCCATCATTGTCTCCAAGCCCTCAAAGTACAGTTAATCACACACCACTGGTAACCAAAGAGGCCACACCGGTCATTGCCAGTGTTATATCACTCTCCAGTGCGTCCAATGGACAGCCAGGTGTTCTGGGGAACAGCGTCCTGCAAGCCTCAGCTGCTACAGCAAAAAGTTCAGGAAatGCGGCCAGCACGCAGACAGACGGTGCGAAGGTTTCTGCGCCACCACCTCGAATCCTGAAGAACAAAGCCTTGCTGTGTAAACCATTAAGTCAAAACAAAGGCACATCTTGCAAACCTAATGTCTGTGACATGAACACACAAACAGATGGACCTTCCATGATGGTTCTGCCTGTGCCGGTGCCAATCTATGTTCCGGTTCCCATGAATCTCTACACCCAATACACTCCGAAGTCTGTGGGCCTTCCACTTCCGGTTCCGGTGCCCTTGTTTTTCCCCACCACTCTGGACAGTGCCGAGCGCATTGTGAAGACCATTCAGGAAATCAAAGAGAAGATCCCTGATGACCCGCTGGAGGCCGACCTCATCATGATGGCAGAGATGGTGGCTGAGGATGCTGAGAAGGAGAAAAGCATCATTGTTACTGATCAGACCAGTAATATAATGGACGATCTTGATCTGGAAGCCTTATCCAGCAATCTGAGTTGGGAGGAGGACTCTGTGTCTTCAGCGCAGACGTGGGATCAAACCCCTGAGCCTGAGAGGCCTCCTCCATCTAGATCTGCCACACTGACCCCCGTCTCCACCGCCGCAGAGGAACCACAGATGGACTTGGAGGCCGATTTCCCGATCGAAAGCATTGAACTTTTCAGAGCGCCAACTCAAACGGACACAACAGATTCTGGCAAACGGAAATCTCGCAAGAGAAAACATGACGGCTTCCCTCAGAAGAAAAGGGGCCGAAAGAGTGCAGCTGTTGTTCCAGTCAAATCCGCACCAGACCTTTCTAACCTCGCAAAACTGCAACACGAGTACGCTGTGAATGCTTGGAAGGAATGGGTACGCTGGAGGAACGGCCAACCCAACATGGAGACTCCCAAATTTGGCTCACGCAGTATGACACTAAAGGAGGATTTGTTAAAATGCTGCACTGCTGAAATAAGCTACGGCCTCTGCAAGTTCATTTCTGAGGTTCGTCGACCCAACGGAGAGAAATACAGCCCTGACAGCATCTTCTATCTCTGTTTGGGAATCCAGAAGTACCTGTTTGAGAACAGTCGGTTGGAGAACATCTTTGCAGACGTCTTCTACACCAAATTCTGCCATGAACTGACCAGCATACTCAGACAGTGGAAACCAACTATTTTGCCCAGTGGTTACGTTCACTCTCGTGTAGAGGAGGAGTATCTGTGGGACTGTAAGCAGCTGGGGGCGTTTTCACCCGGCGTGCTGCTCAACACACTGATATACTTCTTCACTAAGTACTTCAGCTACAAGACGGCGGAGCAGCACCGCCGCCTCTCTTTTGGCCACATTGTACGCTGCTCCCGGAGCAAGGGCAACACAAAAGTGGCCTGTTTGCGTTTCTATCCCCCGAAAGAGGACACAAGCACAGctgGCGTCCCTGCAAAGAAAAggaaggaagaggaggatgaaaaTGACACTGTATATGAGATAAAAGAGAATGCAGACAATCCTCTTCGCTGCCCTGTCAGGCTGTATGAGTTCTATCTCTCAAAATGCTCACCCAGCGTGAGGCAACGCACAACCGACTTTTACCTGAGCCCCGAGCGCTCCTGCGTACCCAACAGTCCCATGTGGTTCTCCACCACCTCCTTGAGTGATGAAGTTCTGGACAGCATGCTCACACGTATCCTTACTGTCAGAGAGCTGCACctggagagagaaaaatcacCCAACGACACGGATTCAGACAGTGACTCGGACTTCAGGCCCTGACTTTGAGATGCGACTCACGTCATAAGCTCAAACCAAATTTGCAAAGTGAAGAAGGTATCTCAAGTTTGTCCTATAGATGGTTCTCTGAGTATTGTTACCAAGCTGACAAAATCTGGATGCCATTAAATGGGCCTTTAGGATACTGATAGAGATTCCAGTGGATGGAAAGTGTTTTGTCATTGTATTTTCCATGTTTAATTGGATAGTAGTTATGAGGCTgtacagtgtgtttgtgtatgaaaAACTATATTTGACAAAAGCAGCTTAcgtaagaaaaagaaaacattcaaaaggtGCATACGGTTGTATGGATTTCATTTACAGGACAAAGCTGATTTTATGTAATGCCACGTTACACACAAGTAGTATTTGATGGGGTTTCTGCCCATTCTTTGTATCATATTGAAACACTAAAGACATTGAAAGCATCCTTTTACAACAGGCATTAAAAACAATGGCTGGTGTATCTAGCCCTAAAATTAATACTGAGgtcttttggcttttttttttttttttttttttttctttttccaaccTAAACACTGCAGGATTTCATAATTCTTGTATGGacaaggctgcatttctttGGATAAAAAGGACAATGAAACTGTCTGTGAGTCTTTTTTCCAACATACTGCTCATATACtgtcatatattaaaaattgctaTCAAATGAA

Function

symbol description
zmym4 Predicted to enable DNA binding activity. Involved in cytoskeleton organization and regulation of cell morphogenesis.

NR:

description
PREDICTED: zinc finger MYM-type protein 4-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24675 ZMYM2_3_4; zinc finger MYM-type protein 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217852.1 True 5200 mRNA 0.47 27 12145753 12163878

Neighbor

gene id symbol gene type direction distance location
sfpq LOC107722137,LOC107669930,LOC107566770,LOC107706594,LOC107558579,LOC107655760 coding upstream 5969 12121395 ~ 12139784 (+)
LOC122323779 NA coding upstream 25859 12118492 ~ 12119894 (+)
LOC122323874 NA coding upstream 27171 12116530 ~ 12118582 (+)
LOC122323873 NA coding upstream 34926 12109556 ~ 12110827 (+)
LOC122323773 NA coding upstream 46855 12097091 ~ 12098898 (+)
LOC122323753 LOC107566772,LOC107722138,LOC107655757,LOC107706592 coding downstream 1207 12165085 ~ 12184252 (+)
rbm48 LOC107670247,LOC107722129,LOC107566766,LOC107548761 coding downstream 22763 12186641 ~ 12190024 (+)
cdk6 cdk6,LOC107567973,LOC107722162,LOC107667775,LOC107558583 coding downstream 53087 12216965 ~ 12245745 (+)
fam133b fam133b,LOC107567972,LOC107669879,LOC107722159,LOC107712925 coding downstream 86092 12249970 ~ 12253702 (+)
hepacam2 LOC107669863,LOC107722158,LOC107667766,LOC107558577,LOC107712921 coding downstream 89968 12253846 ~ 12263779 (+)
G132305 NA non-coding upstream 30399 12114759 ~ 12115354 (+)
LOC122323790 NA non-coding upstream 32008 12112991 ~ 12113745 (+)
LOC122323789 NA non-coding upstream 39083 12105788 ~ 12106670 (+)
LOC122323793 NA non-coding upstream 41940 12103312 ~ 12103813 (+)
LOC122323788 NA non-coding upstream 52523 12091760 ~ 12093230 (+)
G132311 NA non-coding downstream 26860 12190738 ~ 12192364 (+)
G132301 NA non-coding downstream 33799 12197677 ~ 12199695 (+)
G132318 NA non-coding downstream 83666 12247544 ~ 12247745 (+)
G132317 NA non-coding downstream 84893 12248771 ~ 12249423 (+)
G132376 NA non-coding downstream 214395 12378273 ~ 12397361 (+)
LOC122323774 NA other upstream 32856 12111279 ~ 12112897 (+)
LOC122323782 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other upstream 621872 11522229 ~ 11523881 (+)
zgc:91910 zn706,LOC107556412,LOC107574718,LOC107710523,LOC107670289,LOC104962755,LOC108425704 other upstream 1727657 10415640 ~ 10418096 (+)
triqk triqk,LOC107724370,LOC107710222,LOC107702072 other upstream 2392197 9734220 ~ 9753556 (+)
G131801 trib1,LOC107724318,LOC107565192,LOC107702074,LOC107710180,LOC107556392,LOC107653840 other upstream 2506792 9636973 ~ 9638961 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other downstream 259412 12423290 ~ 12425078 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other downstream 857539 13021417 ~ 13026026 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other downstream 1145549 13309427 ~ 13336749 (+)
G133066 ext1c,LOC107654729,LOC107706241,LOC107592050,LOC107754264,LOC107592945,LOC107688378 other downstream 2623666 14787544 ~ 15212430 (+)
LOC122323257 tpmt,tpmt.1,LOC107591974,LOC107688424 other downstream 2670723 14834601 ~ 14837969 (+)

Expression


Co-expression Network