LOC122323759 (LOC107660582,LOC107714390,LOC107657518,LOC107584150)


Basic Information

Item Value
gene id LOC122323759
gene name LOC107660582,LOC107714390,LOC107657518,LOC107584150
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 11764874 ~ 11772074 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217856.1
ttaatttctttctcCTTGTCTTTAAAGGGTGCCAAAGGTTCATCTGGTGCCGCTGGCCTTCCTGGAGAGGGTGGACTTGCTGGTCTTCCAGGACCAATGGGACCTGTTGGACCTCCAGGACCCCCTGGTCCTCCTGGCCCAAGCTATCATGTTGGTTTTGATGATATGGAGGGCTCTGGCGTTCACTTCAGTTCAGTCCCTGGAGTAAGAGGACCGATAGGAATCCAGGGACCTCCTGGTGCCCCAGGACCACAAGGTAAACCTGGCTTACAAGGATTTCCTGGTGAGAAAGGCAGTGAGGGAGCTCAGGGAAAAGATGGCCAGCCTGGTTTGGACGGCTTCCCTGGACCACAGGGACCAAGGGGCGACAAGGGAGACCGAGGTGATAGGGGTGAACCTGGTCGAGATGGAAGTGGACTCCCAGGTCCACCCGGCCCCCCCGGACAACCTGGACAAATTATTTATCGTTATTCTGAAAATtatgatGAAACTGGAAGACCAGGTCCTCAGgGAGGGGGTGGTCTTCCTGGTCAAGCAGGCTTTCCAGGCCCAGTGGGACCAAAGGGTGACAGAGGAGAACCTGGCTCACCAGGCTATGGCATTAAGGGTGAGAAAGGAGAACCCGGAGTAATTCTTGGACCTGATGGAAACCCACTCTTCCTTGGTGGACTGACAGGCcaaaaggGTGAGAGAGGGCTTGCTGGACCAGTCGGACCTTctGGTCCAGCTGGACCTTCTGGTTTGAAAGGTGAATTTGGAATGCCAGGCAGACCCGGCCGTCCAGGTGTGAACGGATACAAAGGAGAGAAGGGAGAACCAGGGTCAGGCTCTGAATATGGCTACCAAGGTCCTCCTGGTCCCCCAGGACCCCCTGGTCCCCCTGGACCTGCTGTGCCCTTGGACAGATTTGGTagATATGAAGATTATTCGAGGCACTATCCAGcTACGAAAGGAGAGAAAGGAGACCAGGGAGCTCCTGGTGTTCCAGGTTTTTCCTCTAACTTTGATATATACGCCCTAAAGAATGAGATGAAGGGGGAGCGTGGTGAGTCTGGTGTTAAAGGAGAGAAAGGAGAGCCAGGAGGTGGATTTTATGACCCTCGTTTTGGAGCTGTACAAGGACCACCAGGAAACCCTGGACCTACCGGACCTAAAGGAGATTCAATCAGAGGTCCCCCTGGACCGCAGGGCCCACCAGGACAACCTGGAGTTGGTTATGATGGTCGTCCAGGAAACCCAGGACCTCCTGGACCGCCTGGTCCTCCAGGGTCACCGTCATTGCCAGGAGCCTATAGACCACcACTCAGTATTCCCGGACCTCCAGGTCCCCCCGGCCCACCAGGAATTCCTGGCACTGGATCTGGGGTGACTTTCTTGAGGTCTTATGATATAATGATAGCCACAGCACGCAGTCAGAATGAAGGTGCTTTGATTTACATTTTGGACAGAAATGACCTCTACCTCAAAGTTCGGAATGGAGTCAGACAAGTGATGCTTGGAGATTATAAACCCTTATATGGAGAGCTGGACAATGAAGTGGCAGCGGTCCAGCCGCCCCCTGTTGTTCACTATTCCCAAGACCACACAGCTAACAATGGAGCAGAGCAGATTTCTCCACCGCTGCCGCCGATCGAATTTCCAAGGAGGGAGCCAGAGAACAGAAACCCCAGTCCACCTGACTCCCGTTACCCTGACCCACGATACCCACCCTATACTGATAACAGGTACACTGATCCTGTACAACCACACAGATACCCCGTACAACCAGAGAGGAACCCCATCACTCCAGCCCGCCGTCCCAGCCCCCCTGTCGGTCAACCAGAAGGCCACGTCCACACTTCTGGACCAGGGCTACATCTTATTGCCCTGAATTCTCCACAAGTGGGCAACATGAGAGGCATTCGTGGGGCAGACTTCCTGTGCTTCCAGCAGGCTCGGGCTGTGGGCCTGAAGGGAACGTTCAGGGCCTTCCTGTCATCCAAACTTCAGGATCTCTACAGTATAGTTCGCAAATCTGACAGAGAGACATTACCAATTGTTAACCTCAAGGATCAAGTCCTTTTCAGAAGCTGGGAGTCTCTCTTCAGTGACTCAGAGAGCAGGATGAAGGACAGTGCTCCTATCTACTCGTTTGATGGCAGAGATGTCCTGCGGGACAGTGCCTGGCCAGAGAAGATGATCTGGCATGGGTCCAATGGCAGGGGTCACAGACAGACGGATAACTACTGTGAGACGTGGAGGGCCGGAGACCGTGCGGTGACGGGCTTGGCCTCGTCTCTGCAGGCTGGCCAACTCCTCCAGCAGACTTCCAGCAGCTGCTCCAGTTCCTACATCGTGCTGTGCATCGAGAACAGCTACATGACACAATCCAAGAAATAAAGCCGTCCTAAAGAGCCTTTGAACACTCGACACAACTGTTTATACAGGCCCAGTTTCACTCCAGTAGATGCCTGTACCTAacgaa

Function

NR:

description
PREDICTED: collagen alpha-1(XVIII) chain-like isoform X2

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005581 collagen trimer cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06823 COL18A; collagen type XVIII alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217856.1 True 2464 mRNA 0.54 26 11764874 11772074

Neighbor

gene id symbol gene type direction distance location
LOC122323870 ctnnal1,LOC107670281,LOC107724361,LOC107653856,LOC107710384 coding upstream 181937 11535963 ~ 11582937 (+)
LOC122323767 pef1,LOC107664714,LOC107726139,LOC107712637,LOC107698987 coding upstream 243638 11515528 ~ 11521236 (+)
LOC122323771 NA coding upstream 250983 11511343 ~ 11513891 (+)
LOC122323768 LOC107726138,LOC107664713,LOC107563276,LOC107555946,LOC107698981 coding upstream 254352 11507272 ~ 11510522 (+)
LOC122323863 NA coding upstream 643873 11119263 ~ 11121001 (+)
LOC122323766 NA coding downstream 296258 12068332 ~ 12070856 (+)
LOC122323780 NA coding downstream 304507 12076581 ~ 12077830 (+)
LOC122323872 NA coding downstream 309174 12081248 ~ 12084831 (+)
LOC122323773 NA coding downstream 325017 12097091 ~ 12098898 (+)
LOC122323873 NA coding downstream 337482 12109556 ~ 12110827 (+)
G132269 NA non-coding upstream 55002 11708970 ~ 11709872 (+)
G132267 fam206a,LOC107556369,LOC107670282,LOC107710376,LOC107556344 non-coding upstream 56411 11707521 ~ 11708463 (+)
G132266 NA non-coding upstream 57625 11707012 ~ 11707249 (+)
G132227 NA non-coding upstream 369925 11394557 ~ 11394949 (+)
LOC122323901 NA non-coding upstream 685936 11076694 ~ 11078938 (+)
G132291 NA non-coding downstream 60099 11832173 ~ 11832908 (+)
G132298 NA non-coding downstream 287963 12060037 ~ 12060379 (+)
LOC122323795 NA non-coding downstream 305764 12077838 ~ 12078252 (+)
LOC122323792 NA non-coding downstream 312946 12085020 ~ 12085953 (+)
LOC122323796 NA non-coding downstream 318011 12090085 ~ 12090548 (+)
LOC122323782 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other upstream 240993 11522229 ~ 11523881 (+)
zgc:91910 zn706,LOC107556412,LOC107574718,LOC107710523,LOC107670289,LOC104962755,LOC108425704 other upstream 1346778 10415640 ~ 10418096 (+)
triqk triqk,LOC107724370,LOC107710222,LOC107702072 other upstream 2011318 9734220 ~ 9753556 (+)
G131801 trib1,LOC107724318,LOC107565192,LOC107702074,LOC107710180,LOC107556392,LOC107653840 other upstream 2125913 9636973 ~ 9638961 (+)
si:ch211-215i13.3 LOC107579802,LOC107724304,LOC107702091 other upstream 2226372 9536318 ~ 9538502 (+)
LOC122323774 NA other downstream 339205 12111279 ~ 12112897 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other downstream 651216 12423290 ~ 12425078 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other downstream 1249343 13021417 ~ 13026026 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other downstream 1537353 13309427 ~ 13336749 (+)
G133066 ext1c,LOC107654729,LOC107706241,LOC107592050,LOC107754264,LOC107592945,LOC107688378 other downstream 3015470 14787544 ~ 15212430 (+)

Expression


Co-expression Network