rbm48 (LOC107670247,LOC107722129,LOC107566766,LOC107548761)


Basic Information

Item Value
gene id rbm48
gene name LOC107670247,LOC107722129,LOC107566766,LOC107548761
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12186641 ~ 12190024 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217866.1
TACCTTGGTCGCTGACTTCACCACACACAAAAATGGACAGCTCGGTCTCAAATCCTGCTGTGTGGGACACACAAAAAGTGTATAAACACCACGAGCAAAAAAATGTTGCTCAAACACGCCCAAAATACAGAGAGGGAAGGCGCCCCAAAGCGGTTAAgGTGTACACCATCAACTTGGAGTCTCGGTTCCTGTTAGTTCAGGGAGTGCCAGCTATCGGACTGATGGCAGAGCTGGTGCAGCTCTTTGCTCTCTACGGAGTGATCGAGGAGTACAGGGCTCTTGATGAATACCCAGCAGAGCAGTTCACTGAAGTCTACTTAATTCAGTTCCAGAAACTGACGAGTGCAAGGGTAGCTAAACGACACACTGATGAAAAGAGCTTCTTCGGGGGCCAGCTGCACGTCTGCTACGCTCCCGAGTATGAAACCGTGGAAGACACGAGACAAAAGTTACAGGACAGGAGAAGATATGTTAACAGAGCCAGCCATCATACAGttttttcagtaaaacaaCAAGATCTGCGGCCAGAACAAAGCACAGAGTCATCAAGCACAGACACTCAAACAGCTGCGGCACCGGAGATCCAGAAAGGCTCTGAAAAGCCCAGAATGGACAGGGTGAGGTCTGACAGCATCGGCTTTCCTGTGCCGCCGTTGCCACCAGTGGAGGATGTTTCTTACAGACTTTGTGGTTTCGCACAGTCGACCGCTGATGCAACATTACCCACAGAGGATAAGATGGGCTCTCTACACGACGCTATTCCTCCTGTCACAGAAACGTCTGCGCAACGTGCACCTTCCGCCTCtcataaaaaagagagagatctgAGGGAGAGGCAGAAGAACCCCTCGCCGTCTGTTAGATTTATGCCGAGGACTacacatttagaaaatagaaaaagaaaattggAGGGACACGCATTGGTTTTGAATGAAGCAGCTGAAACTGAGGCTCTGATCGGTCCTAAATTACCAGAGCTGCCCAAAGTAGACATGGAGGatcattcattaaatgtaaCCGCCAGTTTGATCCGTCAAACAATGAGCAAGGTTGCATCCGTCCCAGAGGTCAAGCCTGTACAAGTGAAGACCCCTACAGCGAAGCCACGCAGGAGAATTTAATAAGACGACCACGGTCTCGCACCGAGcaacattttacacatttatttcagtttcagccACAAATACTGTTTCAAAAAATGAAGCGGTTCTTTTTAATGTCCGTGTGGTTCCTGAAAGGCGTATTGCTCGAAGGCCAGTACGCTCTGCCAAACGAATAAAAGCAGCGTTTAAGAGCCTGCCCCTTtagaataacaataaatgttacatGCACAAATAGTGATCTGATCTATACCTTTGTGTCTGGGAGGCAGTTGCCGAAGGCTTCCAGTAAAAGGTTTTCATCTTTGACCGTCTTCTCAAAATCTGAATAAGAAACTTTCCCATCGTGGtcataatcctgaaaaaagtgaTGGATTGTATTTTACACCGAACACTGGTAAAATATTACACGTAAGCTTCATGACAGAAGGTAGTACCATTTTTTTCAAGGCGATCTCCACAATGTCCTTAATTCCTTCGTCGGGATCATCTTCGGTGGGTTGCCTGACGAGGCTGTCTTTGAGCATTTGTAGCATCTCCTCCCGTGAGATGTATCCGTCCCCATGCAGGTTGTAGACGTCGAAACAGACTAATACAAATCATTACGTCCACAACATTTCGCCATCGGCATTTTAAAGCGAGAAATAAAGAccttacatttaattttctcgTCCAGGGTGCCTCGCAGAAACACGGACAGGCCTTCCACCCACTCTTTGGCACTTATGTAGGTGTCATTGTCTTTGTCAAACGCACGAAATactgttaaagtaaaaaaaataataataata

Function

NR:

description
RNA-binding protein 48

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K24824 RBM48; RNA-binding protein 48

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217866.1 True 1891 mRNA 0.46 5 12186641 12190024

Neighbor

gene id symbol gene type direction distance location
LOC122323753 LOC107566772,LOC107722138,LOC107655757,LOC107706592 coding upstream 2389 12165085 ~ 12184252 (+)
LOC122323754 zmym4,LOC107669919,LOC107566774,LOC107655758,LOC107706586 coding upstream 22763 12145753 ~ 12163878 (+)
sfpq LOC107722137,LOC107669930,LOC107566770,LOC107706594,LOC107558579,LOC107655760 coding upstream 46857 12121395 ~ 12139784 (+)
LOC122323779 NA coding upstream 66747 12118492 ~ 12119894 (+)
LOC122323874 NA coding upstream 68059 12116530 ~ 12118582 (+)
cdk6 cdk6,LOC107567973,LOC107722162,LOC107667775,LOC107558583 coding downstream 26941 12216965 ~ 12245745 (+)
fam133b fam133b,LOC107567972,LOC107669879,LOC107722159,LOC107712925 coding downstream 59946 12249970 ~ 12253702 (+)
hepacam2 LOC107669863,LOC107722158,LOC107667766,LOC107558577,LOC107712921 coding downstream 63822 12253846 ~ 12263779 (+)
vps50 si:ch211-287b5.1,LOC107669849,LOC107722151,LOC107712924,LOC107667773 coding downstream 74929 12264953 ~ 12367049 (+)
zgc:85777 zgc:85777,LOC107669823,LOC107593525,LOC107731711,LOC107722154,LOC107667771,LOC107558587,LOC108257226 coding downstream 235576 12425600 ~ 12436108 (+)
G132305 NA non-coding upstream 71287 12114759 ~ 12115354 (+)
LOC122323790 NA non-coding upstream 72896 12112991 ~ 12113745 (+)
LOC122323789 NA non-coding upstream 79971 12105788 ~ 12106670 (+)
LOC122323793 NA non-coding upstream 82828 12103312 ~ 12103813 (+)
LOC122323788 NA non-coding upstream 93411 12091760 ~ 12093230 (+)
G132311 NA non-coding downstream 714 12190738 ~ 12192364 (+)
G132301 NA non-coding downstream 7653 12197677 ~ 12199695 (+)
G132318 NA non-coding downstream 57520 12247544 ~ 12247745 (+)
G132317 NA non-coding downstream 58747 12248771 ~ 12249423 (+)
G132376 NA non-coding downstream 188249 12378273 ~ 12397361 (+)
LOC122323774 NA other upstream 73744 12111279 ~ 12112897 (+)
LOC122323782 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other upstream 662760 11522229 ~ 11523881 (+)
zgc:91910 zn706,LOC107556412,LOC107574718,LOC107710523,LOC107670289,LOC104962755,LOC108425704 other upstream 1768545 10415640 ~ 10418096 (+)
triqk triqk,LOC107724370,LOC107710222,LOC107702072 other upstream 2433085 9734220 ~ 9753556 (+)
G131801 trib1,LOC107724318,LOC107565192,LOC107702074,LOC107710180,LOC107556392,LOC107653840 other upstream 2547680 9636973 ~ 9638961 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other downstream 233266 12423290 ~ 12425078 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other downstream 831393 13021417 ~ 13026026 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other downstream 1119403 13309427 ~ 13336749 (+)
G133066 ext1c,LOC107654729,LOC107706241,LOC107592050,LOC107754264,LOC107592945,LOC107688378 other downstream 2597520 14787544 ~ 15212430 (+)
LOC122323257 tpmt,tpmt.1,LOC107591974,LOC107688424 other downstream 2644577 14834601 ~ 14837969 (+)

Expression


Co-expression Network