LOC122323767 (pef1,LOC107664714,LOC107726139,LOC107712637,LOC107698987)


Basic Information

Item Value
gene id LOC122323767
gene name pef1,LOC107664714,LOC107726139,LOC107712637,LOC107698987
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 11515528 ~ 11521236 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217870.1
AACGTGAAAACGCACCAATCAGCTTCAGGGGGCGggtcttaataaaaacaacagaatcgCTCCATTTGCCGAAGATTCTCCGCGGAATGAGTTATCAATACGGACAGGGTTATCCGGGACCGGGCGCTCCCCGACACCACCCGCCTCCAGGGGCACCGTATGGAGGTGGTCCCGCTGTTGGACAGTATGGTTCACCTTATGGTGGTGCCCCTCCAGGTCAACAGTATGGTGGAGGGGCTCCATACGGGTCTTATGGTCAGCCTGGTCCAAGAGGACCGTACGGTGGGGGCCAAGCTCCAGGTGGTCCTTACGGAGGCTATGGACAACCTCAGGGAGGACCGTATAGTCAGCAGGCACCTGCAGGTAACATTCCACCCGGTGTGAACCCCGAGGCCTACCAGTGGTTTTCATCTGTGGATACAGATCGTAGTGGCTACATTAATGCAAAAGAACTGAAGCAAGCACTCATGAACTCCAACAACTCCTTATTCAATGACGAAACCTGCATGATGATGCTCAaTATGTTTGACAAAACCAAAACGGGACGTGTAGATGTATTTGGTTTCTCTGCGCTGTGGATGTTTCTGCAGCAGTGGAGGGCGGTATTCCAACAGTTCGACCGTGACCGATCCGGATCTATTAACAGCAATGAGATGCACCAGGCATTATCTCAGATGGGCTACAATCTGAGTCCTCAGTTCATTCAGGAGCTGGTGAACCGTTACTCAACCGCTCGTGGTGTGAACGGGGTTCTCCAGCTGGATCGCTTCATTCAGGTGTGCACGCAGCTTCAAAGCATGACCCAAGCATTTCGCGAGAAAGACACCGCCATGACCGGCAACGTGAGGATGAATTACGAAGACTTCCTTTCTGGTGCCATCAGCAGACTCATGTGAAGGACTGCATCAGGAATCCAGAAGATGATCTGAGTCTGGATGTACAGCATGACAGTGCCTTTCATTGCAGCTTACCCTGATTTGACCATTTATCTGAAAACTATGCTTATCAAGCATCGCCAGTTAGCCAATTAAAGCACTCGCCGCAAAAGA

Function

symbol description
pef1 Predicted to enable ubiquitin ligase-substrate adaptor activity. Predicted to be involved in COPII vesicle coating; mesenchymal cell differentiation; and positive regulation of protein monoubiquitination. Predicted to be located in cytoplasmic vesicle; endoplasmic reticulum; and membrane. Predicted to be part of COPII vesicle coat and Cul3-RING ubiquitin ligase complex. Orthologous to human PEF1 (penta-EF-hand domain containing 1).

NR:

description
PREDICTED: peflin-like

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23905 PEF1; peflin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217870.1 True 1049 mRNA 0.51 5 11515528 11521236

Neighbor

gene id symbol gene type direction distance location
LOC122323771 NA coding upstream 1637 11511343 ~ 11513891 (+)
LOC122323768 LOC107726138,LOC107664713,LOC107563276,LOC107555946,LOC107698981 coding upstream 5006 11507272 ~ 11510522 (+)
LOC122323863 NA coding upstream 394527 11119263 ~ 11121001 (+)
angpt2b angpt2b,LOC107663733,LOC107724362,LOC107564496,LOC107698979,LOC107710743,LOC107565051 coding upstream 731370 10763151 ~ 10784158 (+)
wdyhv1 wdyhv1,LOC107653860 coding upstream 1101766 10412271 ~ 10413762 (+)
LOC122323870 ctnnal1,LOC107670281,LOC107724361,LOC107653856,LOC107710384 coding downstream 14727 11535963 ~ 11582937 (+)
LOC122323759 LOC107660582,LOC107714390,LOC107657518,LOC107584150 coding downstream 243638 11764874 ~ 11772074 (+)
LOC122323766 NA coding downstream 547096 12068332 ~ 12070856 (+)
LOC122323780 NA coding downstream 555345 12076581 ~ 12077830 (+)
LOC122323872 NA coding downstream 560012 12081248 ~ 12084831 (+)
G132227 NA non-coding upstream 120579 11394557 ~ 11394949 (+)
LOC122323901 NA non-coding upstream 436590 11076694 ~ 11078938 (+)
G132180 NA non-coding upstream 634953 10875871 ~ 10880575 (+)
G132081 NA non-coding upstream 817692 10632648 ~ 10697836 (+)
G132266 NA non-coding downstream 185776 11707012 ~ 11707249 (+)
G132267 fam206a,LOC107556369,LOC107670282,LOC107710376,LOC107556344 non-coding downstream 186285 11707521 ~ 11708463 (+)
G132269 NA non-coding downstream 187734 11708970 ~ 11709872 (+)
G132291 NA non-coding downstream 310937 11832173 ~ 11832908 (+)
G132298 NA non-coding downstream 538801 12060037 ~ 12060379 (+)
zgc:91910 zn706,LOC107556412,LOC107574718,LOC107710523,LOC107670289,LOC104962755,LOC108425704 other upstream 1097432 10415640 ~ 10418096 (+)
triqk triqk,LOC107724370,LOC107710222,LOC107702072 other upstream 1761972 9734220 ~ 9753556 (+)
G131801 trib1,LOC107724318,LOC107565192,LOC107702074,LOC107710180,LOC107556392,LOC107653840 other upstream 1876567 9636973 ~ 9638961 (+)
si:ch211-215i13.3 LOC107579802,LOC107724304,LOC107702091 other upstream 1977026 9536318 ~ 9538502 (+)
LOC122323856 LOC107745707,LOC107709282,LOC107691523 other upstream 2349434 9160370 ~ 9166094 (+)
LOC122323782 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other downstream 993 11522229 ~ 11523881 (+)
LOC122323774 NA other downstream 590043 12111279 ~ 12112897 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other downstream 902054 12423290 ~ 12425078 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other downstream 1500181 13021417 ~ 13026026 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other downstream 1788191 13309427 ~ 13336749 (+)

Expression


Co-expression Network