efcab1 (efcab1)


Basic Information

Item Value
gene id efcab1
gene name efcab1
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12189282 ~ 12190901 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217875.1
CATAccaatctgcaaaaaaaaaaggtatcgCTGAACAAATCTGAATGTGATTCAAAAGATTCGAGTCACTGGGAAGAATCAAAACCCAGGCACAGCAACGAGCACTGTAGCCTAGATACTGAGGAAGACAGCTGCCCCACTAAGTCCCACAATAACCAGATACGGTTTAAAATGCTGttagtataaaataaaacgtttactgaaaaaataaaatgaacgaCTCGGGTTCTCTTTCGGACGCCACACAATGCTCCGCCTCCGTGACGCGTTTCTATAGCAACATTTAACGAAAGGCTCGCgcgagtgaaaaaaaaaacatgcagaaaatGTCGGCGATGAACagaaaactaattcaaaacCTCGCCGAAACATTATGCAAGCAAGTCAAACACTTTAATAAAGCGGAGACGGAGTGTCTGATAAGGCTGTTCAACGGTCTGCTGGGAGAGCAGGCAGAGAGAAGAGCGCCTCACGGACTGGACCGGGTCAGGTTTAGAAATATACTGCACAACACGTTCGGCATGACCGACGATATGATGATGGACAGCGtATTTCGTGCGTTTGACAAAGACAATGACACCTACATAAGTGCCAAAGAGTGGGTGGAAGGCCTGTCCGTGTTTCTGCGAGGCACCCTGGAcgagaaaattaaatTCTGTTTCGACGTCTACAACCTGCATGGGGACGGATACATCTCACGGGAGGAGATGCTACAAATGCTCAAAGACAGCCTCGTCAGGCAACCCACCGAAGATGATCCCGACGAAGGAATTAAGGACATTGTGGAGATCGCCTTGAAAAAAATGgattatgaCCACGATGGGAAAGTTTCTTATTCAGATTTTGAGAAGACGGTCAAAGATGAAAACCTTTTACTGGAAGCCTTCGGCAACTGCCTCCCAGACACAAAGAGCGTACTGGCCTTCGAGCAATACGCCTTTCAGGAACCACACGGACATTAAAAAGAACCGCTTCATTTTTTGAAACAGTATTTGTggctgaaactgaaataaatgtgtaaaatgtt

Function

symbol description
efcab1 Predicted to enable calcium ion binding activity. Involved in cilium movement. Orthologous to human EFCAB1 (EF-hand calcium binding domain 1).

NR:

description
EF-hand calcium-binding domain-containing protein 1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217875.1 True 1027 mRNA 0.45 6 12189282 12190901

Neighbor

gene id symbol gene type direction distance location
LOC122323775 fam206a,LOC107670282,LOC107556369,LOC107556344,LOC107710376 coding downstream 603211 11584050 ~ 11586071 (-)
LOC122323869 NA coding downstream 692669 11490127 ~ 11496613 (-)
csmd2 csmd2,LOC107698986,LOC107663732 coding downstream 1071001 10876437 ~ 11118281 (-)
col8a2 col8a2,LOC107564494,LOC107710560,LOC107724334,LOC107565043 coding downstream 1461275 10637428 ~ 10728007 (-)
ptp4a2b LOC107564493,LOC107670276,LOC107653869,LOC105012508,LOC103042327,LOC108257240,LOC107710550 coding downstream 1552391 10617563 ~ 10636891 (-)
LOC122323777 NA coding upstream 137 12191038 ~ 12192305 (-)
LOC122323778 LOC107567967,LOC107722131,LOC107670237 coding upstream 6974 12197875 ~ 12199318 (-)
calcr calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776,LOC107567974 coding upstream 189543 12380444 ~ 12415751 (-)
tfpi2 tfpi2,LOC107722157,LOC107670228,LOC107731825,LOC107667768,LOC107558578 coding upstream 229977 12420878 ~ 12423119 (-)
sgce sgce,LOC107731676,LOC107722147,LOC107665667,LOC107669779 coding upstream 306327 12497228 ~ 12508605 (-)
G132329 zmym4 non-coding downstream 7139 12159701 ~ 12182143 (-)
G132355 NA non-coding downstream 7915 12178945 ~ 12181367 (-)
G132353 LOC107722138,LOC107566772 non-coding downstream 11876 12174563 ~ 12177406 (-)
LOC122323784 NA non-coding downstream 18434 12162615 ~ 12170848 (-)
G132336 sfpq,LOC107394926 non-coding downstream 65287 12123604 ~ 12123995 (-)
G132363 NA non-coding upstream 57480 12248381 ~ 12249423 (-)
G132398 NA non-coding upstream 142550 12333451 ~ 12379151 (-)
G132417 NA non-coding upstream 261383 12452284 ~ 12452705 (-)
G132428 NA non-coding upstream 278019 12468920 ~ 12471830 (-)
G132429 NA non-coding upstream 292715 12483616 ~ 12484168 (-)
G132292 NA other downstream 356375 11832173 ~ 11832907 (-)
LOC122323871 ctnnal1,LOC107724361,LOC107670281,LOC107653856,LOC107710384 other downstream 432844 11709923 ~ 11756438 (-)
G132219 LOC105418166,LOC101068103,LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 1018369 11170270 ~ 11170913 (-)
trappc3 trappc3,LOC107653823,LOC107565048,LOC107564495 other downstream 1444153 10740374 ~ 10745129 (-)
ctnnal1 NA other downstream 1826755 10315621 ~ 10362527 (-)
bet1 bet1,LOC107669829,LOC107722155,LOC107731720 other upstream 244878 12435779 ~ 12438085 (-)
sem1 NA other upstream 406873 12597774 ~ 12669215 (-)
cart4 cart4,LOC107706148,LOC107591606,LOC107593588,LOC107731457,LOC107696592,LOC107670162 other upstream 836916 13027817 ~ 13029349 (-)
G132733 NA other upstream 1093630 13284531 ~ 13285461 (-)
G132784 eef1a1l1,eef1a1l2,LOC107742828,LOC100526699,LOC107696583,LOC107589443,LOC107706208,LOC107654700,LOC107696561,LOC102296947,LOC101482897,LOC102205261,LOC108247920,LOC107706209,LOC107589444,LOC107654701,LOC108426655,LOC108256978,LOC107591637,LOC107742829,LOC105892153,LOC108426629 other upstream 1303929 13494830 ~ 13502370 (-)

Expression


Co-expression Network