LOC122323777


Basic Information

Item Value
gene id LOC122323777
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12191038 ~ 12192305 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217880.1
ACAGTATGAGCATCACAGGAAGCGCAGCCAGCAGAAAAACAATCCAACCGGCGAGGTAAATGATTCTCACTATGGCTCCAGTGTTGGTGTTACTCATGGCGGCTCTTGTAGCTGCGGAGTCTGACAGTGCCTCTGTTTCTGTGGTTCACTGTGATACCTCCACTTATTGTCCTGATGGAACAACATGCTGTCTGAATCCTTACGGGTCCTGGGGCTGCTGTCCATACCTGATGGGCCAGTGCTGCAGAGATGGACTTCATTGCTGTCCTCACGGTTATTTGTGTGATTCGACATCGACCCATTGTCAGGTCGCGTGGTTGAGACTGTCATCTTCTCCCAGACTGGCCTTAAAAGCTATCCAGAAAACTCAGCCTGTGCTTTTCAAGCAGAAGAGCCAGACTGAGAAGGTTCATTGTGATGGAGATGTCTACTGCCCAGCTGAACAGTTCTGCTGCAAGACATCATCTGGCCAGTGGGGCTGCTGCAGCGGTTTGGTGCTGTAAATAAACAACCCCCGTGACCTGAATAAACCTCTCAAtaaaaactgccaaaaaaagGGGAAGAGGCTTGAAAATGTCAGGAAATTGTacttaatacaaaataaaatgcatcaatcGTA
>XM_043217881.1
ACCAACTTTCCTGTTTTTAAAGTAGGAGGAGCTGTGTGCATAAATATAAGAAGCACAGTATGAGCATCACAGGAAGCGCAGCCAGCAGAAAAACAATCCAACCGGCGAGATGGCTCCAGTGTTGGTGTTACTCATGGCGGCTCTTGTAGCTGCGGAGTCTGACAGTGCCTCTGTTTCTGTGGTTCACTGTGATACCTCCACTTATTGTCCTGATGGAACAACATGCTGTCTGAATCCTTACGGGTCCTGGGGCTGCTGTCCATACCTGATGGGCCAGTGCTGCAGAGATGGACTTCATTGCTGTCCTCACGGTTATTTGTGTGATTCGACATCGACCCATTGTCAGGTCGCGTGGTTGAGACTGTCATCTTCTCCCAGACTGGCCTTAAAAGCTATCCAGAAAACTCAGCCTGTGCTTTTCAAGCAGAAGAGCCAGACTGAGAAGGTTCATTGTGATGGAGATGTCTACTGCCCAGCTGAACAGTTCTGCTGCAAGACATCATCTGGCCAGTGGGGCTGCTGCAGCGGTTTGGTGCTGTAAATAAACAACCCCCGTGACCTGAATAAACCTCTCAAtaaaaactgccaaaaaaagGGGAAGAGGCTTGAAAATGTCAGGAAATTGTacttaatacaaaataaaatgcatcaatcGTA

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0048584 positive regulation of response to stimulus biological_process
GO:0002376 immune system process biological_process
GO:0002682 regulation of immune system process biological_process
GO:0002684 positive regulation of immune system process biological_process
GO:0050776 regulation of immune response biological_process
GO:0050778 positive regulation of immune response biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217880.1 False 619 mRNA 0.48 5 12191038 12192251
XM_043217881.1 True 657 mRNA 0.47 5 12191038 12192305

Neighbor

gene id symbol gene type direction distance location
efcab1 efcab1 coding downstream 137 12189282 ~ 12190901 (-)
LOC122323775 fam206a,LOC107670282,LOC107556369,LOC107556344,LOC107710376 coding downstream 604967 11584050 ~ 11586071 (-)
LOC122323869 NA coding downstream 694425 11490127 ~ 11496613 (-)
csmd2 csmd2,LOC107698986,LOC107663732 coding downstream 1072757 10876437 ~ 11118281 (-)
col8a2 col8a2,LOC107564494,LOC107710560,LOC107724334,LOC107565043 coding downstream 1463031 10637428 ~ 10728007 (-)
LOC122323778 LOC107567967,LOC107722131,LOC107670237 coding upstream 5570 12197875 ~ 12199318 (-)
calcr calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776,LOC107567974 coding upstream 188139 12380444 ~ 12415751 (-)
tfpi2 tfpi2,LOC107722157,LOC107670228,LOC107731825,LOC107667768,LOC107558578 coding upstream 228573 12420878 ~ 12423119 (-)
sgce sgce,LOC107731676,LOC107722147,LOC107665667,LOC107669779 coding upstream 304923 12497228 ~ 12508605 (-)
pdk4 pdk4,LOC107722149,LOC107669734,LOC107591595 coding upstream 366606 12558911 ~ 12568503 (-)
G132329 zmym4 non-coding downstream 8895 12159701 ~ 12182143 (-)
G132355 NA non-coding downstream 9671 12178945 ~ 12181367 (-)
G132353 LOC107722138,LOC107566772 non-coding downstream 13632 12174563 ~ 12177406 (-)
LOC122323784 NA non-coding downstream 20190 12162615 ~ 12170848 (-)
G132336 sfpq,LOC107394926 non-coding downstream 67043 12123604 ~ 12123995 (-)
G132363 NA non-coding upstream 56076 12248381 ~ 12249423 (-)
G132398 NA non-coding upstream 141146 12333451 ~ 12379151 (-)
G132417 NA non-coding upstream 259979 12452284 ~ 12452705 (-)
G132428 NA non-coding upstream 276615 12468920 ~ 12471830 (-)
G132429 NA non-coding upstream 291311 12483616 ~ 12484168 (-)
G132292 NA other downstream 358131 11832173 ~ 11832907 (-)
LOC122323871 ctnnal1,LOC107724361,LOC107670281,LOC107653856,LOC107710384 other downstream 434600 11709923 ~ 11756438 (-)
G132219 LOC105418166,LOC101068103,LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 1020125 11170270 ~ 11170913 (-)
trappc3 trappc3,LOC107653823,LOC107565048,LOC107564495 other downstream 1445909 10740374 ~ 10745129 (-)
ctnnal1 NA other downstream 1828511 10315621 ~ 10362527 (-)
bet1 bet1,LOC107669829,LOC107722155,LOC107731720 other upstream 243474 12435779 ~ 12438085 (-)
sem1 NA other upstream 405469 12597774 ~ 12669215 (-)
cart4 cart4,LOC107706148,LOC107591606,LOC107593588,LOC107731457,LOC107696592,LOC107670162 other upstream 835512 13027817 ~ 13029349 (-)
G132733 NA other upstream 1092226 13284531 ~ 13285461 (-)
G132784 eef1a1l1,eef1a1l2,LOC107742828,LOC100526699,LOC107696583,LOC107589443,LOC107706208,LOC107654700,LOC107696561,LOC102296947,LOC101482897,LOC102205261,LOC108247920,LOC107706209,LOC107589444,LOC107654701,LOC108426655,LOC108256978,LOC107591637,LOC107742829,LOC105892153,LOC108426629 other upstream 1302525 13494830 ~ 13502370 (-)

Expression


Co-expression Network