srsf4 (srsf4,LOC107569308,LOC107559403,LOC107754925,LOC107689552,LOC107668713,LOC108229131)


Basic Information

Item Value
gene id srsf4
gene name srsf4,LOC107569308,LOC107559403,LOC107754925,LOC107689552,LOC107668713,LOC108229131
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 3759857 ~ 3766404 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217898.1
ATAGAGGACTCTTACTTTGAATCTCGCGTATGTTGTTGCTGATTCTCCACGCCGAGCTGCTGCACCGGGAAAATGTCTCGAGTTTACGTGGGAAAATTGAGCTATCGCGCCAGAGAGAAAGATGTAGAAAGGTTTTTTAAAGGCTACGGGAAGATTCTGGAAGTAGATCTGAAAAACGGGTATGGCTTTGTGGAGTTTGACGACCCCCGTGATGCGGACGACGCCGTGTGCGATCTGAACGGCAAGGACCTTTGCGGGAAGCGGGTGATCGTGGAGCACACCATAGGACAGCGGCGTGACGGCGGCAGCAGATCTGGGAGAAGTAGTCGGTACGGTCGTGGAGGAGGGGAAAGGTACGGCCCGCCCACTCGCACAGATTACAGGCTGATTGTGGAAAATCTGTCCAGTCGCTGCAGCTGGCAGGACCTGAAGGACTACATGCGTCAGGCTGGTGAGGTGACTTATGCGGACACTAACAAGGGCCGCAAGAACGAGGGCGTCATTGAGTTCAGGCAGTACTCGGACATGAAAAGAGCCCTGGAGAAACTGGACGGCACCGAGGTCAATGGAAGGAAGATTCGGCTCATCGAGGACCGGCCTGGTGCCAGACGCCGCCGCTCTTACTCCCGCAGCGCCTCCAGGTCTCGCTCCAGGAGCAGGAGGTCCCGCAGGAGCCGGAGCCGAAGCCACAGCCGAACCAGCAGCCGCTCAAGGGCCTCGGGCTCACGGTCACGCAGCAGGTCGACCAGCAAGAAGGCGAAGGGCAGGAGCGGTAGGATGGAGGAGAGCAGTAATGGAGCTCGAAGGGCAGGTGAAAGCGCTAGGGATAATAGCACGAGCTGCAGCCCCCCGAGCAAAAAGAGCAAGCGGGAGAACAAGAGGGCTCGCTCCTATTCTCGATCCAGGTCCCGGTCCAGATCTCGATCCAAATCGGTGAACGACAGGGACGTCTCCAGAGAGTCTGGGTCCAAATCTCAGGAGGGAAACAAGAGCGGCGACGAAGGCCGGGCGGCTGACAGGGCACACCGCTCTAGAGCTCATTCTCGATCCAGATCACAAACGCCACCAGATGCCAATCTGAGGAGGGAATCCAGATCCAGATCCAAGTCTCGCTCACATTCGCGCTCGCGATCTTATTCCCGATCTCGGTCCCGCTCAAGGTCACGTtcttaagtttaaaaaaaaaacaaaaaacccaatTGCCGTTGTTTTTCCAGTCTAActaaacatcttttaaaacaaaaatatatcttaatttttttttttttttttaaaccccgCTGACAATTTGTCTCTAAATGGTTAGATTTGTgctataaaaaaagacaatgtgtGGTTGAGGTAAGAAAACAATCCAAATTCAAGATATCTGAAAACAAGTCTGAATATGTTACTTTTTTGTGTAAAGCAAAACGGTGCATcttgtttttacatatttttcttgaaaaagacaaaaatagacTGATTTGTCTAAATGTGTCTAAATGTCGTTCTGCCCTACGTTTTTCTTCTTTGacgcaagttttttttttttcttttgtcataGTTTAGTATTAGGGAAATTGCTTGCATATTCACATTTCAGTATTTACTGGTAATCGTTAaccttatgcattttttttttttttttttttgtagcgtttttattttaaaatttgcttgcaatatattttattcacaaagaCTGAGTAAAATTAAACCAACAGTAGATGTCCTTGCCTTTGCAttgtatatttagaaatgtaccATAGTTGTTGTTAAGCTGGGGCAGAGTTTATGGTCTTTTTACAACAAAGTTCtccatacaaaaataataaaaaaattaaaaaaaaactgcctcaCAA

Function

symbol description
srsf4 Enables mRNA 3'-UTR binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome and mRNA splice site selection. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in nuclear speck. Orthologous to human SRSF4 (serine and arginine rich splicing factor 4).

NR:

description
PREDICTED: serine/arginine-rich splicing factor 4-like isoform X2

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12893 SRSF4_5_6, SFRS4_5_6; serine/arginine-rich splicing factor 4/5/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217898.1 True 1844 mRNA 0.47 6 3759857 3766404

Neighbor

gene id symbol gene type direction distance location
tmem200b si:ch211-204a13.2,LOC107714467,LOC107668712,LOC107754915,LOC107569305,LOC107689563,LOC107559402 coding downstream 450 3754224 ~ 3759407 (-)
LOC122323724 LOC107689534,LOC107567588,LOC107754929 coding downstream 193975 3554796 ~ 3565882 (-)
tpbga tpbgl,LOC107700735,LOC107712598,LOC107550650,LOC107567595,LOC107689565 coding downstream 223564 3531244 ~ 3536293 (-)
zgc:175136 LOC107700788 coding downstream 241342 3515457 ~ 3518515 (-)
nudc nudc,LOC107689540,LOC107700719,LOC107567584,LOC107550646,LOC107729000 coding downstream 258425 3496699 ~ 3501432 (-)
zfpm2b zfpm2b,LOC107714469,LOC107668719,LOC107689530,LOC107754911,LOC107559400,LOC107569300 coding upstream 3133 3769537 ~ 3818856 (-)
rims2b rims2,LOC107689551,LOC107754909,LOC107569304,LOC107668707,LOC108257276,LOC107559391,LOC107732136,LOC107675654,LOC105892072 coding upstream 307636 4074040 ~ 4199242 (-)
cthrc1a cthrc1a,cthrc1,LOC107746934,LOC107668704,LOC107675657,LOC107754923,LOC108438867,LOC108257304 coding upstream 445035 4211439 ~ 4217713 (-)
mc5ra mc5ra,LOC107746932,LOC107552309,LOC107675655,LOC107754914,LOC107566557 coding upstream 478289 4244693 ~ 4267138 (-)
rnmt rnmt,LOC107668718,LOC107754922,LOC107566559 coding upstream 518888 4285292 ~ 4296757 (-)
G130238 LOC107578025,LOC107689532,LOC107754917,LOC107712605,LOC107550649,LOC107700780 non-coding downstream 137357 3548936 ~ 3622500 (-)
G130252 NA non-coding downstream 168850 3589262 ~ 3591007 (-)
G130250 NA non-coding downstream 173238 3586144 ~ 3586619 (-)
G130249 NA non-coding downstream 174106 3585349 ~ 3585751 (-)
G130232 ta,LOC107550642,LOC108411273,LOC107689566,LOC107700831,LOC104926085,LOC108272420 non-coding downstream 268721 3486222 ~ 3491136 (-)
G130340 NA non-coding upstream 131657 3898061 ~ 3953014 (-)
LOC122323451 NA non-coding upstream 186214 3952618 ~ 3973047 (-)
G130341 NA non-coding upstream 283409 4049813 ~ 4065292 (-)
G130352 NA non-coding upstream 406147 4172551 ~ 4195691 (-)
G130355 NA non-coding upstream 415095 4181499 ~ 4205926 (-)
tmem222b tmem222b,LOC105903612,LOC107550652,LOC107754919,LOC107567586,LOC107700749 other downstream 208032 3537441 ~ 3551825 (-)
kdf1b LOC107700730,LOC107712602,LOC107550653,LOC107754920,LOC107567594,LOC107689538 other downstream 245178 3508834 ~ 3514679 (-)
zdhhc18b zdhhc18b,LOC107700701,LOC107737765,LOC107689541,LOC108413341,LOC107550656,LOC107570996 other downstream 379930 3363481 ~ 3379927 (-)
LOC122323345 fam46bb,LOC107712594,LOC107700817,LOC107737782,LOC108413340,LOC103370123 other downstream 436029 3313389 ~ 3323828 (-)
G130083 LOC103461248,LOC102786159 other downstream 610068 3149154 ~ 3149789 (-)
polr2k NA other upstream 773575 4539979 ~ 4541629 (-)
G130696 NA other upstream 977168 4743572 ~ 4941832 (-)
LOC122323502 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other upstream 1320840 5087244 ~ 5222883 (-)
G130744 sema4ab,LOC107702572,LOC107672813,LOC107598230,LOC107731578,LOC107705066 other upstream 1375101 5141505 ~ 5260164 (-)
G130763 NA other upstream 1478949 5245353 ~ 5252189 (-)

Expression


Co-expression Network