LOC122323836 (LOC107598234)


Basic Information

Item Value
gene id LOC122323836
gene name LOC107598234
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5569730 ~ 5571271 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217936.1
ACAAGCCAATTCAcaattttaggattattttcattaattgtgCTGTGCTAACTCAtatattgatgttttatatCTACAGAGGAATCGCTAGAATGGGAGATTGAAAAAGTGGAGAAATCCATGATCAGCATGGAGTGGCTGGAGGACCTGCAGAATACCATAGACGAGTTTCAGTCCAATATGGTATGCAATGTGAGCCGCCTTCGAGAGAACTTCAGAAAAATGCAGGAGGTTGCATCTAAAAAAGTTCTGACCATGAAGCCGAAAGGTAAACCAGGAAAAGAGCTGGATCCCAAATTAGTTAAAAGCATCCAGTCTCTGCCGCCCTGTCCCACGGTAGCAGAATTGAAAGCGAATTCAACCACAGCATCAGTGTATTCATCAGACCTGATCAGCGTGTTGAATAGCATCACCAAAACAGCCTCCTGCAGCCCAGCCATGAGCAAGGCGCTGAAACTATCAGCAGCGACCATTGAAAACCTCAACAAGGCTTTTCAAGATCACTGCTCAGAAATTAAGACCCTCAAGACACCTCAGAAAAAGAGCGACGTGGCTCAAGATGTGAACAGACGCGTCTCTGTTCCTTCTGTATATCAAAATGGATCTAAAGTCCAGCATCATATGGTGAAAAAATTGTCTGCCTTTCCTGTGAAACCCAAGGCAGATGATTTTGCTTTCCCTCAGGTCAAAGAACCTGTACGAGAGACAAATATTGAAGACACAGCTCCAAAAGCTCTCCTTGATGGAGCATTTCTTCCTGCCCCTGCCAGAACTTTTGCTCTCCGCAAGAACACAGGATCTGTCAAGGAGACGAAAGTTACCAGAGAAGAAATGGCAAACTTCACGTCACTTGAAGAGGTTTCACGACCTGTAGAGATGGCAAAAGTTTATGCCATGCCGTGGAAGAACGCCAGAGTCTGTCTCCTGTCCACACCGTCCTTCCTCATCTGTGAATCTGCCCCGAATTCAGACTCAAGTCAAGCCATCACTTCAGAAGTCCGGCAAGCCGAGACTCGCAGATATGCTTCTGCAGTCTCGGGCAGCATTGAGGAGCTGTACATGGAGAAAAACGAGGAGGACGTTGACAAACCGCTTCACGCAAGCACGAAACGCCCATCATTCGTGATTGACATCAAAGCTCAAGAAAACAACCTCCAGCAGCTGGATCAAgcttttcaaaataacagcatttcctCTGAAATGTACAACCTGTGCAGAGGAACCGTCAATCAGACACTTAAGAGCGTTGAGCTGCGTCTTGGATGTCTTTTACGGAGATACATCCAGCATGTGCAAATGAAGCAATTAAGGTAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107598234

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217936.1 True 1314 mRNA 0.45 3 5569730 5571271

Neighbor

gene id symbol gene type direction distance location
LOC122324215 NA coding upstream 36843 5531960 ~ 5532887 (+)
eya3 eya3,LOC107738590,LOC107731567,LOC107672865,LOC107702484 coding upstream 69134 5484922 ~ 5500596 (+)
si:ch211-195b13.1 si:ch211-195b13.1,LOC107738591,LOC107672866,LOC107702504,LOC107731568,LOC103036792,LOC108411161 coding upstream 86062 5471782 ~ 5483668 (+)
LOC122323295 NA coding upstream 144942 5407049 ~ 5424788 (+)
si:dkeyp-92c9.2 si:dkeyp-92c9.2,LOC107598237,LOC107571465,LOC107738595,LOC107731579,LOC107672824,LOC107702702 coding upstream 216470 5344211 ~ 5353260 (+)
LOC122323266 NA coding downstream 41797 5613068 ~ 5614130 (+)
rpa3 rpa3,LOC107754810,LOC107598208,LOC107672835,LOC107731561,LOC107702426,LOC107568286 coding downstream 145425 5716696 ~ 5717681 (+)
col28a1a col28a1,LOC107754784 coding downstream 154097 5725368 ~ 5739185 (+)
LOC122323385 sdhaf3,LOC107702681 coding downstream 304779 5876050 ~ 5882974 (+)
jarid2b jarid2b,LOC107754814,LOC107694367,LOC107702394,LOC107731546 coding downstream 490278 6061549 ~ 6162543 (+)
G130833 NA non-coding upstream 20931 5548507 ~ 5548799 (+)
G130813 LOC107672812,LOC107598225,LOC107571454,LOC107738589,LOC107672867,LOC107731566,LOC107571461 non-coding upstream 64316 5503266 ~ 5505414 (+)
G130664 NA non-coding upstream 164164 5404453 ~ 5405566 (+)
G130676 NA non-coding upstream 183613 5382816 ~ 5386117 (+)
G130677 NA non-coding upstream 184182 5385136 ~ 5385548 (+)
LOC122324017 NA non-coding downstream 39717 5610988 ~ 5612338 (+)
G130855 NA non-coding downstream 42993 5614264 ~ 5632428 (+)
G130858 rims3,LOC107672861,LOC107598211,LOC107702460,LOC107731575,LOC107571463 non-coding downstream 88262 5659533 ~ 5670532 (+)
G130861 NA non-coding downstream 103024 5674295 ~ 5674844 (+)
G130890 LOC107731557,LOC107702657,LOC107568288 non-coding downstream 217295 5788566 ~ 5924971 (+)
G130640 txnipa,txnip,LOC108410889,LOC107672857,LOC107738596 other upstream 255552 5223700 ~ 5314178 (+)
LOC122324077 NA other upstream 341504 5225081 ~ 5228226 (+)
LOC122323259 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other upstream 390053 5176270 ~ 5179677 (+)
G130637 NA other upstream 406331 5162586 ~ 5163399 (+)
G130613 LOC107745035,LOC100705094,LOC102198470,LOC101485383,LOC107563920,LOC102785635 other upstream 586486 4977885 ~ 4983244 (+)
LOC122324139 LOC107598234,LOC107672810 other downstream 12234 5583505 ~ 5585655 (+)
LOC122323254 sdhaf3,LOC107702681 other downstream 174530 5745801 ~ 5752917 (+)
LOC122323983 tac1,LOC107702667,LOC107731560,LOC107754813,LOC107672864 other downstream 213859 5785130 ~ 5922973 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other downstream 800564 6371835 ~ 6401298 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other downstream 891812 6463083 ~ 6488760 (+)

Expression


Co-expression Network