sox4a (sox4a,LOC107694328,LOC107584287,LOC107754846,LOC107711341,LOC107691508)


Basic Information

Item Value
gene id sox4a
gene name sox4a,LOC107694328,LOC107584287,LOC107754846,LOC107711341,LOC107691508
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 7234807 ~ 7238683 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217946.1
GAGCGCGAGCTCCCAACACAAACAAGAGCATGCTGCCTTTGAATGGAGAAGCGCGTGGCATGTGGGCGCGCGCTGTCTTTGTGTGTAAAAAAGCGCACCGCGCCGCGTACGTctaatattaattatgatttcgctttgtttttttttgttttttagcgAAATTATATTCGTGTCGCAATTCAACGCCGTAAATAGCAATCCGCAGACGATTTGTGCAAGTCAAAGGAAAAAGGCTTAATTGCGAAAAGATGGATTTATCAATCCTTGGATTTAATCCGCGTTATCGCTCGTAATCGAACATTAGAATTGCTTATCCTAACTTAGGCACCCCTGCCAAATTCTGCCTGCGATCTAGGAAAGGGGGAGTACATAATGCGCCTTTAAAACTAAGTTTGCAGTGTAGATGGAATGAGGTCAGACAGAAAGCTTCTCATTGCACGCGCCGATTATTATTAGATACTATATTCAGCCAATGGACTGCGACGGGGCGTGGCTCTGGCCGAGGATAGGCTAGTGACagcagctgattggctggattCTCTTTCCTTTATACCTTCGGAAAAGGATAAATCCTTGCGAGGCGGTTTAGCAGAAGTATTGAAAGTTGTGAAGGGTGATAGGAAGCTCAGAGCATGAAAAAGTGCAGTCGCCTAAACCTACCGCATGGTCATACGACAAACTATGCTGAAGACACTTGTCCGTTTCCACTGAACGGCTTCAGATACTTCGCGTCCAGAGCGCACTCTGGGTTCGTTTTCAGTCGAACCGGCAGTTGAACGGCAGACTGTTGATTTTGACGACATTGCCGGGACTTGACAGAGCTCCTGACGGGAGGATATGCGCCTTTGTGGACGGCGCGCTGAACCAAGAGACAGTCAGCGGCGGCAGCAACTTTGTTTCCAACACTGACTAAAACCACACCGCGAAGAAGAAACTCTTAGCGCTCCCCGAGCTGCAGCACGTGTAGGATTTTCGTGCGCAATTAAAAGTTAAGACTGTTGCGGTGAGTGCATGGGCACAGACCTGGCTATGGTGGAGCAGACGCACATGAGCAACAACAGCGACGCGCTCCCCGGCGATTCCACCGATTCTGGGGAGATGGACCTAGACATGGACGCCTCCCCGACTCCCGGCTCTCCAAACTCGGCTGGGGATAAAATGGACATCGCCTGGTGCAAAACCCCATCGGGGCACATCAAGAGGCCGATGAACGCGTTCATGGTCTGGTCGCAGATAGAGAGGCGCAAGATCATGGAGCAGTCGCCGGACATGCACAACGCGGAGATCTCCAAGAGACTCGGCAAGCGCTGGAAACTTTTGAAAGACAGCGACAAGATCCCCTTCATCCGCGAGGCCGAACGGCTGCGGCTCAAGCACATGGCAGACTATCCAGACTACAAATATCGACCTCGGAAGAAGGTGAAGTCATCCAGCGGCAAGAGCGCGGAGAAGGCGGAGCGCGTGAGCGGCAGCCCCGGCGCGAAGTCTGCCTCCAAGAAGAGCTCCAAAACTCTCAGCAGGACGCACAGAAAGTCCGCGGCGCTGGAGCTGACCTCCCACTCCGTGCCGGCCGACCACCACGCTCTCTACAAGTCCAGGTCGGCGTCCGCGGCCAAACAGATCCCCGAGAAAGCAGCAAAGCGCGGGCACGCGTTCGGGGGATGCAGCTCTGATAGCAGCCCGCCCTCCGTCGCCGTGCCGGCCAGTCCCACTCTGAGCAGCTCGGCGGAATCCAGCGACCCGCTGAGCCTCTACGAGGACGGGCTCGCGAGCGGAAAGGAAGACGCGGAGCCCGCCGCGCGCTTCAAGTACACCCGCGCGCCGTCCCCGACGCCCTCCGCCTCGCACTCGTCCTCCTCGCAGTCGTCCTCTTCGGACGAGGAGTTCGAGGACGAGCTGGCGGACCCCAGCCCCGGCTTTGACAGCTTCAGCACCTTTGGCACCGCGCCTCTGGACAGAGATTTGGAGTTCAACTTTGAGTCCGGCTCCGGCTCGCACTTTGAGTTCCCCGACTACTGCACCCCAGAGGTGAGCGAGTTGATATTAGGGGACTGGCTCGAATCGACGATATCCAACTTGGTGTTCACTTACTGAGCGCTGGTTGCGAATGGACAGATTGAGAAAATGACCGGagggctgcaaaaaaaaataatcctcCGAGACGAGTCAGACGACGAGTCAACGACGTGATTCCTCGTGTTTATCATGCATCAGATACTGTGGGTTCTCATTATCCACTGACAAGAGTGCAGATGAAAGTGCTTAGCTTGCTCGTTTGGTGCTGGAAGGAGGCGCGCTTTTGGACGCGGGCGATGGGGGGTCATCGCGCGGTGGCGAGTTCCCGCCGCGCGCCCTCCTCGACTTTAAAAAGGGACGTTTTTAAACGGAAGACAAGTCTGGTCGCATACGCTTGATTCGATGGAGGTACTGAACGGAGAGCgcgcgagcgagcgagcgcgcGACTCGTTCCGTGCGCTCGCGGTTGTTTACCAGAACCGTGTGTTAGACCAGCATCGCATGCTTTCATTACGATTTAAGGCTGTTGAGAAGCGAAACTGGTGTCGATTCGTCGAAACCGAACGGCAGCGCCGCACGAGacgcaaaaacaaacacaatcacCAGCTTTCCTGTCGCCATGACATCAGGATTCAGACGCAACTCAGATGATTCGACTCTTTACACTACAAATCAGGACCAAAATTCATCCGAGGAGCGTTttccctctctccttctctctctatCTGCCTTTTACTTTTTCATCCTCGTAACTTTTCGGCGCTGGCATTTTTTATATCGATGTATTTATAACGGCCAAACATTGCTCCTCTCCTCCCCTCCGTCGCTCGTGTTCTAGTCagtctgttgtgtgtgtgtgtgtgtgtgtgtgtgtaggctacACACGCACATGTCCGTCTGTCTCGCGGAAGGGCTAGACTCGTTTCGTATTATTTAATTGATGACCTCTCACGTGGAACGGAgattaaatgtttcattattttctgagtgtatttttgtacaaaatctATCGAGGGGGTGTCAATCGGTGAATATCGCTGTTTGGATTTCCGATTTTTAAAGCCAGGGGGTTGGGTTGTCTCCAAAAATCTGCCCCCTAAACATGTTTACAGTGTCAATCCACAGgcttcttaaagagacagtatcTGCATTTCCACGACCAATCGTCTTTAGCCTACGATGCGCGCGCTGAGCGAGCTTGTATGTAGCTGCAGCAGCGACAGCTGCGATTTATCGCGTCCTTATTGGGGATACTGTACTTTTTTGAATACCGATTTCTTTGTGCTTTTATAGTGACACGTTTCGGTTTGAACCACTGGATGGAATTACAGATACGGTCGAAATGCCTATAATTCACGAACAATGAAGTACGTCTTCACTCCATAATTGTACAAGGATATTTAATCTTTTCTACTTGTTGGCTAAATGTAGCTAATTGTTTTAGTATATTATGGCATGGCGAATAGCATTTTGTATTTCTGAATTCAGGTTTATGTAGAGCAGTTGTGTTTAAGGCAGAGGATCAACATGAAGATTTCTATGTACATTGAgtgtaaaataagtaaaagatTGCGTGTTTATGTCTGACGATGATATATCATGACAGGAACGAGAACATATATCTTTATACATCCCTATGTTTAAGAGTGTTGTTCATGACTTTTGGAATATATagatatgttttattgtttcattttgtgcaaTATGCTGTGTACAATATCGTTTTGTCTTGCCATACCATATCTCAACATTTGAGTAGTGAACTCAAAAGCCAGCCAATTGTGTCAAGTCACTGCCTGTCAGACCTCTGTACAGAACTTTGTCTTTTTCCAAGAAGGAAATAAAATCAGCTGGAACTGAA

Function

symbol description
sox4a Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within closure of optic fissure and negative regulation of smoothened signaling pathway. Predicted to be located in nucleus. Is expressed in several structures, including anterior neural rod; digestive system; nervous system; neural tube; and periderm. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome and urinary bladder cancer. Orthologous to human SOX4 (SRY-box transcription factor 4).

NR:

description
PREDICTED: transcription factor SOX-4

GO: NA

KEGG:

id description
K23581 SOX4; transcription factor SOX4 (SOX group C)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217946.1 True 3877 mRNA 0.50 1 7234807 7238683

Neighbor

gene id symbol gene type direction distance location
nrsn1l si:dkey-261i16.5,LOC107754809,LOC107694315,LOC107584359,LOC107711299 coding downstream 2680 7074386 ~ 7232127 (-)
ndufs6 ndufs6,LOC107754843,LOC107711315,LOC106570329 coding downstream 191461 7042113 ~ 7043346 (-)
irx1b irx1,irx1b,LOC107754808,LOC107584361,LOC107711312,LOC107691543,LOC107595626 coding downstream 253381 6977815 ~ 6981426 (-)
ube2ql1 ube2ql1,LOC107711339,LOC107754840,LOC107691500 coding downstream 335002 6889271 ~ 6899805 (-)
tent4a papd7,LOC107694334,LOC107691498 coding downstream 385119 6834886 ~ 6849688 (-)
e2f3 e2f3,LOC107687070,LOC107745724,LOC107691507,LOC107562874,LOC107709295,LOC107584335 coding upstream 329860 7568543 ~ 7575504 (-)
LOC122323247 LOC107687071 coding upstream 337497 7576180 ~ 7581234 (-)
fndc5b fndc5b,LOC107584283,LOC107687074,LOC107691512,LOC107709291,LOC107562878,LOC108433842,LOC108238726 coding upstream 373304 7611987 ~ 7630756 (-)
eif3i eif3i,LOC107687089,LOC107745717,LOC107709286,LOC107691510 coding upstream 535282 7773965 ~ 7777114 (-)
txlna txlna,LOC107709285,LOC107691504,LOC107687085,LOC107562872 coding upstream 538790 7777473 ~ 7784225 (-)
G131265 mrpl36 non-coding downstream 189845 7043507 ~ 7044962 (-)
LOC122324041 NA non-coding downstream 349364 6883962 ~ 6885443 (-)
G131166 NA non-coding downstream 474359 6760174 ~ 6760448 (-)
G131165 NA non-coding downstream 479372 6754414 ~ 6755435 (-)
LOC122324261 NA non-coding downstream 530870 6703871 ~ 6703937 (-)
G131305 NA non-coding upstream 21612 7260295 ~ 7262610 (-)
G131318 NA non-coding upstream 115461 7354144 ~ 7355700 (-)
G131363 NA non-coding upstream 329265 7567948 ~ 7590147 (-)
G131411 NA non-coding upstream 711106 7949789 ~ 7950001 (-)
G131413 NA non-coding upstream 748837 7987520 ~ 7988325 (-)
srd5a1 srd5a1,LOC107691541,LOC107711310,LOC107595623,LOC107694335 other downstream 376147 6850369 ~ 6858660 (-)
polr1h znrd1,LOC107584303,LOC107754832,LOC107677479,LOC107694346,LOC107595594 other downstream 585418 6648390 ~ 6649389 (-)
sh3bp5lb sh3bp5lb,LOC107711328,LOC107677461,LOC107694325,LOC107754828,LOC107584304,LOC108435520 other downstream 595587 6627598 ~ 6639220 (-)
G131006 LOC107754818,LOC107731580 other downstream 871635 6362347 ~ 6363172 (-)
LOC122324254 NA other downstream 1829171 5404516 ~ 5405636 (-)
LOC122323893 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other upstream 117938 7356621 ~ 7360143 (-)
LOC122324169 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 other upstream 156497 7395180 ~ 7397946 (-)
LOC122323248 LOC107687071 other upstream 207075 7445758 ~ 7451916 (-)
G131373 NA other upstream 363450 7602133 ~ 7605143 (-)
khdrbs1b LOC107745714,LOC107691518,LOC107584277,LOC107687088,LOC107709277,LOC107562753 other upstream 880266 8118949 ~ 8129270 (-)

Expression


Co-expression Network