LOC122323870 (ctnnal1,LOC107670281,LOC107724361,LOC107653856,LOC107710384)


Basic Information

Item Value
gene id LOC122323870
gene name ctnnal1,LOC107670281,LOC107724361,LOC107653856,LOC107710384
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 11535963 ~ 11582937 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217976.1
ATGAACAGTTCTTCACTCAGAAGCCCAGGCGCGCGAGAATGGGCGAGACAGACGGAGGATCTGCGACCTAAACCAAACTATGTGCTCGCGGAACTGACTGCGGGCGCGGAGATTGAAACTCGCTCGGTGGGGCAGGCACTCATCCCGCTCGTGTCTCAGATTACCACACTGATCAATCACAAAGACAAGCTCAAGAAGACGGAGAAGACCTTACGGGCCATCCAGAGAGTGGGGCAGGCGGTCAGTGTTGCAGTTGGCCGCTTCGTGGCGGTGGGTGAAGCCATTGCAGCAGAGAATGAAGACTTGAAGGACGAGATGGGACTGGCTTGCTTTGAGGCCCGGAGAGCAGGCACTGCCATAGCTCAGCTGACGGATGTGTCCTGTCTGGAGCAGTGTGAGGGCGATGGGCGCAGCACTGTGTTTAGTGACAGGACCGGCATGGTGAAAGCTGCTCGCATGCTGCTCTCCTCTGTTACCAAAGTCCTGGTGCTCGCAGACTGCATCGTTATCAAACAGATCATAAGCTCCCGCAACAAAGTGCTGGTTACCCTGGAGCAGCTGGAGAGAGTCAGCACTTTTCAGGAATTTGTCCAAATCTTCAGCCAATTTGGGAACGAGATGGTAGAGTTTGCCCATCTCACAGGAGACAGACAGAATGATCTgaaggatgaaaagaaaagagctcGGATGGCCGCCGCACGTGCTGTGCTGGAGAAATGCACCATGATGCTCCTCACAGCCTCTAAGACTTGTCTGAGACATCCAGACTGTGAGTCGGCACGGATCAACAAAGAAGCAGTCTTCCAGCGTATGCGTCTGGCCCTGGAGCAAGTCATTGAGATTGTGACTGACACAAGGAGCGGTGGGGAGACCAAAGCACTTCCTGTCAGCATCTACGCTGGGATTAGAGACTTTAAGGTTAAAGTGGAGGGTCTGAGAGACTCTCTGTACTGTGTGTCCTGTGAGGCTGTGGCGGCTCAGCTGGAAGCTCTGGTGGAGAAAACCGAAGACTTTACAGACTCTGCCTACACCAGCCATGAGCAGAGAGAGACAATCATACAGCTCTGCCAGATCACACGTCAGGAGACCAAACAGCTCATCAGCACATGGAGACACGCGCAGCAATCGCTTAAAGCCAAAGAGGCCACGGACGAGGTGGAGCTCTCTATTTTGAAGACTTGTCAGAGTGTCAGCGATCTCAGGCGAGAGcTTCATAGGGTGGCGGTGGGAAGGGCCACTGAGCTGCTGAAGCTGCATTCAGATCATCTGGTGCTGCAGGCCCTGAAGGCCTCCGGTGGGGATGGAAACCTGGAGGCTGTGGCTGATTATGCCGGCACACTGACTGAACACAAAGAGCAACTGGTGGAGACTTGCCGTTTGCTCTGCCACATTTCTGGGACTGAGCCGCTGGAGATCACCTGCGTTCATGCTGAGGAAACTTTCCGTGTCATTGGTCCTCAGATCATCTCAGCAGCACAGACCCTTGCTCTGCACCCCACCAGCAAGATTGCCAAAGAAAACCTGGATGTGTTTTGCGAGGCCTGGGAGTCCCAGCTGTGCGACATGGCCATCCTACTGAAGGAGATCAATGATGTGTTTGAGGGCCGCAGAGGTGATAAGAAAACATATCTGTCTCTACCCAGACCAGGGAAACACTCTGCCAACCTGAAGACGGTGAAGGCTGCCAAACTTGACGCTGAGGAGCAAACCACCATCGCCAAGCTTGGGCTGGAACTGTGTCTCCTCACTTCAGATGTGGACTCAGAGGTGGAGCGCTGGGACGAGCAGGACCACGACATGGTTCGGCTGTGTCAGATCATATCCAGCATGGCTTATTCCATGTACCTCTTCACCAGGGGGGAAGGCCTACTGAAGACAACTTTGGATCTATTCCACCAAGCCGAGgtgttGTCAGACCAAGGTCTCCAGCTGTGCCACATCCTCCACTCTCTCTGTGCGCAGCTGCTGGATGAAGACAGAATCCTTATTCTGTCTGAGACCGAGAAGCTGTCAGCCGCATGTCAACAGCTGCAGGTCTGTGCCAAGACTCCGGTTCAGGGCAAGAGCGCCATCTTTCAGAAGGTCGACTCATCCATACAGAATACCAAAGGCATTTTGACAGTGGTGGTATATTTACTGCCCATCTGTAATAAGCTCATCAGAAAGTGTAAAGCAGAGCGCAGCTGTCTGGCTTCACCTCAGCACTGGAGGGAGAAGCAGCTGAGCACGACCGTCAGCGAGGAAAATCTGAACGGCAAAGGCTCCAACGGCTTCGGGGTCAAATCCTTGGAGCAACACATGGCCAATCTAACATTCCTGGAGAGCAAATAGCTCTGAAAACCAAAGGCTCTTCTGCCTGTTGTCGCGCACACAGTGCATGGCAATGCACTCGCACACAACGTGCCATTCTTTGTGCTTCTGCCCATTCGCTTTGTGGTGTACGATAGCGTTAGCATTACCAGCCTCATTCCAGATaccaaaaaaaatagataaaaaccCTTCATTGCATGTGTTCAGGTCATTATGCGATTCTTTCAAGTGTAATGGCTGGTAAATAAGCTACGGTTTTAACCGAATATTCAGCTGCGTTTCTCGTGATTAGCCAACATTGAGGTGTACGTGGTAAAAGTtttgatgcaaaaaaagaag

Function

symbol description
ctnnal1 Predicted to enable actin filament binding activity and cadherin binding activity. Predicted to act upstream of or within Rho protein signal transduction and cell adhesion. Predicted to be located in cytoplasm and cytoskeleton. Orthologous to human CTNNAL1 (catenin alpha like 1).

NR:

description
PREDICTED: alpha-catulin-like

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0045296 cadherin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217976.1 True 2649 mRNA 0.52 20 11535963 11582937

Neighbor

gene id symbol gene type direction distance location
LOC122323767 pef1,LOC107664714,LOC107726139,LOC107712637,LOC107698987 coding upstream 14727 11515528 ~ 11521236 (+)
LOC122323771 NA coding upstream 22072 11511343 ~ 11513891 (+)
LOC122323768 LOC107726138,LOC107664713,LOC107563276,LOC107555946,LOC107698981 coding upstream 25441 11507272 ~ 11510522 (+)
LOC122323863 NA coding upstream 414962 11119263 ~ 11121001 (+)
angpt2b angpt2b,LOC107663733,LOC107724362,LOC107564496,LOC107698979,LOC107710743,LOC107565051 coding upstream 751805 10763151 ~ 10784158 (+)
LOC122323759 LOC107660582,LOC107714390,LOC107657518,LOC107584150 coding downstream 181937 11764874 ~ 11772074 (+)
LOC122323766 NA coding downstream 485395 12068332 ~ 12070856 (+)
LOC122323780 NA coding downstream 493644 12076581 ~ 12077830 (+)
LOC122323872 NA coding downstream 498311 12081248 ~ 12084831 (+)
LOC122323773 NA coding downstream 514154 12097091 ~ 12098898 (+)
G132227 NA non-coding upstream 141014 11394557 ~ 11394949 (+)
LOC122323901 NA non-coding upstream 457025 11076694 ~ 11078938 (+)
G132180 NA non-coding upstream 655388 10875871 ~ 10880575 (+)
G132081 NA non-coding upstream 838127 10632648 ~ 10697836 (+)
G132266 NA non-coding downstream 124075 11707012 ~ 11707249 (+)
G132267 fam206a,LOC107556369,LOC107670282,LOC107710376,LOC107556344 non-coding downstream 124584 11707521 ~ 11708463 (+)
G132269 NA non-coding downstream 126033 11708970 ~ 11709872 (+)
G132291 NA non-coding downstream 249236 11832173 ~ 11832908 (+)
G132298 NA non-coding downstream 477100 12060037 ~ 12060379 (+)
LOC122323782 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other upstream 12082 11522229 ~ 11523881 (+)
zgc:91910 zn706,LOC107556412,LOC107574718,LOC107710523,LOC107670289,LOC104962755,LOC108425704 other upstream 1117867 10415640 ~ 10418096 (+)
triqk triqk,LOC107724370,LOC107710222,LOC107702072 other upstream 1782407 9734220 ~ 9753556 (+)
G131801 trib1,LOC107724318,LOC107565192,LOC107702074,LOC107710180,LOC107556392,LOC107653840 other upstream 1897002 9636973 ~ 9638961 (+)
si:ch211-215i13.3 LOC107579802,LOC107724304,LOC107702091 other upstream 1997461 9536318 ~ 9538502 (+)
LOC122323774 NA other downstream 528342 12111279 ~ 12112897 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other downstream 840353 12423290 ~ 12425078 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other downstream 1438480 13021417 ~ 13026026 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other downstream 1726490 13309427 ~ 13336749 (+)
G133066 ext1c,LOC107654729,LOC107706241,LOC107592050,LOC107754264,LOC107592945,LOC107688378 other downstream 3204607 14787544 ~ 15212430 (+)

Expression


Co-expression Network