si:ch73-109i22.2 (LOC107748764,LOC107667791,LOC107739537,LOC107656629,LOC107599558,LOC107579479,LOC107565563)


Basic Information

Item Value
gene id si:ch73-109i22.2
gene name LOC107748764,LOC107667791,LOC107739537,LOC107656629,LOC107599558,LOC107579479,LOC107565563
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 16959151 ~ 16966115 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217989.1
CAAAAGCAGATCGTCAGATTGTTCATTTGAGCTTTAGTACATcagttaaatatttcacaagaaGTTTCAAAATGAAATCTGCACACTATCAGCTCTATGTGACCTTTTTCCGCTCTCTATTTCTCGCCCTCGCACATGCATTTAAACAGGATGAGGCAGAAACACTCAAGAACCGATAGGAAGAGGTAGCGTTTTACATCCTGCGCTTGAGAATGGACTTTGACTACCAAAAGATTAAAGATGCTGAATCTCAGCAGAGAGAGGAGCGACTGAGCGATCTTTCTGCCCACTACCCAAGACCAAAGCCACGTCCATTTCTGGATCCAGAGAACAATCTCACGACCAAGAAACCGCCAGTAAAACCCCGGCGGAGCATAAAGATTCGTTCCACAGCACAACAAAAGACAGAGCAATTAGACCAGGGCCAGCAGAAGGAAAATGAGACCACAGTGAAGCGGATAGATCCTGCTCTGGTTTTGGGTCCCTTGAGGCCCCTGGAGTGTCTGTCTCCGTCTCTGCGCGCTCACACTCTGCTGTGGTTTGAGAGAACGCAGCTGCCTCGACTGCACAGGCCCGGACAGCCTCTTCCTCGCTGGCTCCATGGTTTCGCTACACGCAGGGAAGCAGAACAGCTGCTGCAGGATAAGCCGCAAGGCTGTTTCCTGTTGAGGCTCAGCGAGTCAAAGATTGGCTTTGTGCTGTCTTACAGAGGAGAAGACCGATGTCGTCATTTCATAATTGAAGAGGAGGAGTATGGATCATCTGGTAGTGTATATCTCATTGCTGGAGAACACAGCCATCATAGAAGCCTGGATGAGCTAATCAGCTACTACACCCATAATCCTGTGGGGCCTTTTAATGAGATGTTGACTGTACCTTGTATGCAGCCTGATGGGAGTTTTGAGGAAATTAATAGGTGGAGGGTGaaagatgaggaagaggagaaaaaTGGAAAAGCAACAGATCGAGAGAAGCAGACAAACCTGGCCGAGGCCATCGGCCCAGCTGTTCTGAACTCCTTACACACAAACCCCTCCAGTGAGATCACTTCTGCTACAGAAGAGCCTGTGCAGTATGCAGTCGTGAGAAAACCACTGAAAAAGACCCTCTCGCTGCCAGAATGCAAGTGTGGAACTGAAACAGAGCCTCCTGGCCTTGAAAATGGCAGTTCTGACGTTGCTGAAAGCCCCTCAAATCTTAATCTAAAAGGAGATCAAGTTTCTCTTGTGGATGTCCAGTATGCTCGAGTTAACAAACCCCCCAGACTATTATCAGAAAACACCCCCAACCTCACTGCCCACCCTGACCTTCAGGGAGCAACAGCAGCCTTTACCCCTCCATCCATCCCAAACTTCGACACGACAGCAGCAGACCCGAAATACTGGAAACTGGAGCCAATGCACACTTACGAAGAGACCCCCCACACACGCAGTCGTCCAGAAGAAATTGACTGCTATGCTGTCGGGTGGAGGAGGCAGGCGGCGGGGGATGAAGTGAACCTTCCAAAGGATCACCTGTATTCAGAGGTGAACATCAAAGGGGCCCAAGAAGGCGTTGCTGTACTGAGACCCGGGCCTAGTCTTCCTCTTAGACCGCCCCCGAGATCTGCTCCTTTGCGACCCGAGCTCATCGGGCAGACAGCTCAACCTCAACACTCCGGTTTTCATCATTCAGATCAGCCGTATATGAATGCTTCCTCCAGCTCCATTTATGAGCAGATCCCAGAAAGACCAAGCAGCTCTAGAACATGTCTGCCCCCACCGAATCCCAAACGCTGAGCTTAGGATGGTGTAGACCTGAATTCTCCAAGAGCTTCTTTTGTGTAACACTccgtataataaaaaaaaaaaaaaaaaatgcataatggtAAATATTAGCATGGCATATATCATGTGTACCAAAACATTACATTGCTTATAAcctgtacatacatttataagGCTTCCTAATAGTGACCTCCCCATGGAGATGTTTTTGATCTATTTAAATTGTATCGGAAATACAGTTTTTCCAGCCACTCGTTTAAAGATGTACCTGCTCAGCAAATAATTTcataacttttaataaaaaaaataaaaatactatttggGTTTACAACCACTGATTTATTAAGTGAACTGCTGCCCTTCCTTGTAAAAGTTTGTTGCTCTTAGCTGATATTATCACCATAAAAGTACAAGAATACATTAAATCACTGCATGAGAAGAACATCACAGAACAGACAGACGAAAGAGCATTTCAGTGAGTGACCAGACACACAATAAGAGCATTTCTGTAAAACCCTTTTTATTTCCACAAACAAGCCCCCCCCATTGATCATGAAGAGCTGTACTTTTCTTTAGCATTTgagaataattacaaaaaaaaaaaaaaaaaaaaaaaaaaatttaagcgACCCTAGAATGgccattttaaatatcaaaagcAGTTGGTAATT
>XM_043217990.1
ACCTTTCAAAAGCAGATCGTCAGATTGTTCATTTGAGCTTTAGTACATcagttaaatatttcacaagaaGTTTCAAAATGAAATCTGCACACTATCAGCTCTATGTGACCTTTTTCCGCTCTCTATTTCTCGCCCTCGCACATGCATTTAAACAGGATGAGGCAGAAACACTCAAGAACCGATAGGAAGAGGTAGCGTTTTACATCCTGCGCTTGAGAATGGACTTTGACTACCAAAAGATTAAAGATGCTGAATCTCAGCAGAGAGAGGAGCGACTGAGCGATCTTTCTGCCCACTACCCAAGACCAAAGCCACGTCCATTTCTGGATCCAGAGAACAATCTCACGACCAAGAAACCGCCAGTAAAACCCCGGCGGAGCATAAAGATTCGTTCCACAGCACAACAAAAGACAGAGCAATTAGACCAGGGCCAGCAGAAGGAAAATGAGACCACAGTGAAGCGGATAGATCCTGCTCTGGTTTTGGGTCCCTTGAGGCCCCTGGAGTGTCTGTCTCCGTCTCTGCGCGCTCACACTCTGCTGTGGTTTGAGAGAACGCAGCTGCCTCGACTGCACAGGCCCGGACAGCCTCTTCCTCGCTGGCTCCATGGTTTCGCTACACGCAGGGAAGCAGAACAGCTGCTGCAGGATAAGCCGCAAGGCTGTTTCCTGTTGAGGCTCAGCGAGTCAAAGATTGGCTTTGTGCTGTCTTACAGAGGAGAAGACCGATGTCGTCATTTCATAATTGAAGAGGAGGAGTATGGATCATCTGGTAGTGTATATCTCATTGCTGGAGAACACAGCCATCATAGAAGCCTGGATGAGCTAATCAGCTACTACACCCATAATCCTGTGGGGCCTTTTAATGAGATGTTGACTGTACCTTGTATGCAGCCTGATGGGAGTTTTGAGGAAATTAATAGGTGGAGGGTGaaagatgaggaagaggagaaaaaTGGAAAAGCAACAGATCGAGAGAAGCAGACAAACCTGGCCGAGGCCATCGGCCCAGCTGTTCTGAACTCCTTACACACAAACCCCTCCAGTGAGATCACTTCTGCTACAGAAGAGCCTGTGCAGTATGCAGTCGTGAGAAAACCACTGAAAAAGACCCTCTCGCTGCCAGAATGCAAGTGTGGAACTGAAACAGAGCCTCCTGGCCTTGAAAATGGCAGTTCTGACGTTGCTGAAAGCCCCTCAAATCTTAATCTAAAAGGAGATCAAGTTTCTCTTGTGGATGTCCAGTATGCTCGAGTTAACAAACCCCCCAGACTATTATCAGAAAACACCCCCAACCTCACTGCCCACCCTGACCTTCAGGGAGCAACAGCAGCCTTTACCCCTCCATCCATCCCAAACTTCGACACGACAGCAGCAGACCCGAAATACTGGAAACTGGAGCCAATGCACACTTACGAAGAGACCCCCCACACACGCAGTCGTCCAGAAGAAATTGACTGCTATGCTGTCGGGTGGAGGAGGCAGGCGGCGGGGGATGAAGTGAACCTTCCAAAGGATCACCTGTATTCAGAGGTGAACATCAAAGGGGCCCAAGAAGGCGTTGCTGTACTGAGACCCGGGCCTAGTCTTCCTCTTAGACCGCCCCCGAGATCTGCTCCTTTGCGACCCGAGCTCATCGGGCAGCTCAACCTCAACACTCCGGTTTTCATCATTCAGATCAGCCGTATATGAATGCTTCCTCCAGCTCCATTTATGAGCAGATCCCAGAAAGACCAAGCAGCTCTAGAACATGTCTGCCCCCACCGAATCCCAAACGCTGAGCTTAGGATGGTGTAGACCTGAATTCTCCAAGAGCTTCTTTTGTGTAACACTccgtataataaaaaaaaaaaaaaaaaatgcataatggtAAATATTAGCATGGCATATATCATGTGTACCAAAACATTACATTGCTTATAAcctgtacatacatttataagGCTTCCTAATAGTGACCTCCCCATGGAGATGTTTTTGATCTATTTAAATTGTATCGGAAATACAGTTTTTCCAGCCACTCGTTTAAAGATGTACCTGCTCAGCAAATAATTTcataacttttaataaaaaaaataaaaatactatttggGTTTACAACCACTGATTTATTAAGTGAACTGCTGCCCTTCCTTGTAAAAGTTTGTTGCTCTTAGCTGATATTATCACCATAAAAGTACAAGAATACATTAAATCACTGCATGAGAAGAACATCACAGAACAGACAGACGAAAGAGCATTTCAGTGAGTGACCAGACACACAATAAGAGCATTTCTGTAAAACCCTTTTTATTTCCACAAACAAGCCCCCCCCATTGATCATGAAGAGCTGTACTTTTCTTTAGCATTTgagaataattacaaaaaaaaaaaaaaaaaaaaaaaaaaatttaagcgACCCTAGAATGgccattttaaatatcaaaagcAGTTGGTAATT

Function

NR:

description
translocon-associated protein subunit beta-like

GO: NA

KEGG:

id description
K08273 SH2D2A, VRAP; SH2 domain-containing protein 2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217989.1 False 2437 mRNA 0.45 9 16959151 16966109
XM_043217990.1 True 2439 mRNA 0.45 9 16959151 16966115

Neighbor

gene id symbol gene type direction distance location
grb10a grb10a,LOC107667783,LOC107739542,LOC107565574,LOC108440880,LOC107656633,LOC108273075,LOC105905327 coding downstream 14628 16901770 ~ 16944523 (-)
nudcd1 nudcd1,LOC107697115,LOC107563704,LOC107739547,LOC107748703 coding downstream 127404 16814826 ~ 16831747 (-)
LOC122323461 LOC107592103,LOC107697214,LOC107656599,LOC107748761,LOC107563715,LOC107739630,LOC100537369 coding downstream 162631 16793249 ~ 16796520 (-)
eif3eb eif3eb,LOC107748702,LOC107592037,LOC107656637,LOC101483159,LOC108249253 coding downstream 175926 16774625 ~ 16783225 (-)
pleca LOC107748698,LOC107697034 coding downstream 187021 16686125 ~ 16772130 (-)
msmp2 si:ch1073-70f20.1,LOC107748766,LOC107565577,LOC107693399,LOC107656628,LOC107599557 coding upstream 75860 17041975 ~ 17042989 (-)
si:ch73-347e22.8 NA coding upstream 82424 17048539 ~ 17051619 (-)
si:ch73-347e22.4 LOC107693273,LOC107748715,LOC107565585,LOC107739595 coding upstream 106216 17072331 ~ 17083543 (-)
apoea apoe,LOC107565590,LOC107748767,LOC107656622,LOC107739531,LOC107599552 coding upstream 117795 17083910 ~ 17085916 (-)
apoa4a apoa4a,LOC107693394,LOC107599550,LOC107748768,LOC107739627 coding upstream 121308 17087423 ~ 17088750 (-)
LOC122323645 NA non-coding downstream 76739 16867857 ~ 16882412 (-)
LOC122323643 NA non-coding downstream 91799 16854238 ~ 16867352 (-)
G133812 NA non-coding downstream 259244 16699689 ~ 16699907 (-)
G133783 NA non-coding downstream 356615 16571601 ~ 16602536 (-)
G133775 sall3,sall3b,LOC107696994,LOC107592031,LOC107739555,LOC107656642,LOC107563697 non-coding downstream 397175 16560106 ~ 16561976 (-)
G133856 si:dkey-240h12.4,LOC107599596,LOC108440884,LOC107565569,LOC107748765,LOC107739598,LOC107656625,LOC107667793 non-coding upstream 7391 16973506 ~ 16978942 (-)
G133865 NA non-coding upstream 7916 16974031 ~ 17041793 (-)
G133852 NA non-coding upstream 51422 17017537 ~ 17020967 (-)
G133879 NA non-coding upstream 57131 17023246 ~ 17024514 (-)
G133886 NA non-coding upstream 89986 17056101 ~ 17056311 (-)
trnap-ugg_15 NA other downstream 58375 16900705 ~ 16900776 (-)
LOC122324115 NA other downstream 60550 16897995 ~ 16898601 (-)
LOC122324113 NA other downstream 62008 16896108 ~ 16897143 (-)
LOC122324112 NA other downstream 66570 16891692 ~ 16892581 (-)
LOC122324114 NA other downstream 68277 16889829 ~ 16890874 (-)
LOC122323474 LOC107589464,LOC107589461,LOC107656564,LOC107739585,LOC107599573,LOC107656565,LOC107739586,LOC107599590,LOC107693268,LOC107739622,LOC107589465,LOC107724065,LOC107656563 other upstream 247846 17213961 ~ 17218790 (-)
G133949 NA other upstream 317217 17283332 ~ 17284744 (-)
G133948 LOC107693373,LOC107724108,LOC107739520,LOC107599537 other upstream 364582 17330697 ~ 17334234 (-)
LOC122324164 LOC107589398,LOC107693356,LOC107724088,LOC107589397,LOC107599520,LOC107665487,LOC107724089 other upstream 647331 17613446 ~ 17616277 (-)
s100a10a s100a10a,LOC107599503,LOC107693282,LOC107589481,LOC107589504,LOC103356278 other upstream 963574 17929689 ~ 17935436 (-)

Expression


Co-expression Network