LOC122323882 (irgf1,LOC107656631,LOC107599582)


Basic Information

Item Value
gene id LOC122323882
gene name irgf1,LOC107656631,LOC107599582
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 16952109 ~ 16954762 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217991.1
GGAAGATACACAGGATTTTCCCTCTCGCTGTAACTAAAGGTCGAACagattatatttagatataaccGTGTAGATGTCCCCAACCATGAAAGGTTACTGAATTACAATTGGCCCGCTCCTCATGTATATTAATGAGTAAGTACCGGAGAACGATAGTGAAAGATGGCTACATTTGAAGATTATTGTGGAATAAAAAAGGAGGACTTGGAGGATATTAAAGATTCCATATCTACTCAGGATCTCCCATCAGCGATAAACACCATCAAGGAATACCTCAAACAGCAGGATCTTGTAGAACTAAACATCGGTGTGACGGGAGAGTCTGGCTCAGGAAAGTCTACATTTGTCAATGCGTTCAGGGGTTTAGGAGATGAAGAAGAGGGCTCTGCTGAAACCGGTGTAGTGGAGACCACTACAGAACCAAAGGTTTACCTTCacccaaaatacaaaaatgtaaaagtgtggGATCTTCCCGGCATTGGAACACCAAACTTTAAAGCCGATGAGTACCTTGAACAGGTTGACTTTAAGCGTTAtgattttttcataataattgcGTCAGATCGGTTCAGAGAATGCCACACTCAGCTGGCCGCAGAGATTATGAGGATGgggaaaaagttttattttgttcgttCCAAGATTGACTTTTGCATTACTgctgagaagagaaagaagagctTTGACCTGAAAAAGACTCTGAATGCCATCCGAGAGGACTGTGAAAAGGGTCTGAGAAAGATCGGTATAGAGGATCCTGTCGTGTTCCTGATTTCTGGCTGGGAGCTTGGAAAGTATGATTTAAATATTCTACAGGAGAGGATGGAGAAGGAGCTTCCACAGCATAAGAGACGGGTGCTGATGTTGGCTTTGCCAAATATTACGCTGGAGATTaatgagaaaaagaagaaagctcTAGAGGAAAACATCAGTAAAGTTGCCTTGCTGTCTGCTTGTGTGGCAGCTATTCCTCTCCCCGGTCTTTCGATCGCTGCAGATATAGCCATCTTAGCAGAAGAGCTGAGAAGGTACTACCGTGCATTTGGTCTGGATGATCCTTCACTGCAGAAGCTCTGTGAAAGATCTGGGAAGACAGTAGAGGAACTGAAGAGTCTGATGAAGTCTCCTTTTCATCAAGGGATAAATCCAAGTTCAATATTAACCTTGCTGGGTGCTGCATCCCTTCTTATATCAGAAGATGGCATTGAATTACTTGTGAGCTTCATACCCATTGTTGGCACTTTGGTGGCAGGAGGACTGTCTTATCTGACTGTCTCGAGAATGCTAAAGAAAGCTCTGAATGACATAGCTGAGGATGCTAGGAATGTCCTGATTGCTTTGTTGGAAACTGAAGTGTAACtgtaaagaaaattataatattcAACCTCATTACAACTATCTGTTCTTGGGGTctttgaagaaaaatatataaattgtttatcACATTTAATGGGAAAgtgtcatttataatttatgggttacactttttttaaggtgttcttgtgacaatttaattatacatttaaataccgattaatattaattaactaactTGATTAACTTTACAATATAGTTAGGTTTGAATTaaggttacttgcatgtaatttgttgttattataataataagtgcatgtaatgtgtaacaaagacactctaaaataaagtgttataaacatttta

Function

symbol description
irgf1 Predicted to enable GTP binding activity and GTPase activity. Predicted to be located in membrane. Orthologous to human IRGC (immunity related GTPase cinema).

NR:

description
PREDICTED: interferon-inducible GTPase 5-like

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217991.1 True 1680 mRNA 0.39 3 16952109 16954762

Neighbor

gene id symbol gene type direction distance location
gdf6b gdf6b,LOC107697222,LOC107592104,LOC107563717,LOC107739601 coding upstream 80632 16868693 ~ 16871477 (+)
pkhd1l1.1 pkhd1l1,LOC107748704,LOC107592039,LOC107739541,LOC107563710,LOC107656576 coding upstream 83648 16832659 ~ 16868461 (+)
trhrb trhrb,LOC107656598,LOC107592073,LOC107748762,LOC107563716,LOC107739629 coding upstream 142886 16803951 ~ 16809223 (+)
nfatc1 nfatc1,LOC107592032,LOC107739553,LOC107656600,LOC107697147,LOC107563708 coding upstream 304169 16609949 ~ 16647940 (+)
atp9b atp9b,LOC107656641,LOC107563702,LOC107697002 coding upstream 349563 16562326 ~ 16602546 (+)
ssr2 ssr2,LOC107739538,LOC107748705 coding downstream 2129 16956891 ~ 16959237 (+)
si:dkey-240h12.4 si:dkey-240h12.4,LOC107667793,LOC107748765,LOC107565569,LOC107656625,LOC107599596,LOC108440884,LOC108273078 coding downstream 13613 16968375 ~ 16982580 (+)
arhgef1a LOC107748710,LOC107565575,LOC107656624 coding downstream 28421 16983183 ~ 17020979 (+)
tpm3 tpm3,tpm1,LOC107565576,LOC107748711,LOC107599555,LOC100305075,LOC108440886,LOC107656626,LOC105012731,LOC106570192,LOC105896158,LOC107693397 coding downstream 68477 17023239 ~ 17041258 (+)
ecm1a NA coding downstream 100905 17055667 ~ 17057028 (+)
G133667 NA non-coding upstream 51785 16883568 ~ 16900324 (+)
G133639 NA non-coding upstream 187212 16764632 ~ 16764897 (+)
G133632 pleca non-coding upstream 244413 16707370 ~ 16707696 (+)
G133631 NA non-coding upstream 246350 16705553 ~ 16705759 (+)
G133630 NA non-coding upstream 247069 16704531 ~ 16705040 (+)
G133687 NA non-coding downstream 87214 17041976 ~ 17042543 (+)
G133688 LOC107739535 non-coding downstream 93032 17047794 ~ 17050701 (+)
G133700 NA non-coding downstream 138860 17093622 ~ 17094589 (+)
G133701 NA non-coding downstream 141799 17096561 ~ 17098720 (+)
G133702 NA non-coding downstream 144301 17099063 ~ 17099729 (+)
trnap-agg_24 NA other upstream 50549 16901489 ~ 16901560 (+)
trnap-agg_23 NA other upstream 51647 16900391 ~ 16900462 (+)
LOC122324116 NA other upstream 52040 16895872 ~ 16900069 (+)
LOC122323322 NA other upstream 66138 16884079 ~ 16885971 (+)
G133626 LOC107697034,LOC107739549,LOC107748698 other upstream 259164 16686125 ~ 16692945 (+)
pip5k1aa LOC107748713,LOC107565582,LOC107599553,LOC107739532,LOC107656623,LOC107693396 other downstream 103694 17058456 ~ 17068269 (+)
si:dkey-211g8.6 si:dkey-211g8.6,LOC107724070,LOC107739624,LOC107589367,LOC107599593,LOC107656590 other downstream 221235 17175997 ~ 17178733 (+)
mrps21 mrps21,LOC107739612,LOC107656470,LOC107724074,LOC107599587,LOC107589503 other downstream 842316 17797078 ~ 17798816 (+)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC107582081,LOC108429942,LOC107699547 other downstream 923823 17878585 ~ 17881270 (+)
dpm3 dpm3,LOC107693280,LOC107678800,LOC107750811 other downstream 1004881 17959643 ~ 17970933 (+)

Expression


Co-expression Network